Literature DB >> 25878851

Crystal structure of isobutyl 4-(2-chloro-phen-yl)-5-cyano-6-{(E)-[(di-methyl-amino)-methyl-idene]amino}-2-methyl-4H-pyran-3-carboxyl-ate.

T Mohandas1, C Udhaya Kumar2, S Aruna Devi3, B Arul Prakasam2, P Sakthivel4, T Vidhyasagar2.   

Abstract

In the title compound, C21H24ClN3O3, the dihedral angle between the pyran ring (r.m.s. deviation = 0.037 Å) and the chloro-benzene ring is 88.56 (14)°. In the crystal, the mol-ecules are linked by C-H⋯O inter-actions, generating C(7) (001) chains.

Entities:  

Keywords:  C—H⋯O inter­actions; crystal structure; pyran derivative

Year:  2015        PMID: 25878851      PMCID: PMC4384599          DOI: 10.1107/S2056989015000079

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For the biological activities of pyran derivatives, see: Kitamura et al. (2006 ▸); Tangmouo et al. (2006 ▸); Cocco et al. (2003 ▸). For related structures, see: Park et al. (2012a ▸,b ▸).

Experimental

Crystal data

C21H24ClN3O3 M = 401.88 Monoclinic, a = 15.6836 (16) Å b = 15.2523 (13) Å c = 9.3283 (8) Å β = 105.016 (2)° V = 2155.2 (3) Å3 Z = 4 Mo Kα radiation μ = 0.20 mm−1 T = 293 K 0.28 × 0.26 × 0.25 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2008 ▸) T min = 0.985, T max = 0.989 28118 measured reflections 5524 independent reflections 3062 reflections with I > 2σ(I) R int = 0.037

Refinement

R[F 2 > 2σ(F 2)] = 0.061 wR(F 2) = 0.217 S = 1.00 5524 reflections 258 parameters H-atom parameters constrained Δρmax = 0.60 e Å−3 Δρmin = −0.44 e Å−3

