Literature DB >> 25878880

Crystal structure of 4-[1-(2-hy-droxy-prop-yl)-4,5-diphenyl-1H-imidazol-2-yl]benzoic acid.

Jerry P Jasinski1, Shaaban K Mohamed2, Mehmet Akkurt3, Antar A Abdelhamid4, Mustafa R Albayati5.   

Abstract

In the title compound, C25H22N2O3, the central imidazole ring makes dihedral angles of 48.43 (10), 20.23 (10) and 75.38 (11)° with the benzene ring and the two phenyl rings, respectively. The phenyl ring adjacent to the N-bonded 2-hy-droxy-propyl group shows the greatest twist, presumably to minimize steric inter-actions. In the crystal, mol-ecules are linked by O-H⋯N, O-H⋯O and C-H⋯O hydrogen bonds, forming a three-dimensional network. In addition, C-H⋯π inter-actions are also observed.

Entities:  

Keywords:  4-[1-(2-hy­droxy­prop­yl)-4,5-diphenyl-1H-imidazol-2-yl]benzoic acid; amino alcohol; crystal structure; imidazole ring

Year:  2015        PMID: 25878880      PMCID: PMC4384621          DOI: 10.1107/S2056989014027078

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For similar structures and background to the biological properties of imidazole derivatives, see: Akkurt et al. (2013 ▸); Mohamed et al. (2013a ▸,b ▸). For the synthesis of the title compound, see: Mohamed et al. (2012 ▸).

Experimental

Crystal data

C25H22N2O3 M = 398.45 Triclinic, a = 6.8710 (4) Å b = 10.7188 (6) Å c = 14.9178 (7) Å α = 103.569 (4)° β = 93.094 (4)° γ = 105.878 (5)° V = 1019.03 (10) Å3 Z = 2 Cu Kα radiation μ = 0.69 mm−1 T = 293 K 0.36 × 0.32 × 0.24 mm

Data collection

Agilent Xcalibur (Eos, Gemini) diffractometer Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2014 ▸) T min = 0.928, T max = 1.000 6591 measured reflections 3859 independent reflections 3209 reflections with I > 2σ(I) R int = 0.022

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.136 S = 1.02 3859 reflections 274 parameters H-atom parameters constrained Δρmax = 0.25 e Å−3 Δρmin = −0.25 e Å−3

