Literature DB >> 25878864

Crystal structure of 2-methyl-4-[(thio-phen-2-yl)methyl-idene]-1,3-oxazol-5(4H)-one.

Preetika Sharma1, K N Subbulakshmi2, B Narayana2, K Byrappa3, Rajni Kant1.   

Abstract

The asymmetric unit of the title compound, C9H7NO2S, contains two crystallographically independent mol-ecules (A and B). Both mol-ecules are almost planar [maximum deviations = 0.047 (1) and 0.090 (1) Å, respectively, for the S atoms] with the oxazole and thio-phene rings being inclined to one another by 2.65 (16)° in mol-ecule A and by 4.55 (15)° in mol-ecule B. In the crystal, the individual mol-ecules are linked via C-H⋯O hydrogen bonds, forming -A-B-A-B- chains along the [10-1] direction. The chains are linked via C-H⋯π and π-π inter-actions [inter-centroid distances = 3.767 (2) and 3.867 (2) Å] involving inversion-related oxazole and thio-phene rings in both mol-ecules, forming a three-dimensional structure.

Entities:  

Keywords:  1,3-oxazol-5(4H)-one; C—H⋯π and π–π inter­actions; azlactones; crystal structure; hydrogen bonding

Year:  2015        PMID: 25878864      PMCID: PMC4384586          DOI: 10.1107/S2056989015000833

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For the different roles of 1,3-oxazol-5(4H)-one derivatives, see: Etschenberg et al. (1980 ▸); Reed & Kingston (1986 ▸). For the crystal structure of 2-(naphthalen-1-yl)-4-[(thio­phen-2-yl)methyl­idene]-1,3-oxazol-5(4H)-one, see: Gündoğdu et al. (2011b ▸). For the crystal structures of some oxazole compounds, see: Gündoğdu et al. (2011a ▸); Sun & Cui (2008 ▸); Huang et al. (2012 ▸); Asiri & Ng (2009 ▸).

Experimental

Crystal data

C9H7NO2S M = 193.22 Monoclinic, a = 12.2264 (11) Å b = 9.8581 (7) Å c = 15.8735 (13) Å β = 112.129 (10)° V = 1772.3 (2) Å3 Z = 8 Mo Kα radiation μ = 0.33 mm−1 T = 293 K 0.30 × 0.20 × 0.20 mm

Data collection

Oxford Diffraction Xcalibur Sapphire3 diffractometer Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2010 ▸) T min = 0.842, T max = 1.000 7052 measured reflections 3472 independent reflections 2477 reflections with I > 2σ(I) R int = 0.029

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.126 S = 1.04 3472 reflections 237 parameters H-atom parameters constrained Δρmax = 0.23 e Å−3 Δρmin = −0.34 e Å−3

