Literature DB >> 25878870

Crystal structure of 2-chloro-1-(3-methyl-2,6-di-phenyl-piperidin-1-yl)ethanone.

V Shreevidhyaa Suressh1, K Prathebha2, S Abdul Basheer3, S Ponnuswamy3, G Usha2.   

Abstract

In the title compound, C20H22ClNO, the piperidine ring has a twist-boat conformation. There is an intra-molecular C-H⋯π inter-action involving the two phenyl rings which are inclined to one another by 84.91 (7)°. In the crystal, mol-ecules are linked via C-H⋯O hydrogen bonds, forming helical chains along [010]. The chains are linked by C-H⋯π inter-actions, forming sheets parallel to (100).

Entities:  

Keywords:  2-chloro-ethanone; C—H⋯π interactions; crystal structure; diphenylpiperidine; hydrogen bonding; piperidine

Year:  2015        PMID: 25878870      PMCID: PMC4384538          DOI: 10.1107/S205698901500122X

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For the biological activity of piperidines and their derivatives, see: Aridoss et al. (2007 ▸); Jain et al. (2005 ▸); Mobio et al. (1989 ▸); Palani et al. (2002 ▸). For the crystal structure of a very similar compound, 2-chloro-1-(3,3-dimethyl-2,6-di­phenyl­piperidin-1-yl)ethanone, see: Prathebha et al. (2013 ▸).

Experimental

Crystal data

C20H22ClNO M = 327.84 Monoclinic, a = 8.7146 (3) Å b = 12.3963 (4) Å c = 16.6117 (6) Å β = 101.523 (2)° V = 1758.37 (10) Å3 Z = 4 Mo Kα radiation μ = 0.22 mm−1 T = 293 K 0.25 × 0.23 × 0.23 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2008 ▸) T min = 0.946, T max = 0.950 16473 measured reflections 4353 independent reflections 3075 reflections with I > 2σ(I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.050 wR(F 2) = 0.236 S = 0.92 4353 reflections 208 parameters H-atom parameters constrained Δρmax = 0.47 e Å−3 Δρmin = −0.38 e Å−3