Data collection: APEX2 (Bruker, 2008 ▸); cell refinement: SAINT (Bruker, 2008 ▸); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▸); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▸) and Mercury (Macrae et al., 2008 ▸); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▸). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S2056989015000079/hb7341sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015000079/hb7341Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015000079/hb7341Isup3.cml Click here for additional data file. . DOI: 10.1107/S2056989015000079/hb7341fig1.tif The mol­ecular structure of the title compound with displacement ellipsoids drawn at 30% probability level. Click here for additional data file. c . DOI: 10.1107/S2056989015000079/hb7341fig2.tif Part of crystal packing of the title compound showing the formation of C(7) chains running parallel to c axis. CCDC reference: 1041846 Additional supporting information: crystallographic information; 3D view; checkCIF report
C21H24ClN3O3F(000) = 848
Mr = 401.88Dx = 1.239 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
a = 15.6836 (16) ÅCell parameters from 3064 reflections
b = 15.2523 (13) Åθ = 1.3–29.7°
c = 9.3283 (8) ŵ = 0.20 mm1
β = 105.016 (2)°T = 293 K
V = 2155.2 (3) Å3Block, colourless
Z = 40.28 × 0.26 × 0.25 mm
Bruker APEXII CCD diffractometer5524 independent reflections
Radiation source: fine-focus sealed tube3062 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.037
ω & φ scansθmax = 29.7°, θmin = 2.6°
Absorption correction: multi-scan (SADABS; Bruker, 2008)h = −21→21
Tmin = 0.985, Tmax = 0.989k = −20→20
28118 measured reflectionsl = −12→12
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.061Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.217H-atom parameters constrained
S = 1.00w = 1/[σ2(Fo2) + (0.1039P)2 + 1.1568P] where P = (Fo2 + 2Fc2)/3
5524 reflections(Δ/σ)max = 0.033
258 parametersΔρmax = 0.60 e Å3
0 restraintsΔρmin = −0.44 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.3162 (2)0.1810 (2)−0.0790 (4)0.0762 (10)
H1A0.33710.2362−0.03390.114*
H1B0.25460.1748−0.08430.114*
H1C0.32470.1788−0.17720.114*
C20.3449 (2)0.0213 (2)−0.0425 (4)0.0722 (10)
H2A0.3928−0.0015−0.07790.108*
H2B0.29180.0208−0.12160.108*
H2C0.3370−0.01450.03780.108*
C30.42724 (17)0.12629 (16)0.1321 (3)0.0441 (6)
H30.43940.18400.16290.053*
C40.53764 (16)0.08439 (15)0.3322 (3)0.0380 (5)
C50.58829 (15)0.02517 (15)0.4233 (3)0.0381 (5)
C60.57139 (17)−0.06580 (16)0.3917 (3)0.0439 (6)
C70.66429 (15)0.04929 (15)0.5534 (3)0.0378 (5)
H70.65490.02200.64320.045*
C80.66744 (16)0.14771 (16)0.5739 (3)0.0406 (6)
C90.61304 (16)0.20215 (16)0.4809 (3)0.0421 (6)
C100.6059 (2)0.29947 (17)0.4866 (4)0.0579 (8)
H10A0.60890.31740.58640.087*
H10B0.55060.31790.42220.087*
H10C0.65350.32580.45480.087*
C110.73241 (19)0.18383 (19)0.7044 (3)0.0515 (7)
C120.8380 (2)0.1463 (3)0.9286 (3)0.0742 (10)
H12A0.81750.19970.96520.089*
H12B0.84110.10131.00320.089*
C130.9252 (3)0.1612 (4)0.9120 (5)0.1227 (19)
H130.92040.21770.86060.147*
C140.9880 (3)0.1800 (5)1.0641 (6)0.164 (3)
H14A0.99000.13001.12750.246*
H14B0.96740.23011.10740.246*
H14C1.04610.19151.05270.246*
C150.9634 (3)0.1055 (4)0.8250 (6)0.134 (2)