Data collection: CrysAlis PRO (Agilent, 2014 ▸); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS2013 (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL2013 (Sheldrick, 2008 ▸); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▸); software used to prepare material for publication: PLATON (Spek, 2009 ▸). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S2056989014027078/hb7338sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989014027078/hb7338Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989014027078/hb7338Isup3.cml Click here for additional data file. . DOI: 10.1107/S2056989014027078/hb7338fig1.tif Perspective view of the title mol­ecule with 50% probability ellipsoids. Click here for additional data file. . DOI: 10.1107/S2056989014027078/hb7338fig2.tif View of a part of the hydrogen bonding in the title compound CCDC reference: 1038591 Additional supporting information: crystallographic information; 3D view; checkCIF report
C25H22N2O3Z = 2
Mr = 398.45F(000) = 420
Triclinic, P1Dx = 1.299 Mg m3
Hall symbol: -P 1Cu Kα radiation, λ = 1.54184 Å
a = 6.8710 (4) ÅCell parameters from 2716 reflections
b = 10.7188 (6) Åθ = 4.7–70.9°
c = 14.9178 (7) ŵ = 0.69 mm1
α = 103.569 (4)°T = 293 K
β = 93.094 (4)°Irregular, colourless
γ = 105.878 (5)°0.36 × 0.32 × 0.24 mm
V = 1019.03 (10) Å3
Agilent Xcalibur (Eos, Gemini) diffractometer3859 independent reflections
Radiation source: Enhance (Cu) X-ray Source3209 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.022
Detector resolution: 16.0416 pixels mm-1θmax = 71.3°, θmin = 3.1°
ω scansh = −8→8
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2014)k = −13→11
Tmin = 0.928, Tmax = 1.000l = −15→18
6591 measured reflections
Refinement on F20 restraints
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.048H-atom parameters constrained
wR(F2) = 0.136w = 1/[σ2(Fo2) + (0.0703P)2 + 0.2833P] where P = (Fo2 + 2Fc2)/3
S = 1.02(Δ/σ)max < 0.001
3859 reflectionsΔρmax = 0.25 e Å3
274 parametersΔρmin = −0.25 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement on F2 for ALL reflections except those flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > σ(F2) is used only for calculating -R-factor-obs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.8499 (3)1.73494 (13)0.98882 (10)0.0517 (5)
O20.8373 (2)1.64288 (12)1.10828 (8)0.0388 (4)
O30.02746 (18)1.11133 (11)0.77597 (8)0.0320 (3)
N10.6209 (2)1.07389 (14)0.70106 (10)0.0308 (4)
N20.3691 (2)0.99670 (14)0.77918 (10)0.0303 (4)
C10.5243 (2)1.10427 (16)0.77304 (11)0.0296 (5)
C20.3686 (3)0.89049 (17)0.70448 (12)0.0307 (5)
C30.5245 (3)0.93989 (17)0.65689 (12)0.0304 (5)
C40.5945 (3)0.87422 (17)0.57186 (12)0.0323 (5)
C50.5483 (3)0.73492 (19)0.53904 (14)0.0420 (6)
C60.6122 (3)0.6785 (2)0.45708 (15)0.0480 (6)
C70.7243 (3)0.7582 (2)0.40643 (13)0.0441 (6)
C80.7719 (3)0.8962 (2)0.43826 (13)0.0421 (6)
C90.7082 (3)0.95396 (19)0.52012 (13)0.0376 (6)
C100.5889 (2)1.23891 (17)0.83951 (12)0.0306 (5)
C110.6297 (3)1.35063 (18)0.80399 (12)0.0355 (5)
C120.7025 (3)1.47865 (18)0.86269 (12)0.0357 (5)
C130.7361 (2)1.49682 (16)0.95828 (12)0.0303 (5)
C140.6976 (3)1.38537 (18)0.99390 (12)0.0338 (5)
C150.6249 (3)1.25733 (17)0.93528 (12)0.0338 (5)
C160.8137 (3)1.63675 (17)1.01870 (12)0.0337 (5)
C170.2157 (3)0.99226 (18)0.84355 (12)0.0335 (5)
C180.0062 (3)0.98690 (17)0.80001 (13)0.0332 (5)
C19−0.1480 (3)0.9614 (2)0.86693 (15)0.0434 (6)
C200.2276 (3)0.75300 (17)0.69024 (12)0.0333 (5)
C210.0656 (3)0.70164 (19)0.61958 (14)0.0434 (6)