Data collection: APEX2 (Bruker, 2008 ▸); cell refinement: SAINT (Bruker, 2008 ▸); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL97 (Sheldrick, 2015 ▸); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▸); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▸). Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S205698901500122X/su5068sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S205698901500122X/su5068Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S205698901500122X/su5068Isup3.cml Click here for additional data file. . DOI: 10.1107/S205698901500122X/su5068fig1.tif The mol­ecular structure of the title compound, with atom labelling. Displacement ellipsoids are drawn at the 30% probability level. The intra­molecular C—H⋯π inter­action is shown as a dashed line (see Table 1 for details). Click here for additional data file. a . DOI: 10.1107/S205698901500122X/su5068fig2.tif A view along the a axis of the crystal packing of the title compound. The dashed lines indicate the hydrogen bonds (see Table 1 for details). CCDC reference: 1044361 Additional supporting information: crystallographic information; 3D view; checkCIF report
C20H22ClNOF(000) = 696
Mr = 327.84Dx = 1.238 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 4353 reflections
a = 8.7146 (3) Åθ = 2.1–28.2°
b = 12.3963 (4) ŵ = 0.22 mm1
c = 16.6117 (6) ÅT = 293 K
β = 101.523 (2)°Block, colourless
V = 1758.37 (10) Å30.25 × 0.23 × 0.23 mm
Z = 4
Bruker APEXII CCD diffractometer4353 independent reflections
Radiation source: fine-focus sealed tube3075 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.026
ω and φ scanθmax = 28.2°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Bruker, 2008)h = −11→11
Tmin = 0.946, Tmax = 0.950k = −16→14
16473 measured reflectionsl = −22→16
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.050Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.236H-atom parameters constrained
S = 0.92w = 1/[σ2(Fo2) + (0.2P)2] where P = (Fo2 + 2Fc2)/3
4353 reflections(Δ/σ)max < 0.001
208 parametersΔρmax = 0.47 e Å3
0 restraintsΔρmin = −0.38 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C170.6269 (2)0.82630 (15)0.42412 (12)0.0533 (5)
H170.65070.89950.42640.064*
C10.3083 (2)0.97610 (15)0.30256 (11)0.0498 (4)
C20.2026 (2)0.88094 (17)0.31112 (13)0.0579 (5)
H2A0.14000.89720.35170.069*
H2B0.26570.81770.32930.069*
C30.4639 (5)1.0949 (3)0.11267 (17)0.1078 (11)
H3A0.45081.16800.12900.162*
H3B0.36571.05750.10620.162*
H3C0.49911.09430.06150.162*
C40.53945 (19)1.05108 (12)0.26296 (10)0.0426 (4)
H40.46601.11180.25710.051*
C50.67052 (19)1.08102 (12)0.33476 (10)0.0415 (4)
C60.6292 (2)1.13399 (16)0.40066 (12)0.0548 (5)
H60.52401.14700.40030.066*
C70.7409 (3)1.16786 (19)0.46692 (14)0.0678 (6)
H70.71021.20390.51020.081*
C80.8963 (3)1.14864 (17)0.46926 (15)0.0674 (6)
H80.97131.17070.51420.081*
C90.9404 (2)1.09646 (16)0.40468 (14)0.0615 (5)
H91.04581.08290.40610.074*
C100.8292 (2)1.06365 (14)0.33729 (12)0.0507 (4)
H100.86101.02970.29340.061*
C120.5843 (2)1.03897 (16)0.17806 (11)0.0548 (5)
H120.68431.07640.18070.066*
C130.6075 (3)0.92372 (16)0.15453 (13)0.0677 (6)
H13A0.51340.89860.11780.081*
H13B0.69290.92050.12500.081*
C140.6440 (3)0.84909 (14)0.22878 (13)0.0555 (5)
H14A0.73600.87500.26660.067*
H14B0.66610.77720.21110.067*
C150.5053 (2)0.84491 (12)0.27212 (11)0.0446 (4)
H150.42080.80590.23600.053*
C160.54725 (18)0.78122 (13)0.35133 (10)0.0439 (4)
C180.6713 (2)0.76237 (18)0.49382 (13)0.0601 (5)
H180.72530.79320.54230.072*
C190.6364 (3)0.65523 (18)0.49162 (15)0.0633 (5)
H190.66730.61300.53830.076*
C200.5549 (3)0.60920 (16)0.41981 (15)0.0660 (6)
H200.53000.53620.41840.079*
C210.5101 (2)0.67207 (14)0.34978 (13)0.0533 (5)
H210.45510.64100.30160.064*
N10.44797 (15)0.95570 (11)0.28196 (8)0.0429 (4)
O10.25929 (16)1.06617 (12)0.31359 (10)0.0666 (4)
Cl10.07878 (7)0.85512 (5)0.21470 (4)0.0825 (3)
U11U22U33U12U13U23
C170.0562 (11)0.0472 (10)0.0536 (11)−0.0082 (8)0.0041 (8)0.0001 (8)
C10.0431 (9)0.0574 (10)0.0479 (9)0.0011 (7)0.0069 (7)0.0009 (8)
C20.0448 (9)0.0684 (12)0.0604 (12)−0.0021 (8)0.0106 (8)0.0106 (9)
C30.156 (3)0.112 (2)0.0510 (14)0.046 (2)0.0100 (16)0.0171 (14)
C40.0463 (8)0.0389 (8)0.0431 (9)0.0000 (6)0.0101 (7)0.0021 (6)
C50.0471 (8)0.0327 (7)0.0455 (9)−0.0017 (6)0.0110 (7)0.0004 (6)
C60.0509 (10)0.0632 (11)0.0518 (11)0.0061 (8)0.0138 (8)−0.0084 (8)
C70.0716 (14)0.0793 (14)0.0506 (11)0.0073 (11)0.0079 (10)−0.0165 (10)
