Literature DB >> 25878868

Crystal structure of (2S/2R,3S/3R)-3-hydroxy-2-phenyl-chroman-4-one.

Roumaissa Belguedj1, Sofiane Bouacida2, Hocine Merazig1, Aissa Chibani1, Abdelmalek Bouraiou1.   

Abstract

In the title mol-ecule, C15H12O3, the C atoms bearing the hy-droxy group and the phenyl ring are disordered over two sets of sites with refined occupancies of 0.573 (7) and 0.427 (7). There is also disorder of the phenyl ring but the hy-droxy group was refined as ordered. The dihedral angles between the benzene ring of the chromane ring system and the phenyl ring are 89.7 (2)° for the major component of disorder and 72.1 (3)° for the minor component. Both disorder components of the the di-hydro-pyran ring are in a half-chair conformation. In the crystal, mol-ecules are linked by pairs of O-H⋯O hydrogen bonds, forming inversion dimers with an R 2 (2)(10) graph-set motif. Weak C-H⋯π inter-actions link these dimers into ladders along [001].

Entities:  

Keywords:  C—H⋯π inter­actions; crystal structure; flavone derivative; hydrogen bonds

Year:  2015        PMID: 25878868      PMCID: PMC4384603          DOI: 10.1107/S2056989015001346

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For the synthesis and applications of flavone derivatives, see: Gaspar et al. (2014 ▸); Huang et al. (2007 ▸); Yu et al. (2003 ▸); Phosrithong et al. (2012 ▸); Harborne & Williams (2000 ▸); Tanaka & Sugino (2001 ▸); Saxena et al. (1985 ▸). For the synthesis of the title compound, see: Juvale et al. (2013 ▸). For a related structure, see: Piaskowska et al. (2013 ▸).

Experimental

Crystal data

C15H12O3 M = 240.25 Monoclinic, a = 5.3068 (3) Å b = 26.7110 (18) Å c = 9.4679 (6) Å β = 117.431 (3)° V = 1191.18 (13) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 295 K 0.16 × 0.11 × 0.08 mm

Data collection

Bruker APEXII diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2002 ▸) T min = 0.615, T max = 0.745 6701 measured reflections 2356 independent reflections 1517 reflections with I > 2σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.058 wR(F 2) = 0.148 S = 1.06 2356 reflections 216 parameters 30 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.14 e Å−3 Δρmin = −0.16 e Å−3