C22−0.0584 (3)0.5708 (2)0.60422 (17)0.0544 (7)
C23−0.0218 (4)0.4910 (2)0.65886 (17)0.0563 (7)
C240.1364 (4)0.5410 (2)0.72990 (16)0.0581 (8)
C250.2614 (4)0.6721 (2)0.74577 (14)0.0465 (6)
H20.883001.721601.138200.0580*
H3−0.080501.108800.748300.0480*
H50.473900.679700.572600.0500*
H60.579200.585500.435800.0580*
H70.767400.719600.351500.0530*
H80.847300.950700.404500.0500*
H90.741601.047000.540900.0450*
H110.607901.339400.740100.0430*
H120.729101.552900.838100.0430*
H140.720801.396701.057700.0410*
H150.600001.183200.959800.0410*
H17A0.263301.071100.895800.0400*
H17B0.201800.913900.867400.0400*
H18−0.035500.913200.743200.0400*
H19A−0.109201.033900.922500.0650*
H19B−0.152700.878600.882300.0650*
H19C−0.280100.955700.838600.0650*
H210.040000.755200.582300.0520*
H22−0.166900.536900.556700.0650*
H23−0.104300.402900.647700.0680*
H240.159900.487200.767400.0700*
H250.368500.705800.794000.0560*
U11U22U33U12U13U23
O10.0798 (11)0.0273 (7)0.0409 (8)0.0080 (7)−0.0013 (7)0.0064 (6)
O20.0508 (8)0.0250 (6)0.0327 (7)0.0062 (6)−0.0012 (6)−0.0002 (5)
O30.0303 (6)0.0279 (6)0.0335 (6)0.0054 (5)−0.0004 (5)0.0044 (5)
N10.0295 (7)0.0261 (7)0.0316 (7)0.0062 (6)−0.0012 (6)0.0011 (6)
N20.0271 (7)0.0277 (7)0.0318 (7)0.0083 (6)−0.0001 (6)0.0004 (6)
C10.0285 (8)0.0264 (8)0.0301 (8)0.0086 (7)−0.0027 (6)0.0010 (7)
C20.0289 (8)0.0272 (8)0.0316 (8)0.0089 (7)−0.0031 (7)0.0000 (7)
C30.0295 (8)0.0278 (8)0.0300 (8)0.0087 (7)−0.0036 (7)0.0013 (7)
C40.0300 (8)0.0329 (9)0.0308 (8)0.0104 (7)−0.0017 (7)0.0019 (7)
C50.0448 (11)0.0330 (10)0.0435 (10)0.0099 (8)0.0077 (8)0.0023 (8)
C60.0527 (12)0.0353 (10)0.0472 (11)0.0131 (9)0.0046 (9)−0.0060 (9)
C70.0427 (11)0.0521 (12)0.0329 (9)0.0197 (9)0.0014 (8)−0.0039 (8)
C80.0394 (10)0.0502 (12)0.0367 (10)0.0144 (9)0.0055 (8)0.0098 (8)
C90.0375 (10)0.0352 (10)0.0375 (10)0.0113 (8)0.0022 (8)0.0042 (8)
C100.0252 (8)0.0271 (8)0.0337 (9)0.0069 (6)−0.0005 (6)−0.0012 (7)
C110.0378 (9)0.0335 (9)0.0293 (9)0.0071 (7)0.0005 (7)0.0020 (7)
C120.0403 (10)0.0277 (9)0.0361 (9)0.0063 (7)0.0019 (7)0.0078 (7)
C130.0275 (8)0.0268 (8)0.0327 (9)0.0078 (7)0.0008 (7)0.0012 (7)
C140.0370 (9)0.0318 (9)0.0284 (8)0.0092 (7)−0.0004 (7)0.0018 (7)
C150.0371 (9)0.0257 (8)0.0353 (9)0.0074 (7)−0.0001 (7)0.0047 (7)
C160.0352 (9)0.0282 (9)0.0343 (9)0.0086 (7)0.0011 (7)0.0031 (7)
C170.0334 (9)0.0302 (9)0.0341 (9)0.0094 (7)0.0044 (7)0.0028 (7)
C180.0313 (9)0.0247 (8)0.0401 (9)0.0073 (7)0.0018 (7)0.0034 (7)
C190.0382 (10)0.0434 (11)0.0510 (12)0.0111 (8)0.0069 (9)0.0174 (9)
C200.0344 (9)0.0275 (8)0.0336 (9)0.0078 (7)0.0063 (7)0.0009 (7)
C210.0417 (11)0.0324 (10)0.0481 (11)0.0083 (8)−0.0020 (9)−0.0002 (8)
C220.0411 (11)0.0385 (11)0.0647 (14)−0.0005 (9)0.0001 (10)−0.0065 (10)
C230.0623 (14)0.0296 (10)0.0615 (14)−0.0034 (9)0.0226 (11)−0.0010 (10)
C240.0905 (18)0.0328 (11)0.0473 (12)0.0096 (11)0.0154 (12)0.0118 (9)
C250.0608 (13)0.0348 (10)0.0378 (10)0.0094 (9)0.0005 (9)0.0047 (8)
O1—C161.207 (2)C18—C191.509 (3)
O2—C161.321 (2)C20—C251.385 (3)
O3—C181.433 (2)C20—C211.385 (3)
N1—C11.316 (2)C21—C221.386 (3)
N1—C31.387 (2)C22—C231.372 (3)
N2—C11.365 (2)C23—C241.372 (4)
N2—C21.393 (2)C24—C251.389 (3)
N2—C171.462 (2)C5—H50.9300
O2—H20.8200C6—H60.9300
O3—H30.8200C7—H70.9300
C1—C101.481 (2)C8—H80.9300
C2—C201.485 (3)C9—H90.9300
C2—C31.371 (3)C11—H110.9300
C3—C41.472 (3)C12—H120.9300
C4—C91.395 (3)C14—H140.9300
C4—C51.397 (3)C15—H150.9300
C5—C61.382 (3)C17—H17A0.9700
C6—C71.378 (3)C17—H17B0.9700
C7—C81.382 (3)C18—H180.9800
C8—C91.385 (3)C19—H19A0.9600
C10—C151.394 (2)C19—H19B0.9600
C10—C111.387 (3)C19—H19C0.9600