C80.0613 (12)0.0715 (13)0.0623 (13)−0.0037 (10)−0.0046 (10)−0.0086 (10)
C90.0477 (10)0.0570 (11)0.0772 (14)−0.0019 (8)0.0062 (9)−0.0096 (10)
C100.0494 (9)0.0437 (9)0.0601 (11)−0.0015 (7)0.0139 (8)−0.0070 (8)
C120.0668 (12)0.0546 (11)0.0447 (10)−0.0038 (8)0.0151 (8)0.0025 (8)
C130.0993 (16)0.0601 (12)0.0502 (11)0.0033 (11)0.0305 (11)−0.0054 (9)
C140.0698 (12)0.0449 (9)0.0578 (11)0.0054 (8)0.0269 (9)−0.0036 (8)
C150.0472 (9)0.0385 (8)0.0465 (9)−0.0035 (6)0.0057 (7)−0.0045 (6)
C160.0395 (8)0.0427 (8)0.0496 (9)−0.0013 (6)0.0089 (7)−0.0017 (7)
C180.0521 (10)0.0715 (13)0.0528 (11)−0.0055 (9)0.0014 (8)0.0043 (9)
C190.0608 (12)0.0658 (12)0.0648 (13)0.0057 (9)0.0159 (10)0.0212 (10)
C200.0820 (15)0.0449 (10)0.0749 (14)−0.0032 (9)0.0245 (12)0.0103 (9)
C210.0600 (11)0.0424 (9)0.0580 (11)−0.0060 (7)0.0134 (9)−0.0014 (8)
N10.0422 (7)0.0418 (7)0.0445 (8)−0.0020 (5)0.0081 (6)0.0003 (6)
O10.0523 (8)0.0640 (9)0.0863 (11)0.0095 (6)0.0205 (7)−0.0041 (7)
Cl10.0729 (4)0.0820 (5)0.0812 (5)−0.0188 (3)−0.0121 (3)−0.0008 (3)
C17—C161.386 (2)C8—H80.9300
C17—C181.393 (3)C9—C101.387 (3)
C17—H170.9300C9—H90.9300
C1—O11.222 (2)C10—H100.9300
C1—N11.352 (2)C12—C131.505 (3)
C1—C21.521 (3)C12—H120.9800
C2—Cl11.773 (2)C13—C141.524 (3)
C2—H2A0.9700C13—H13A0.9700
C2—H2B0.9700C13—H13B0.9700
C3—C121.518 (3)C14—C151.526 (3)
C3—H3A0.9600C14—H14A0.9700
C3—H3B0.9600C14—H14B0.9700
C3—H3C0.9600C15—N11.482 (2)
C4—N11.495 (2)C15—C161.515 (2)
C4—C51.523 (2)C15—H150.9800
C4—C121.544 (2)C16—C211.390 (2)
C4—H40.9800C18—C191.361 (3)
C5—C61.384 (2)C18—H180.9300
C5—C101.392 (2)C19—C201.384 (3)
C6—C71.381 (3)C19—H190.9300
C6—H60.9300C20—C211.390 (3)
C7—C81.368 (3)C20—H200.9300
C7—H70.9300C21—H210.9300
C8—C91.372 (3)
C16—C17—C18120.23 (17)C13—C12—C3110.9 (2)
C16—C17—H17119.9C13—C12—C4113.64 (15)
C18—C17—H17119.9C3—C12—C4110.11 (19)
O1—C1—N1124.60 (17)C13—C12—H12107.3
O1—C1—C2117.28 (17)C3—C12—H12107.3
N1—C1—C2118.11 (16)C4—C12—H12107.3
C1—C2—Cl1109.05 (13)C14—C13—C12112.53 (17)
C1—C2—H2A109.9C14—C13—H13A109.1
Cl1—C2—H2A109.9C12—C13—H13A109.1
C1—C2—H2B109.9C14—C13—H13B109.1
Cl1—C2—H2B109.9C12—C13—H13B109.1
H2A—C2—H2B108.3H13A—C13—H13B107.8
C12—C3—H3A109.5C13—C14—C15110.24 (17)
C12—C3—H3B109.5C13—C14—H14A109.6
H3A—C3—H3B109.5C15—C14—H14A109.6
C12—C3—H3C109.5C13—C14—H14B109.6
H3A—C3—H3C109.5C15—C14—H14B109.6
H3B—C3—H3C109.5H14A—C14—H14B108.1
N1—C4—C5112.06 (13)N1—C15—C16114.54 (14)
N1—C4—C12111.04 (13)N1—C15—C14109.68 (13)
C5—C4—C12116.84 (14)C16—C15—C14110.55 (15)
N1—C4—H4105.3N1—C15—H15107.2
C5—C4—H4105.3C16—C15—H15107.2
C12—C4—H4105.3C14—C15—H15107.2
C6—C5—C10117.60 (16)C17—C16—C21118.86 (17)
C6—C5—C4117.51 (15)C17—C16—C15122.65 (15)
C10—C5—C4124.82 (15)C21—C16—C15118.43 (15)
C7—C6—C5121.42 (18)C19—C18—C17120.6 (2)
C7—C6—H6119.3C19—C18—H18119.7
C5—C6—H6119.3C17—C18—H18119.7
C8—C7—C6120.4 (2)C18—C19—C20119.92 (19)
C8—C7—H7119.8C18—C19—H19120.0
C6—C7—H7119.8C20—C19—H19120.0
C7—C8—C9119.4 (2)C19—C20—C21120.01 (18)
C7—C8—H8120.3C19—C20—H20120.0
C9—C8—H8120.3C21—C20—H20120.0
C8—C9—C10120.65 (19)C20—C21—C16120.33 (19)
C8—C9—H9119.7C20—C21—H21119.8
C10—C9—H9119.7C16—C21—H21119.8
C5—C10—C9120.56 (18)C1—N1—C15122.79 (14)
C5—C10—H10119.7C1—N1—C4116.78 (14)
C9—C10—H10119.7C15—N1—C4120.28 (13)
O1—C1—C2—Cl188.83 (19)C18—C17—C16—C15−175.86 (17)
N1—C1—C2—Cl1−90.01 (18)N1—C15—C16—C17−41.6 (2)
N1—C4—C5—C6−75.98 (19)C14—C15—C16—C1782.9 (2)
C12—C4—C5—C6154.28 (16)N1—C15—C16—C21141.29 (16)
N1—C4—C5—C10107.24 (18)C14—C15—C16—C21−94.20 (19)
C12—C4—C5—C10−22.5 (2)C16—C17—C18—C19−0.4 (3)
C10—C5—C6—C7−0.4 (3)C17—C18—C19—C20−0.5 (3)
C4—C5—C6—C7−177.46 (19)C18—C19—C20—C210.7 (3)
C5—C6—C7—C8−0.7 (3)C19—C20—C21—C160.2 (3)
C6—C7—C8—C90.8 (4)C17—C16—C21—C20−1.1 (3)
C7—C8—C9—C100.3 (3)C15—C16—C21—C20176.11 (18)
C6—C5—C10—C91.5 (3)O1—C1—N1—C15177.72 (17)
C4—C5—C10—C9178.23 (16)C2—C1—N1—C15−3.5 (3)
C8—C9—C10—C5−1.4 (3)O1—C1—N1—C4−6.8 (3)
N1—C4—C12—C13−30.7 (2)C2—C1—N1—C4171.99 (14)
C5—C4—C12—C1399.5 (2)C16—C15—N1—C1−69.0 (2)
N1—C4—C12—C394.4 (2)C14—C15—N1—C1166.04 (16)
C5—C4—C12—C3−135.4 (2)C16—C15—N1—C4115.63 (16)
C3—C12—C13—C14−146.8 (2)C14—C15—N1—C4−9.3 (2)
C4—C12—C13—C14−22.1 (3)C5—C4—N1—C1101.09 (17)
C12—C13—C14—C1563.8 (2)C12—C4—N1—C1−126.23 (17)
C13—C14—C15—N1−46.3 (2)C5—C4—N1—C15−83.27 (17)
C13—C14—C15—C16−173.53 (16)C12—C4—N1—C1549.41 (19)
C18—C17—C16—C211.3 (3)
D—H···AD—HH···AD···AD—H···A
C17—H17···Cg10.932.983.879 (2)164
C21—H21···O1i0.932.573.472 (3)165
C14—H14b···Cg1ii0.982.843.751 (2)156
Table 1