H15A0.96100.04590.85710.202*
H15B1.02380.12210.83610.202*
H15C0.93140.11050.72260.202*
C160.74957 (16)0.01276 (16)0.5256 (3)0.0393 (5)
C170.78475 (18)0.0516 (2)0.4190 (3)0.0512 (7)
H170.75850.10190.37060.061*
C180.8583 (2)0.0169 (3)0.3838 (4)0.0713 (9)
H180.88140.04400.31290.086*
C190.8970 (2)−0.0578 (3)0.4536 (4)0.0779 (11)
H190.9457−0.08170.42840.094*
C200.8647 (2)−0.0972 (2)0.5595 (4)0.0667 (9)
H200.8911−0.14770.60680.080*
C210.79209 (18)−0.06106 (17)0.5962 (3)0.0473 (6)
N10.36500 (16)0.11034 (14)0.0093 (3)0.0509 (6)
N20.47213 (14)0.06290 (13)0.2112 (2)0.0424 (5)
N30.56164 (18)−0.13952 (16)0.3724 (3)0.0672 (7)
O10.55106 (12)0.17257 (11)0.3586 (2)0.0477 (5)
O20.74819 (18)0.26007 (15)0.7309 (3)0.0899 (9)
O30.77370 (14)0.11992 (14)0.7944 (2)0.0611 (6)
Cl0.75622 (6)−0.11215 (5)0.73714 (9)0.0711 (3)
U11U22U33U12U13U23
C10.081 (2)0.0587 (19)0.072 (2)0.0163 (17)−0.0101 (18)0.0144 (16)
C20.082 (2)0.0533 (18)0.065 (2)−0.0039 (16)−0.0092 (17)−0.0108 (15)
C30.0434 (14)0.0369 (12)0.0510 (15)−0.0010 (11)0.0101 (12)0.0006 (11)
C40.0383 (12)0.0324 (11)0.0448 (13)−0.0027 (10)0.0137 (11)−0.0002 (10)
C50.0380 (12)0.0329 (12)0.0443 (13)−0.0017 (10)0.0122 (10)−0.0007 (10)
C60.0420 (13)0.0377 (13)0.0485 (14)0.0014 (11)0.0054 (11)0.0003 (11)
C70.0397 (13)0.0356 (12)0.0376 (12)−0.0014 (10)0.0091 (10)0.0011 (10)
C80.0416 (13)0.0394 (13)0.0425 (13)−0.0029 (10)0.0143 (11)−0.0086 (11)
C90.0432 (13)0.0375 (12)0.0475 (14)−0.0029 (10)0.0155 (11)−0.0062 (11)
C100.0623 (18)0.0346 (13)0.077 (2)0.0009 (12)0.0180 (16)−0.0100 (13)
C110.0519 (16)0.0524 (16)0.0514 (15)−0.0016 (13)0.0155 (13)−0.0158 (13)
C120.067 (2)0.103 (3)0.0459 (17)−0.0102 (19)0.0028 (15)−0.0148 (18)
C130.073 (3)0.203 (6)0.083 (3)−0.002 (3)0.003 (2)−0.047 (3)
C140.078 (3)0.288 (9)0.105 (4)−0.023 (4)−0.012 (3)−0.078 (5)
C150.090 (3)0.197 (6)0.117 (4)0.002 (4)0.027 (3)−0.057 (4)
C160.0407 (13)0.0389 (12)0.0366 (12)−0.0036 (10)0.0067 (10)−0.0060 (10)
C170.0481 (15)0.0588 (17)0.0477 (15)−0.0009 (13)0.0142 (12)0.0013 (13)
C180.0573 (19)0.102 (3)0.0607 (19)−0.0026 (19)0.0263 (16)−0.0055 (19)
C190.0530 (19)0.107 (3)0.076 (2)0.0185 (19)0.0200 (17)−0.019 (2)
C200.0556 (18)0.068 (2)0.070 (2)0.0194 (15)0.0043 (16)−0.0088 (17)
C210.0467 (14)0.0450 (14)0.0462 (14)0.0031 (11)0.0049 (11)−0.0036 (11)
N10.0532 (13)0.0436 (12)0.0497 (13)0.0018 (10)0.0022 (11)0.0034 (10)
N20.0418 (11)0.0361 (11)0.0463 (12)−0.0006 (9)0.0059 (9)0.0008 (9)
N30.0719 (17)0.0366 (13)0.0837 (19)−0.0026 (12)0.0030 (14)−0.0057 (12)
O10.0537 (11)0.0324 (9)0.0525 (10)−0.0020 (8)0.0056 (8)0.0006 (8)
O20.0990 (19)0.0523 (13)0.0964 (18)−0.0006 (12)−0.0142 (15)−0.0325 (12)
O30.0618 (12)0.0690 (14)0.0450 (11)−0.0063 (10)0.0002 (9)−0.0074 (10)
Cl0.0811 (6)0.0592 (5)0.0707 (5)0.0063 (4)0.0155 (4)0.0217 (4)
C1—N11.448 (4)C11—O21.201 (3)
C1—H1A0.9600C11—O31.339 (4)
C1—H1B0.9600C12—C131.433 (6)
C1—H1C0.9600C12—O31.447 (3)
C2—N11.449 (4)C12—H12A0.9700
C2—H2A0.9600C12—H12B0.9700
C2—H2B0.9600C13—C151.411 (7)
C2—H2C0.9600C13—C141.531 (6)
C3—N21.306 (3)C13—H130.9800
C3—N11.321 (3)C14—H14A0.9600
C3—H30.9300C14—H14B0.9600
C4—C51.349 (3)C14—H14C0.9600
C4—N21.355 (3)C15—H15A0.9600
C4—O11.374 (3)C15—H15B0.9600
C5—C61.429 (3)C15—H15C0.9600
C5—C71.510 (3)C16—C211.385 (4)