C11—C121.383 (3)C21—H210.9300
C12—C131.391 (2)C22—H220.9300
C13—C141.386 (3)C23—H230.9300
C13—C161.491 (2)C24—H240.9300
C14—C151.383 (3)C25—H250.9300
C17—C181.528 (3)
C1—N1—C3106.24 (15)C22—C23—C24120.1 (2)
C1—N2—C2106.50 (14)C23—C24—C25120.0 (2)
C1—N2—C17128.48 (15)C20—C25—C24120.4 (2)
C2—N2—C17124.71 (15)C4—C5—H5120.00
C16—O2—H2109.00C6—C5—H5120.00
C18—O3—H3109.00C5—C6—H6120.00
N1—C1—N2111.74 (15)C7—C6—H6120.00
N1—C1—C10122.02 (15)C6—C7—H7120.00
N2—C1—C10126.19 (14)C8—C7—H7120.00
N2—C2—C3106.17 (16)C7—C8—H8120.00
C3—C2—C20131.12 (17)C9—C8—H8120.00
N2—C2—C20122.60 (16)C4—C9—H9120.00
N1—C3—C4120.13 (17)C8—C9—H9120.00
N1—C3—C2109.35 (16)C10—C11—H11120.00
C2—C3—C4130.52 (17)C12—C11—H11120.00
C3—C4—C9118.87 (16)C11—C12—H12120.00
C3—C4—C5123.02 (17)C13—C12—H12120.00
C5—C4—C9118.10 (17)C13—C14—H14120.00
C4—C5—C6120.58 (19)C15—C14—H14120.00
C5—C6—C7120.9 (2)C10—C15—H15120.00
C6—C7—C8119.21 (19)C14—C15—H15120.00
C7—C8—C9120.50 (19)N2—C17—H17A109.00
C4—C9—C8120.76 (18)N2—C17—H17B109.00
C11—C10—C15119.05 (16)C18—C17—H17A109.00
C1—C10—C11118.17 (15)C18—C17—H17B109.00
C1—C10—C15122.60 (16)H17A—C17—H17B108.00
C10—C11—C12120.58 (16)O3—C18—H18109.00
C11—C12—C13120.27 (17)C17—C18—H18109.00
C12—C13—C16118.27 (16)C19—C18—H18109.00
C12—C13—C14119.29 (16)C18—C19—H19A109.00
C14—C13—C16122.44 (16)C18—C19—H19B109.00
C13—C14—C15120.49 (16)C18—C19—H19C109.00
C10—C15—C14120.32 (17)H19A—C19—H19B109.00
O2—C16—C13113.42 (15)H19A—C19—H19C109.00
O1—C16—C13123.33 (16)H19B—C19—H19C110.00
O1—C16—O2123.25 (17)C20—C21—H21120.00
N2—C17—C18113.88 (14)C22—C21—H21120.00
O3—C18—C17107.26 (15)C21—C22—H22120.00
O3—C18—C19112.97 (16)C23—C22—H22120.00
C17—C18—C19109.78 (16)C22—C23—H23120.00
C2—C20—C21120.99 (17)C24—C23—H23120.00
C21—C20—C25118.92 (18)C23—C24—H24120.00
C2—C20—C25120.05 (18)C25—C24—H24120.00
C20—C21—C22120.29 (19)C20—C25—H25120.00
C21—C22—C23120.3 (2)C24—C25—H25120.00
C3—N1—C1—N20.37 (19)C5—C4—C9—C80.4 (3)
C3—N1—C1—C10177.80 (15)C3—C4—C5—C6177.8 (2)
C1—N1—C3—C4179.15 (17)C9—C4—C5—C6−0.7 (3)
C1—N1—C3—C2−0.4 (2)C4—C5—C6—C70.6 (3)
C17—N2—C1—N1−173.96 (16)C5—C6—C7—C8−0.3 (3)
C2—N2—C1—N1−0.23 (19)C6—C7—C8—C90.1 (3)
C17—N2—C2—C20−9.4 (3)C7—C8—C9—C4−0.2 (3)
C2—N2—C1—C10−177.53 (16)C1—C10—C15—C14175.83 (17)
C17—N2—C1—C108.7 (3)C11—C10—C15—C140.9 (3)
C1—N2—C2—C20176.53 (17)C15—C10—C11—C12−0.9 (3)
C1—N2—C2—C30.0 (2)C1—C10—C11—C12−176.03 (17)
C17—N2—C2—C3174.02 (17)C10—C11—C12—C130.1 (3)
C2—N2—C17—C18−69.5 (2)C11—C12—C13—C16−179.71 (18)
C1—N2—C17—C18103.2 (2)C11—C12—C13—C140.6 (3)
N2—C1—C10—C1549.3 (2)C12—C13—C16—O1−0.4 (3)
N1—C1—C10—C1147.3 (2)C12—C13—C16—O2179.00 (17)
N1—C1—C10—C15−127.74 (19)C14—C13—C16—O1179.3 (2)
N2—C1—C10—C11−135.71 (18)C14—C13—C16—O2−1.3 (3)
N2—C2—C3—N10.2 (2)C12—C13—C14—C15−0.5 (3)
N2—C2—C20—C21108.0 (2)C16—C13—C14—C15179.75 (18)
C20—C2—C3—C44.7 (4)C13—C14—C15—C10−0.2 (3)
C3—C2—C20—C25101.1 (3)N2—C17—C18—O3−65.48 (19)
N2—C2—C3—C4−179.22 (19)N2—C17—C18—C19171.44 (16)
C20—C2—C3—N1−175.90 (19)C2—C20—C21—C22176.72 (19)
N2—C2—C20—C25−74.5 (3)C25—C20—C21—C22−0.9 (3)
C3—C2—C20—C21−76.4 (3)C2—C20—C25—C24−176.7 (2)
N1—C3—C4—C5160.89 (19)C21—C20—C25—C240.9 (3)
C2—C3—C4—C9158.7 (2)C20—C21—C22—C230.0 (3)
N1—C3—C4—C9−20.7 (3)C21—C22—C23—C240.9 (4)
C2—C3—C4—C5−19.7 (3)C22—C23—C24—C25−0.9 (4)
C3—C4—C9—C8−178.07 (19)C23—C24—C25—C200.0 (4)
D—H···AD—HH···AD···AD—H···A
O2—H2···O3i0.821.862.6718 (17)170
O3—H3···N1ii0.822.042.8377 (19)166
C19—H19B···O1iii0.962.463.355 (3)155
C24—H24···O2iv0.932.573.482 (3)167
C19—H19C···Cg1ii0.962.533.422 (2)154
Table 1