Hydrogen-bond geometry (, )

Cg1 is the centroid of the C5C10 ring.

DHA DHHA D A DHA
C17H17Cg10.932.983.879(2)164
C21H21O1i 0.932.573.472(3)165
C14H14bCg1ii 0.982.843.751(2)156

Symmetry codes: (i) ; (ii) .

  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

Review 2.  Bacterial Peptide deformylase inhibitors: a new class of antibacterial agents.

Authors:  R Jain; D Chen; R J White; D V Patel; Z Yuan
Journal:  Curr Med Chem       Date:  2005       Impact factor: 4.530

3.  Synthesis, SAR, and biological evaluation of oximino-piperidino-piperidine amides. 1. Orally bioavailable CCR5 receptor antagonists with potent anti-HIV activity.

Authors:  Anandan Palani; Sherry Shapiro; Hubert Josien; Thomas Bara; John W Clader; William J Greenlee; Kathleen Cox; Julie M Strizki; Bahige M Baroudy
Journal:  J Med Chem       Date:  2002-07-04       Impact factor: 7.446

4.  Crystal structure refinement with SHELXL.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr C Struct Chem       Date:  2015-01-01       Impact factor: 1.172

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20

6.  2-Chloro-1-(3,3-dimethyl-2,6-di-phenyl-piperidin-1-yl)ethanone.

Authors:  K Prathebha; B K Revathi; G Usha; S Ponnuswamy; S Abdul Basheer
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-08-14
  6 in total

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