C6—N31.143 (3)C16—C171.389 (4)
C7—C81.513 (3)C17—C181.385 (4)
C7—C161.532 (3)C17—H170.9300
C7—H70.9800C18—C191.373 (5)
C8—C91.337 (4)C18—H180.9300
C8—C111.476 (4)C19—C201.361 (5)
C9—O11.370 (3)C19—H190.9300
C9—C101.491 (4)C20—C211.385 (4)
C10—H10A0.9600C20—H200.9300
C10—H10B0.9600C21—Cl1.742 (3)
C10—H10C0.9600
N1—C1—H1A109.5C13—C12—H12B108.5
N1—C1—H1B109.5O3—C12—H12B108.5
H1A—C1—H1B109.5H12A—C12—H12B107.5
N1—C1—H1C109.5C15—C13—C12121.7 (5)
H1A—C1—H1C109.5C15—C13—C14112.2 (5)
H1B—C1—H1C109.5C12—C13—C14109.4 (4)
N1—C2—H2A109.5C15—C13—H13103.8
N1—C2—H2B109.5C12—C13—H13103.8
H2A—C2—H2B109.5C14—C13—H13103.8
N1—C2—H2C109.5C13—C14—H14A109.5
H2A—C2—H2C109.5C13—C14—H14B109.5
H2B—C2—H2C109.5H14A—C14—H14B109.5
N2—C3—N1121.5 (2)C13—C14—H14C109.5
N2—C3—H3119.2H14A—C14—H14C109.5
N1—C3—H3119.2H14B—C14—H14C109.5
C5—C4—N2124.0 (2)C13—C15—H15A109.5
C5—C4—O1120.3 (2)C13—C15—H15B109.5
N2—C4—O1115.7 (2)H15A—C15—H15B109.5
C4—C5—C6118.2 (2)C13—C15—H15C109.5
C4—C5—C7123.8 (2)H15A—C15—H15C109.5
C6—C5—C7117.9 (2)H15B—C15—H15C109.5
N3—C6—C5176.4 (3)C21—C16—C17117.1 (2)
C5—C7—C8109.67 (19)C21—C16—C7123.3 (2)
C5—C7—C16108.51 (19)C17—C16—C7119.5 (2)
C8—C7—C16112.41 (19)C18—C17—C16121.1 (3)
C5—C7—H7108.7C18—C17—H17119.5
C8—C7—H7108.7C16—C17—H17119.5
C16—C7—H7108.7C19—C18—C17119.9 (3)
C9—C8—C11119.4 (2)C19—C18—H18120.1
C9—C8—C7122.7 (2)C17—C18—H18120.1
C11—C8—C7117.9 (2)C20—C19—C18120.5 (3)
C8—C9—O1122.2 (2)C20—C19—H19119.7
C8—C9—C10129.5 (2)C18—C19—H19119.7
O1—C9—C10108.3 (2)C19—C20—C21119.2 (3)
C9—C10—H10A109.5C19—C20—H20120.4
C9—C10—H10B109.5C21—C20—H20120.4
H10A—C10—H10B109.5C20—C21—C16122.1 (3)
C9—C10—H10C109.5C20—C21—Cl117.1 (2)
H10A—C10—H10C109.5C16—C21—Cl120.8 (2)
H10B—C10—H10C109.5C3—N1—C1121.2 (2)
O2—C11—O3122.4 (3)C3—N1—C2120.6 (2)
O2—C11—C8126.3 (3)C1—N1—C2118.1 (2)
O3—C11—C8111.3 (2)C3—N2—C4118.2 (2)
C13—C12—O3114.9 (3)C9—O1—C4120.97 (19)
C13—C12—H12A108.5C11—O3—C12117.1 (3)
O3—C12—H12A108.5
N2—C4—C5—C6−0.7 (4)C5—C7—C16—C1772.4 (3)
O1—C4—C5—C6179.6 (2)C8—C7—C16—C17−49.1 (3)
N2—C4—C5—C7176.7 (2)C21—C16—C17—C181.0 (4)
O1—C4—C5—C7−3.0 (4)C7—C16—C17—C18−175.6 (3)
C4—C5—C6—N3175 (5)C16—C17—C18—C190.7 (5)
C7—C5—C6—N3−3 (5)C17—C18—C19—C20−1.2 (5)
C4—C5—C7—C86.1 (3)C18—C19—C20—C210.0 (5)
C6—C5—C7—C8−176.4 (2)C19—C20—C21—C161.8 (5)
C4—C5—C7—C16−117.0 (3)C19—C20—C21—Cl−177.8 (3)
C6—C5—C7—C1660.5 (3)C17—C16—C21—C20−2.3 (4)
C5—C7—C8—C9−4.2 (3)C7—C16—C21—C20174.2 (2)
C16—C7—C8—C9116.6 (3)C17—C16—C21—Cl177.3 (2)
C5—C7—C8—C11174.5 (2)C7—C16—C21—Cl−6.3 (3)
C16—C7—C8—C11−64.7 (3)N2—C3—N1—C1−179.2 (3)
C11—C8—C9—O1−179.6 (2)N2—C3—N1—C2−0.5 (4)
C7—C8—C9—O1−0.9 (4)N1—C3—N2—C4177.1 (2)
C11—C8—C9—C10−0.3 (4)C5—C4—N2—C3179.5 (2)
C7—C8—C9—C10178.4 (3)O1—C4—N2—C3−0.8 (3)
C9—C8—C11—O2−7.4 (5)C8—C9—O1—C45.0 (4)
C7—C8—C11—O2173.9 (3)C10—C9—O1—C4−174.5 (2)
C9—C8—C11—O3172.5 (2)C5—C4—O1—C9−3.0 (3)
C7—C8—C11—O3−6.3 (3)N2—C4—O1—C9177.3 (2)
O3—C12—C13—C15−41.0 (7)O2—C11—O3—C121.1 (4)
O3—C12—C13—C14−174.6 (5)C8—C11—O3—C12−178.7 (2)
C5—C7—C16—C21−104.0 (3)C13—C12—O3—C11−86.1 (5)
C8—C7—C16—C21134.5 (2)
D—H···AD—HH···AD···AD—H···A
C17—H17···O2i0.932.463.3368157
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
C17H17O2i 0.932.463.3368157

Symmetry code: (i) .

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