Data collection: APEX2 (Bruker, 2011 ▸); cell refinement: SAINT (Bruker, 2011 ▸); data reduction: SAINT; program(s) used to solve structure: SIR2002 (Burla et al., 2005 ▸); program(s) used to refine structure: SHELXL97 (Sheldrick, 2015 ▸); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▸); software used to prepare material for publication: WinGX (Farrugia, 2012 ▸). Crystal structure: contains datablock(s) I. DOI: 10.1107/S2056989015001346/lh5747sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015001346/lh5747Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015001346/lh5747Isup3.cml Click here for additional data file. . DOI: 10.1107/S2056989015001346/lh5747fig1.tif The mol­ecule structure of the title compound. Displacement are drawn at the 30% probability level. H atoms are represented as small spheres of arbitrary radius. The minor component of disorder is not shown. Click here for additional data file. . DOI: 10.1107/S2056989015001346/lh5747fig2.tif Part of the crystal structure of the title compound with hydrogen bonds shown as dashed lines and C—H⋯π intectations as green unbroken lines. The minor component of disorder is not shown. CCDC reference: 1044756 Additional supporting information: crystallographic information; 3D view; checkCIF report
C15H12O3F(000) = 504
Mr = 240.25Dx = 1.34 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 1712 reflections
a = 5.3068 (3) Åθ = 2.5–23.2°
b = 26.7110 (18) ŵ = 0.09 mm1
c = 9.4679 (6) ÅT = 295 K
β = 117.431 (3)°Prism, colorless
V = 1191.18 (13) Å30.16 × 0.11 × 0.08 mm
Z = 4
Bruker APEXII diffractometer2356 independent reflections
Radiation source: Enraf Nonius FR5901517 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.031
CCD rotation images, thick slices scansθmax = 26.1°, θmin = 2.9°
Absorption correction: multi-scan (SADABS; Sheldrick, 2002)h = −5→6
Tmin = 0.615, Tmax = 0.745k = −32→31
6701 measured reflectionsl = −11→11
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.058Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.148H atoms treated by a mixture of independent and constrained refinement
S = 1.06w = 1/[σ2(Fo2) + (0.0475P)2 + 0.5327P] where P = (Fo2 + 2Fc2)/3
2356 reflections(Δ/σ)max < 0.001
216 parametersΔρmax = 0.14 e Å3
30 restraintsΔρmin = −0.16 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
O10.4498 (4)0.85751 (6)0.56442 (18)0.0538 (5)
O20.8643 (5)0.98972 (7)0.6185 (2)0.0768 (6)
O30.7507 (5)0.93216 (8)0.3576 (2)0.0811 (7)
C10.5095 (5)0.88656 (9)0.6949 (3)0.0487 (6)
C20.4263 (6)0.86841 (11)0.8046 (3)0.0654 (8)
H2A0.33270.83790.78750.079*
C30.4833 (7)0.89589 (12)0.9380 (3)0.0782 (9)
H3A0.4280.88371.01160.094*
C40.6224 (8)0.94163 (13)0.9653 (3)0.0826 (10)
H4A0.66230.95981.0570.099*
C50.7001 (7)0.95974 (11)0.8560 (3)0.0694 (8)
H5A0.78880.99080.87250.083*
C60.6481 (5)0.93229 (9)0.7201 (3)0.0504 (6)
C70.7425 (6)0.95026 (10)0.6059 (3)0.0590 (7)
C80.7356 (10)0.91069 (15)0.4871 (5)0.0480 (15)0.573 (7)
H8A0.89730.8880.54120.058*0.573 (7)
C90.4642 (10)0.88120 (18)0.4324 (4)0.0440 (14)0.573 (7)
H9A0.30630.9050.3860.053*0.573 (7)
C8A0.6023 (12)0.9234 (2)0.4446 (5)0.048 (2)0.427 (7)
H8AA0.40520.93460.38360.058*0.427 (7)
C9A0.6092 (14)0.8684 (2)0.4818 (8)0.0491 (18)0.427 (7)
H9AA0.80710.8590.55060.059*0.427 (7)
C100.4143 (17)0.8417 (2)0.3093 (6)0.0438 (19)0.573 (7)