Data collection: CrysAlis PRO (Oxford Diffraction, 2010 ▸); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL97 (Sheldrick, 2015 ▸); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▸); software used to prepare material for publication: PLATON (Spek, 2009 ▸). Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S2056989015000833/su5054sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015000833/su5054Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015000833/su5054Isup3.cml Click here for additional data file. . DOI: 10.1107/S2056989015000833/su5054fig1.tif A view of the mol­ecular structure of the two independent mol­ecules of the title compound, with atom labelling. Displacement ellipsoids are drawn at the 40% probability level. Click here for additional data file. b A B . DOI: 10.1107/S2056989015000833/su5054fig2.tif A view along the b axis of the crystal packing of the title compound. The C—H⋯O ydrogen bonds are shown as dashed lines (see Table 1 for details; mol­ecule A blue; mol­ecule B red). CCDC reference: 1043723 Additional supporting information: crystallographic information; 3D view; checkCIF report
C9H7NO2SF(000) = 800
Mr = 193.22Dx = 1.448 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 2325 reflections
a = 12.2264 (11) Åθ = 4.2–29.2°
b = 9.8581 (7) ŵ = 0.33 mm1
c = 15.8735 (13) ÅT = 293 K
β = 112.129 (10)°Block, white
V = 1772.3 (2) Å30.30 × 0.20 × 0.20 mm
Z = 8
Oxford Diffraction Xcalibur Sapphire3 diffractometer3472 independent reflections
Radiation source: fine-focus sealed tube2477 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.029
ω scansθmax = 26.0°, θmin = 3.9°
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2010)h = −15→9
Tmin = 0.842, Tmax = 1.000k = −12→10
7052 measured reflectionsl = −19→18
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.045Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.126H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0531P)2 + 0.4552P] where P = (Fo2 + 2Fc2)/3
3472 reflections(Δ/σ)max = 0.001
237 parametersΔρmax = 0.23 e Å3
0 restraintsΔρmin = −0.34 e Å3
Experimental. CrysAlis PRO, Agilent Technologies, Version 1.171.36.28 (release 01–02-2013 CrysAlis171. NET) (compiled Feb 1 2013,16:14:44) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S1A0.74841 (6)0.94228 (7)0.01475 (4)0.0500 (2)
S1B0.40438 (6)1.07198 (8)0.32806 (5)0.0541 (2)
O1B0.38555 (17)1.22165 (19)0.63729 (11)0.0545 (5)
O1A0.45883 (16)1.33631 (19)0.00039 (13)0.0563 (5)
N1A0.57961 (19)1.1832 (2)−0.02547 (14)0.0480 (5)
N1B0.42087 (19)1.2003 (2)0.50804 (14)0.0458 (5)
C5B0.2829 (2)1.0126 (3)0.44127 (16)0.0433 (6)
H5B0.22750.95720.45130.052*
O2B0.2489 (2)1.0587 (2)0.61918 (14)0.0730 (7)
C4A0.7190 (2)0.9654 (3)0.11220 (16)0.0415 (6)
O2A0.47256 (17)1.2787 (2)0.14163 (13)0.0672 (6)
C5A0.6410 (2)1.0659 (3)0.12201 (17)0.0445 (6)
H5A0.63151.06620.17740.053*
C6A0.5796 (2)1.1602 (3)0.06201 (17)0.0433 (6)
C4B0.3004 (2)0.9890 (2)0.35782 (16)0.0403 (6)
C7A0.5013 (2)1.2586 (3)0.07877 (19)0.0500 (7)
C3B0.2367 (2)0.8952 (3)0.29012 (16)0.0442 (6)
H3B0.17680.83960.29300.053*