Hydrogen-bond geometry (, )

Cg1 is the centroid of the N1/N2/C1C3 ring.

DHA DHHA D A DHA
O2H2O3i 0.821.862.6718(17)170
O3H3N1ii 0.822.042.8377(19)166
C19H19BO1iii 0.962.463.355(3)155
C24H24O2iv 0.932.573.482(3)167
C19H19C Cg1ii 0.962.533.422(2)154

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  2-(3,4-Dimeth-oxy-phen-yl)-4,5-diphenyl-1-(prop-2-en-1-yl)-1H-imidazole.

Authors:  Shaaban K Mohamed; Mehmet Akkurt; Frank R Fronczek; Adel A E Marzouk; Antar A Abdelhamid
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-09-22

3.  2-[2-(4-Meth-oxy-phen-yl)-4,5-diphenyl-1H-imidazol-1-yl]ethanol.

Authors:  Shaaban Kamel Mohamed; Mehmet Akkurt; Adel A Marzouk; Vagif M Abbasov; Atash V Gurbanov
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-03-02

4.  4-(1-Allyl-4,5-diphenyl-1H-imidazol-2-yl)-N,N-dimethyl-aniline.

Authors:  Mehmet Akkurt; Frank R Fronczek; Shaaban K Mohamed; Avtandil H Talybov; Adel A E Marzouk; Antar A Abdelhamid
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-03-09

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20

6.  Prop-2-en-1-yl 4-(4,5-diphenyl-1H-imidazol-2-yl)benzoate.

Authors:  Shaaban K Mohamed; Mehmet Akkurt; Adel A Marzouk; Antar A Abdelhamid; Francisco Santoyo-Gonzalez
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-06-15
  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.