C110.1560 (16)0.8427 (3)0.1717 (8)0.066 (2)0.573 (7)
H11A0.02070.86670.15960.08*0.573 (7)
C120.0997 (14)0.8077 (3)0.0521 (6)0.082 (3)0.573 (7)
H12A−0.07310.8083−0.03990.099*0.573 (7)
C130.3018 (18)0.7718 (3)0.0702 (8)0.075 (4)0.573 (7)
H13A0.26420.7484−0.00980.09*0.573 (7)
C140.5602 (16)0.7708 (3)0.2078 (9)0.0589 (19)0.573 (7)
H14A0.69540.74680.21990.071*0.573 (7)
C150.6165 (13)0.8058 (3)0.3273 (7)0.0531 (19)0.573 (7)
H15A0.78930.80520.41940.064*0.573 (7)
C10A0.499 (2)0.8360 (4)0.3363 (9)0.054 (3)0.427 (7)
C11A0.212 (2)0.8324 (3)0.2302 (10)0.053 (2)0.427 (7)
H11B0.08050.85190.24470.063*0.427 (7)
C12A0.1204 (18)0.7995 (4)0.1023 (10)0.063 (3)0.427 (7)
H12B−0.07180.7970.03130.076*0.427 (7)
C13A0.317 (3)0.7703 (3)0.0806 (11)0.063 (5)0.427 (7)
H13B0.25550.7482−0.0050.076*0.427 (7)
C14A0.604 (2)0.7739 (5)0.1867 (13)0.081 (4)0.427 (7)
H14B0.7350.75440.17210.097*0.427 (7)
C15A0.6950 (16)0.8068 (5)0.3145 (11)0.066 (3)0.427 (7)
H15B0.88720.80930.38550.079*0.427 (7)
H3O0.843 (9)0.9610 (11)0.382 (5)0.160 (18)*
U11U22U33U12U13U23
O10.0702 (11)0.0484 (10)0.0507 (10)−0.0118 (8)0.0346 (9)−0.0009 (7)
O20.0990 (16)0.0637 (12)0.0829 (14)−0.0364 (11)0.0548 (13)−0.0229 (10)
O30.1237 (19)0.0708 (14)0.0775 (13)−0.0378 (13)0.0709 (14)−0.0188 (11)
C10.0544 (14)0.0501 (14)0.0424 (12)0.0046 (12)0.0229 (11)0.0071 (11)
C20.085 (2)0.0643 (17)0.0572 (16)0.0026 (15)0.0411 (16)0.0131 (13)
C30.110 (3)0.082 (2)0.0583 (18)0.0144 (19)0.0524 (18)0.0184 (16)
C40.124 (3)0.080 (2)0.0492 (16)0.016 (2)0.0449 (19)0.0012 (15)
C50.092 (2)0.0647 (18)0.0500 (15)−0.0016 (15)0.0312 (15)−0.0051 (13)
C60.0578 (15)0.0511 (15)0.0414 (12)0.0033 (12)0.0220 (12)0.0015 (11)
C70.0714 (17)0.0544 (16)0.0567 (16)−0.0152 (14)0.0340 (14)−0.0079 (12)
C80.046 (3)0.052 (3)0.049 (3)−0.006 (2)0.024 (2)0.003 (2)
C90.049 (3)0.045 (3)0.046 (3)−0.008 (2)0.029 (2)−0.003 (2)
C8A0.067 (5)0.040 (4)0.044 (4)0.003 (3)0.030 (4)0.005 (3)
C9A0.040 (4)0.053 (4)0.053 (4)−0.001 (3)0.021 (3)−0.001 (3)
C100.046 (5)0.046 (4)0.053 (4)−0.013 (3)0.034 (4)−0.005 (3)
C110.050 (3)0.058 (5)0.073 (5)0.002 (3)0.013 (4)−0.007 (4)
C120.067 (5)0.085 (6)0.075 (5)0.000 (4)0.016 (4)−0.021 (4)
C130.062 (6)0.088 (9)0.080 (8)−0.031 (5)0.038 (6)−0.027 (6)
C140.068 (4)0.044 (4)0.073 (4)0.017 (3)0.040 (4)0.002 (3)
C150.051 (4)0.061 (4)0.044 (3)0.001 (4)0.018 (3)0.000 (3)
C10A0.053 (7)0.051 (6)0.061 (5)−0.012 (4)0.029 (4)−0.005 (4)
C11A0.052 (6)0.045 (5)0.067 (7)0.014 (4)0.032 (6)0.002 (4)
C12A0.052 (5)0.063 (5)0.058 (5)−0.013 (4)0.011 (4)−0.014 (5)
C13A0.101 (11)0.022 (6)0.064 (9)0.011 (6)0.036 (8)−0.008 (5)
C14A0.090 (7)0.078 (8)0.084 (8)−0.001 (6)0.050 (6)−0.012 (6)
C15A0.059 (5)0.078 (6)0.076 (5)−0.002 (5)0.045 (5)−0.004 (4)
O1—C11.367 (3)C8A—H8AA0.98
O1—C9A1.422 (4)C9A—C10A1.498 (4)
O1—C91.434 (4)C9A—H9AA0.98
O2—C71.213 (3)C10—C111.39
O3—C81.389 (4)C10—C151.39
O3—C8A1.396 (4)C11—C121.39
O3—H3O0.885 (19)C11—H11A0.93
C1—C61.388 (3)C12—C131.39
C1—C21.390 (3)C12—H12A0.93
C2—C31.369 (4)C13—C141.39
C2—H2A0.93C13—H13A0.93
C3—C41.389 (4)C14—C151.39
C3—H3A0.93C14—H14A0.93
C4—C51.367 (4)C15—H15A0.93
C4—H4A0.93C10A—C11A1.39
C5—C61.394 (3)C10A—C15A1.39
C5—H5A0.93C11A—C12A1.39
C6—C71.466 (3)C11A—H11B0.93
C7—C81.532 (4)C12A—C13A1.39
C7—C8A1.534 (5)C12A—H12B0.93
C8—C91.509 (4)C13A—C14A1.39
C8—H8A0.98C13A—H13B0.93
C9—C101.502 (4)C14A—C15A1.39
C9—H9A0.98C14A—H14B0.93
C8A—C9A1.507 (5)C15A—H15B0.93