C8A0.5108 (2)1.2838 (3)−0.05642 (18)0.0504 (7)
C3A0.7808 (2)0.8734 (3)0.17737 (17)0.0517 (7)
H3A0.77700.86940.23470.062*
C6B0.3358 (2)1.1033 (3)0.50605 (16)0.0430 (6)
C7B0.3128 (2)1.1171 (3)0.59019 (18)0.0511 (7)
C8B0.4457 (2)1.2636 (3)0.58308 (18)0.0496 (7)
C2A0.8503 (3)0.7863 (3)0.1489 (2)0.0606 (8)
H2A0.89770.71840.18520.073*
C9B0.5305 (3)1.3745 (3)0.6211 (2)0.0647 (8)
H9B10.59951.33990.66890.097*
H9B20.49491.44350.64500.097*
H9B30.55261.41250.57410.097*
C1B0.3648 (3)0.9860 (3)0.22912 (18)0.0571 (7)
H1B0.40040.99850.18720.068*
C2B0.2765 (3)0.8976 (3)0.21714 (18)0.0581 (7)
H2B0.24460.84320.16580.070*
C1A0.8410 (3)0.8114 (3)0.06350 (19)0.0560 (7)
H1A0.88100.76240.03400.067*
C9A0.4771 (3)1.3503 (3)−0.1459 (2)0.0706 (9)
H9A10.51861.3084−0.17980.106*
H9A20.49721.4448−0.13750.106*
H9A30.39361.3408−0.17870.106*
U11U22U33U12U13U23
S1A0.0587 (4)0.0545 (4)0.0420 (4)0.0065 (3)0.0249 (3)−0.0013 (3)
S1B0.0542 (4)0.0596 (5)0.0523 (4)−0.0088 (4)0.0244 (3)0.0029 (3)
O1B0.0650 (12)0.0575 (12)0.0457 (10)−0.0038 (10)0.0261 (9)−0.0097 (9)
O1A0.0525 (11)0.0511 (11)0.0619 (12)0.0123 (10)0.0176 (9)−0.0031 (10)
N1A0.0516 (13)0.0454 (13)0.0478 (12)0.0037 (11)0.0197 (10)−0.0024 (11)
N1B0.0505 (13)0.0448 (12)0.0431 (12)−0.0026 (11)0.0187 (10)−0.0015 (10)
C5B0.0453 (14)0.0428 (14)0.0458 (14)−0.0010 (13)0.0217 (12)0.0025 (13)
O2B0.0929 (17)0.0800 (15)0.0692 (13)−0.0172 (13)0.0566 (13)−0.0081 (11)
C4A0.0420 (13)0.0436 (14)0.0419 (13)−0.0010 (12)0.0190 (11)−0.0035 (12)
O2A0.0638 (13)0.0782 (14)0.0669 (13)0.0154 (11)0.0327 (11)−0.0119 (11)
C5A0.0471 (15)0.0476 (16)0.0429 (14)0.0002 (13)0.0217 (12)−0.0041 (13)
C6A0.0416 (14)0.0434 (15)0.0461 (14)0.0008 (12)0.0178 (11)−0.0062 (13)
C4B0.0417 (13)0.0380 (14)0.0439 (13)0.0027 (12)0.0191 (11)0.0049 (12)
C7A0.0422 (15)0.0516 (17)0.0550 (16)0.0030 (13)0.0169 (13)−0.0084 (14)
C3B0.0474 (15)0.0451 (15)0.0429 (14)−0.0044 (13)0.0201 (12)−0.0036 (12)
C8A0.0478 (15)0.0485 (16)0.0525 (16)−0.0018 (14)0.0160 (13)−0.0062 (14)
C3A0.0594 (17)0.0580 (17)0.0428 (14)0.0134 (15)0.0252 (13)0.0071 (14)
C6B0.0462 (14)0.0445 (14)0.0421 (13)0.0019 (13)0.0209 (11)0.0018 (12)
C7B0.0584 (17)0.0526 (17)0.0474 (15)0.0049 (15)0.0258 (14)−0.0014 (14)
C8B0.0521 (16)0.0468 (16)0.0496 (15)0.0044 (13)0.0189 (13)0.0014 (13)
C2A0.0675 (19)0.0581 (18)0.0624 (18)0.0195 (16)0.0317 (16)0.0121 (15)
C9B0.0684 (19)0.0578 (19)0.0632 (18)−0.0108 (17)0.0194 (16)−0.0138 (16)
C1B0.0615 (18)0.071 (2)0.0457 (15)0.0025 (17)0.0287 (14)0.0065 (15)
C2B0.0682 (19)0.0596 (18)0.0437 (15)−0.0025 (16)0.0181 (14)−0.0075 (14)
C1A0.0621 (17)0.0513 (17)0.0645 (18)0.0108 (15)0.0350 (15)−0.0046 (15)
C9A0.081 (2)0.064 (2)0.0627 (19)0.0044 (18)0.0216 (16)0.0078 (17)
S1A—C1A1.698 (3)C6A—C7A1.456 (3)
S1A—C4A1.730 (2)C4B—C3B1.409 (3)
S1B—C1B1.687 (3)C3B—C2B1.416 (3)
S1B—C4B1.721 (2)C3B—H3B0.9300
O1B—C7B1.383 (3)C8A—C9A1.475 (4)
O1B—C8B1.389 (3)C3A—C2A1.397 (4)
O1A—C7A1.385 (3)C3A—H3A0.9300
O1A—C8A1.385 (3)C6B—C7B1.471 (3)
N1A—C8A1.273 (3)C8B—C9B1.471 (4)
N1A—C6A1.407 (3)C2A—C1A1.341 (4)
N1B—C8B1.276 (3)C2A—H2A0.9300
N1B—C6B1.405 (3)C9B—H9B10.9600
