Literature DB >> 25877305

A decade of structural variants: description, history and methods to detect structural variation.

Geòrgia Escaramís, Elisa Docampo, Raquel Rabionet.   

Abstract

In the past decade, the view on genomic structural variation (SV) has been changed completely. SVs, previously considered rare events, are now recognized as the largest source of interindividual genetic variation affecting more bases than single nucleotide polymorphisms, variable number of tandem repeats and other small genetic variants. They have also been shown to play a role in phenotypic variation and in disease. In this review, the authors will provide an introduction to SV; a short historical perspective on the research of this source of genomic variation; a description of the types of structural variants, and on how they may have arisen; and an overview on methods of detecting structural variants, focusing on the analysis of high-throughput sequencing data.
© The Author 2015. Published by Oxford University Press. All rights reserved. For permissions, please email: journals.permissions@oup.com.

Keywords:  copy number variants; structural variation

Mesh:

Year:  2015        PMID: 25877305     DOI: 10.1093/bfgp/elv014

Source DB:  PubMed          Journal:  Brief Funct Genomics        ISSN: 2041-2649            Impact factor:   4.241


  36 in total

1.  Multi-ethnic SULT1A1 copy number profiling with multiplex ligation-dependent probe amplification.

Authors:  Raymon Vijzelaar; Mariana R Botton; Lisette Stolk; Suparna Martis; Robert J Desnick; Stuart A Scott
Journal:  Pharmacogenomics       Date:  2018-05-23       Impact factor: 2.533

Review 2.  Genetics of common complex kidney stone disease: insights from genome-wide association studies.

Authors:  Runolfur Palsson; Olafur S Indridason; Vidar O Edvardsson; Asmundur Oddsson
Journal:  Urolithiasis       Date:  2018-12-06       Impact factor: 3.436

3.  Structural variation at the CYP2C locus: Characterization of deletion and duplication alleles.

Authors:  Mariana R Botton; Xingwu Lu; Geping Zhao; Elena Repnikova; Yoshinori Seki; Andrea Gaedigk; Eric E Schadt; Lisa Edelmann; Stuart A Scott
Journal:  Hum Mutat       Date:  2019-11       Impact factor: 4.878

Review 4.  Evaluation of copy number variants for genetic hearing loss: a review of current approaches and recent findings.

Authors:  Wafaa Abbasi; Courtney E French; Shira Rockowitz; Margaret A Kenna; A Eliot Shearer
Journal:  Hum Genet       Date:  2021-11-22       Impact factor: 4.132

5.  PhenGenVar: A User-Friendly Genetic Variant Detection and Visualization Tool for Precision Medicine.

Authors:  JaeMoon Shin; Junbeom Jeon; Dawoon Jung; Kiyong Kim; Yun Joong Kim; Dong-Hoon Jeong; JeeHee Yoon
Journal:  J Pers Med       Date:  2022-06-12

Review 6.  Connecting genome structural variation with complex traits in crop plants.

Authors:  Iulian Gabur; Harmeet Singh Chawla; Rod J Snowdon; Isobel A P Parkin
Journal:  Theor Appl Genet       Date:  2018-11-17       Impact factor: 5.699

7.  Detection of copy number variants in African goats using whole genome sequence data.

Authors:  Wilson Nandolo; Gábor Mészáros; Maria Wurzinger; Liveness J Banda; Timothy N Gondwe; Henry A Mulindwa; Helen N Nakimbugwe; Emily L Clark; M Jennifer Woodward-Greene; Mei Liu; George E Liu; Curtis P Van Tassell; Benjamin D Rosen; Johann Sölkner
Journal:  BMC Genomics       Date:  2021-05-29       Impact factor: 3.969

Review 8.  Human inversions and their functional consequences.

Authors:  Marta Puig; Sònia Casillas; Sergi Villatoro; Mario Cáceres
Journal:  Brief Funct Genomics       Date:  2015-05-20       Impact factor: 4.241

9.  Large-Scale Structural Variation Detection in Subterranean Clover Subtypes Using Optical Mapping.

Authors:  Yuxuan Yuan; Zbyněk Milec; Philipp E Bayer; Jan Vrána; Jaroslav Doležel; David Edwards; William Erskine; Parwinder Kaur
Journal:  Front Plant Sci       Date:  2018-07-17       Impact factor: 5.753

10.  Clinical sequencing: is WGS the better WES?

Authors:  Janine Meienberg; Rémy Bruggmann; Konrad Oexle; Gabor Matyas
Journal:  Hum Genet       Date:  2016-01-07       Impact factor: 4.132

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