C1—O1—C9A115.6 (3)O3—C8A—H8AA109.9
C1—O1—C9117.0 (2)C9A—C8A—H8AA109.9
C9A—O1—C931.3 (2)C7—C8A—H8AA109.9
C8—O3—C8A29.9 (3)O1—C9A—C10A107.9 (5)
C8—O3—H3O113 (3)O1—C9A—C8A111.8 (4)
C8A—O3—H3O113 (3)C10A—C9A—C8A113.0 (6)
O1—C1—C6122.6 (2)O1—C9A—H9AA108
O1—C1—C2117.1 (2)C10A—C9A—H9AA108
C6—C1—C2120.3 (2)C8A—C9A—H9AA108
C3—C2—C1119.4 (3)C11—C10—C15120
C3—C2—H2A120.3C11—C10—C9117.4 (5)
C1—C2—H2A120.3C15—C10—C9122.6 (5)
C2—C3—C4121.0 (3)C12—C11—C10120
C2—C3—H3A119.5C12—C11—H11A120
C4—C3—H3A119.5C10—C11—H11A120
C5—C4—C3119.4 (3)C11—C12—C13120
C5—C4—H4A120.3C11—C12—H12A120
C3—C4—H4A120.3C13—C12—H12A120
C4—C5—C6120.8 (3)C14—C13—C12120
C4—C5—H5A119.6C14—C13—H13A120
C6—C5—H5A119.6C12—C13—H13A120
C1—C6—C5119.0 (2)C13—C14—C15120
C1—C6—C7119.7 (2)C13—C14—H14A120
C5—C6—C7121.3 (2)C15—C14—H14A120
O2—C7—C6124.0 (2)C14—C15—C10120
O2—C7—C8120.2 (2)C14—C15—H15A120
C6—C7—C8114.5 (2)C10—C15—H15A120
O2—C7—C8A119.7 (3)C11A—C10A—C15A120
C6—C7—C8A114.0 (3)C11A—C10A—C9A122.6 (8)
C8—C7—C8A27.1 (2)C15A—C10A—C9A117.3 (8)
O3—C8—C9110.3 (3)C12A—C11A—C10A120
O3—C8—C7111.8 (3)C12A—C11A—H11B120
C9—C8—C7107.9 (3)C10A—C11A—H11B120
O3—C8—H8A108.9C11A—C12A—C13A120
C9—C8—H8A108.9C11A—C12A—H12B120
C7—C8—H8A108.9C13A—C12A—H12B120
O1—C9—C10107.8 (4)C12A—C13A—C14A120
O1—C9—C8110.9 (3)C12A—C13A—H13B120
C10—C9—C8115.6 (5)C14A—C13A—H13B120
O1—C9—H9A107.4C15A—C14A—C13A120
C10—C9—H9A107.4C15A—C14A—H14B120
C8—C9—H9A107.4C13A—C14A—H14B120
O3—C8A—C9A109.9 (4)C14A—C15A—C10A120
O3—C8A—C7111.2 (3)C14A—C15A—H15B120
C9A—C8A—C7105.9 (4)C10A—C15A—H15B120
C9A—O1—C1—C618.5 (4)O2—C7—C8A—O332.0 (6)
C9—O1—C1—C6−16.6 (4)C6—C7—C8A—O3−164.2 (3)
C9A—O1—C1—C2−161.2 (4)C8—C7—C8A—O3−67.0 (5)
C9—O1—C1—C2163.7 (3)O2—C7—C8A—C9A151.4 (4)
O1—C1—C2—C3179.4 (2)C6—C7—C8A—C9A−44.8 (5)
C6—C1—C2—C3−0.3 (4)C8—C7—C8A—C9A52.5 (5)
C1—C2—C3—C40.1 (5)C1—O1—C9A—C10A−175.4 (5)
C2—C3—C4—C50.9 (5)C9—O1—C9A—C10A−75.0 (9)
C3—C4—C5—C6−1.7 (5)C1—O1—C9A—C8A−50.5 (6)
O1—C1—C6—C5179.8 (2)C9—O1—C9A—C8A49.9 (5)
C2—C1—C6—C5−0.5 (4)O3—C8A—C9A—O1−177.4 (4)
O1—C1—C6—C7−1.6 (4)C7—C8A—C9A—O162.3 (6)
C2—C1—C6—C7178.1 (2)O3—C8A—C9A—C10A−55.4 (7)
C4—C5—C6—C11.5 (4)C7—C8A—C9A—C10A−175.7 (5)
C4—C5—C6—C7−177.1 (3)O1—C9—C10—C11107.8 (5)
C1—C6—C7—O2179.8 (3)C8—C9—C10—C11−127.5 (4)
C5—C6—C7—O2−1.6 (4)O1—C9—C10—C15−73.4 (6)
C1—C6—C7—C8−13.0 (4)C8—C9—C10—C1551.3 (6)
C5—C6—C7—C8165.6 (3)C15—C10—C11—C120
C1—C6—C7—C8A16.8 (4)C9—C10—C11—C12178.8 (6)
C5—C6—C7—C8A−164.6 (3)C10—C11—C12—C130
C8A—O3—C8—C951.2 (5)C11—C12—C13—C140
C8A—O3—C8—C7−68.9 (4)C12—C13—C14—C150
O2—C7—C8—O3−28.7 (5)C13—C14—C15—C100
C6—C7—C8—O3163.6 (3)C11—C10—C15—C140
C8A—C7—C8—O368.3 (4)C9—C10—C15—C14−178.7 (6)
O2—C7—C8—C9−150.2 (3)O1—C9A—C10A—C11A50.0 (9)
C6—C7—C8—C942.1 (4)C8A—C9A—C10A—C11A−74.2 (8)
C8A—C7—C8—C9−53.2 (5)O1—C9A—C10A—C15A−126.3 (6)
C1—O1—C9—C10175.6 (4)C8A—C9A—C10A—C15A109.5 (6)
C9A—O1—C9—C1080.1 (8)C15A—C10A—C11A—C12A0
C1—O1—C9—C848.1 (5)C9A—C10A—C11A—C12A−176.2 (9)
C9A—O1—C9—C8−47.4 (5)C10A—C11A—C12A—C13A0
O3—C8—C9—O1178.2 (3)C11A—C12A—C13A—C14A0
C7—C8—C9—O1−59.4 (5)C12A—C13A—C14A—C15A0
O3—C8—C9—C1055.1 (5)C13A—C14A—C15A—C10A0
C7—C8—C9—C10177.6 (4)C11A—C10A—C15A—C14A0
C8—O3—C8A—C9A−48.9 (5)C9A—C10A—C15A—C14A176.4 (9)
C8—O3—C8A—C768.1 (5)
D—H···AD—HH···AD···AD—H···A
O3—H3O···O2i0.89 (4)2.04 (4)2.856 (3)153 (4)
C3—H3A···Cg1ii0.932.743.596 (5)153
C3—H3A···Cg2ii0.932.923.756 (5)151
Table 1