C5B—C6B1.332 (3)C9B—H9B20.9600
C5B—C4B1.438 (3)C9B—H9B30.9600
C5B—H5B0.9300C1B—C2B1.344 (4)
O2B—C7B1.194 (3)C1B—H1B0.9300
C4A—C3A1.369 (3)C2B—H2B0.9300
C4A—C5A1.424 (3)C1A—H1A0.9300
O2A—C7A1.193 (3)C9A—H9A10.9600
C5A—C6A1.340 (3)C9A—H9A20.9600
C5A—H5A0.9300C9A—H9A30.9600
C1A—S1A—C4A91.16 (12)C5B—C6B—N1B127.9 (2)
C1B—S1B—C4B91.96 (13)C5B—C6B—C7B124.1 (2)
C7B—O1B—C8B105.64 (19)N1B—C6B—C7B108.1 (2)
C7A—O1A—C8A105.7 (2)O2B—C7B—O1B122.2 (2)
C8A—N1A—C6A105.1 (2)O2B—C7B—C6B133.0 (3)
C8B—N1B—C6B105.5 (2)O1B—C7B—C6B104.8 (2)
C6B—C5B—C4B128.5 (2)N1B—C8B—O1B116.0 (2)
C6B—C5B—H5B115.7N1B—C8B—C9B129.0 (3)
C4B—C5B—H5B115.7O1B—C8B—C9B115.1 (2)
C3A—C4A—C5A125.5 (2)C1A—C2A—C3A112.5 (3)
C3A—C4A—S1A110.28 (18)C1A—C2A—H2A123.7
C5A—C4A—S1A124.3 (2)C3A—C2A—H2A123.7
C6A—C5A—C4A128.6 (2)C8B—C9B—H9B1109.5
C6A—C5A—H5A115.7C8B—C9B—H9B2109.5
C4A—C5A—H5A115.7H9B1—C9B—H9B2109.5
C5A—C6A—N1A127.2 (2)C8B—C9B—H9B3109.5
C5A—C6A—C7A124.3 (2)H9B1—C9B—H9B3109.5
N1A—C6A—C7A108.5 (2)H9B2—C9B—H9B3109.5
C3B—C4B—C5B125.3 (2)C2B—C1B—S1B113.0 (2)
C3B—C4B—S1B110.85 (17)C2B—C1B—H1B123.5
C5B—C4B—S1B123.87 (19)S1B—C1B—H1B123.5
O2A—C7A—O1A122.1 (2)C1B—C2B—C3B113.6 (2)
O2A—C7A—C6A133.2 (3)C1B—C2B—H2B123.2
O1A—C7A—C6A104.7 (2)C3B—C2B—H2B123.2
C4B—C3B—C2B110.6 (2)C2A—C1A—S1A112.9 (2)
C4B—C3B—H3B124.7C2A—C1A—H1A123.6
C2B—C3B—H3B124.7S1A—C1A—H1A123.6
N1A—C8A—O1A116.0 (2)C8A—C9A—H9A1109.5
N1A—C8A—C9A128.5 (3)C8A—C9A—H9A2109.5
O1A—C8A—C9A115.5 (2)H9A1—C9A—H9A2109.5
C4A—C3A—C2A113.1 (2)C8A—C9A—H9A3109.5
C4A—C3A—H3A123.4H9A1—C9A—H9A3109.5
C2A—C3A—H3A123.4H9A2—C9A—H9A3109.5
C1A—S1A—C4A—C3A0.2 (2)C7A—O1A—C8A—C9A179.2 (2)
C1A—S1A—C4A—C5A−179.6 (2)C5A—C4A—C3A—C2A179.7 (3)
C3A—C4A—C5A—C6A178.7 (3)S1A—C4A—C3A—C2A0.0 (3)
S1A—C4A—C5A—C6A−1.5 (4)C4B—C5B—C6B—N1B1.1 (4)
C4A—C5A—C6A—N1A−1.2 (4)C4B—C5B—C6B—C7B−178.7 (2)
C4A—C5A—C6A—C7A179.7 (3)C8B—N1B—C6B—C5B−179.8 (3)
C8A—N1A—C6A—C5A−178.6 (3)C8B—N1B—C6B—C7B0.0 (3)
C8A—N1A—C6A—C7A0.6 (3)C8B—O1B—C7B—O2B179.9 (3)
C6B—C5B—C4B—C3B−176.6 (3)C8B—O1B—C7B—C6B−0.1 (3)
C6B—C5B—C4B—S1B4.0 (4)C5B—C6B—C7B—O2B−0.2 (5)
C1B—S1B—C4B—C3B0.1 (2)N1B—C6B—C7B—O2B180.0 (3)
C1B—S1B—C4B—C5B179.6 (2)C5B—C6B—C7B—O1B179.9 (2)
C8A—O1A—C7A—O2A−180.0 (3)N1B—C6B—C7B—O1B0.1 (3)
C8A—O1A—C7A—C6A−0.1 (3)C6B—N1B—C8B—O1B−0.1 (3)
C5A—C6A—C7A—O2A−1.2 (5)C6B—N1B—C8B—C9B179.1 (3)
N1A—C6A—C7A—O2A179.5 (3)C7B—O1B—C8B—N1B0.2 (3)
C5A—C6A—C7A—O1A178.9 (2)C7B—O1B—C8B—C9B−179.2 (2)
N1A—C6A—C7A—O1A−0.3 (3)C4A—C3A—C2A—C1A−0.2 (4)
C5B—C4B—C3B—C2B−179.9 (2)C4B—S1B—C1B—C2B0.2 (2)
S1B—C4B—C3B—C2B−0.4 (3)S1B—C1B—C2B—C3B−0.4 (3)
C6A—N1A—C8A—O1A−0.7 (3)C4B—C3B—C2B—C1B0.5 (3)
C6A—N1A—C8A—C9A−179.2 (3)C3A—C2A—C1A—S1A0.4 (4)
C7A—O1A—C8A—N1A0.5 (3)C4A—S1A—C1A—C2A−0.3 (2)
D—H···AD—HH···AD···AD—H···A
C3A—H3A···O2Bi0.932.563.449 (3)161
C3B—H3B···O2Aii0.932.493.336 (3)151
C9B—H9B2···Cg1iii0.962.963.783 (4)145
Table 1

Hydrogen-bond geometry (, )

Cg1 is the centroid of the thiophene ring S1A/C1AC4A.

DHA DHHA D A DHA
C3AH3AO2B i 0.932.563.449(3)161
C3BH3BO2A ii 0.932.493.336(3)151
C9BH9B2Cg1iii 0.962.963.783(4)145

Symmetry codes: (i) ; (ii) ; (iii) .

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