Hydrogen-bond geometry (, )

Cg1 and Cg2 are the centroids of the C10C15 and C10AC15A rings, respectively.

DHA DHHA D A DHA
O3H3OO2i 0.89(4)2.04(4)2.856(3)153(4)
C3H3A Cg1ii 0.932.743.596(5)153
C3H3A Cg2ii 0.932.923.756(5)151

Symmetry codes: (i) ; (ii) .

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Authors:  Kapil Juvale; Katja Stefan; Michael Wiese
Journal:  Eur J Med Chem       Date:  2013-06-25       Impact factor: 6.514

6.  Anti-HIV agents. Part 55: 3'R,4'R-Di-(O)-(-)-camphanoyl-2',2'-dimethyldihydropyrano[2,3-f]chromone (DCP), a novel anti-HIV agent.

Authors:  Donglei Yu; Arnold Brossi; Nicole Kilgore; Carl Wild; Graham Allaway; Kuo-Hsiung Lee
Journal:  Bioorg Med Chem Lett       Date:  2003-05-05       Impact factor: 2.823

7.  Crystal structure refinement with SHELXL.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr C Struct Chem       Date:  2015-01-01       Impact factor: 1.172

8.  7-Meth-oxy-2-phenyl-chroman-4-one.

Authors:  Agata Piaskowska; Maciej Hodorowicz; Wojciech Nitek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-01-23
  8 in total

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