Literature DB >> 25874775

Correction: Data-driven prediction and design of bZIP coiled-coil interactions.

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Abstract

Entities:  

Year:  2015        PMID: 25874775      PMCID: PMC4398558          DOI: 10.1371/journal.pcbi.1004243

Source DB:  PubMed          Journal:  PLoS Comput Biol        ISSN: 1553-734X            Impact factor:   4.475


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An error was introduced during the production process. A fixed-width font should have been used for the sequences in Table 3. The publisher apologizes for the error.
Table 3

Binding of designed peptides to their bZIP targets

Design Target K d at 37 °C (nM) Designed sequence
XBP1-d1 1 XBP1172 ± 65EREAQLENRVAHLKEKNQELKAQNLHLKEALSEAQNRNQELKNDA
XBP1-d2XBP1≥ 5,000AETDQLENRVKDLKKKNESLKEEKRQASNKYKALLTNNRSLKVKA
XBP1-d2* 2 XBP1≥ 5,000 (269 at 23 °C)AETDQLENRVKDLKKKNESLKEEKRQAKNKLKALLTNNRSLKVKA
JUN-d1 1 JUN5.8 ± 0.7SIAATLEKEEANLEKMNKKLAAEIESLLKEKDKLESVLNYHE
JUN-d2JUN1QRALQLQKEKERLEKMNKKLAAEIESLLEERERLESVLNYHE
ATF3-d1ATF3~1,000NDLARLENKAEELKVQNRILVDERKYLQREISELHDELAAHE
ATF3-d2ATF3564NLVAQLEKKNEALKAENAALEIERIQLQDKIEELKYELAAIE
ATF3-d3ATF3≥ 5,000 (117 at 4 °C)KDAASLENKKEELKVQNRILVDERKYLQMMNSELKDELAAHE
ATF4-d1 1 ATF49.3 ± 2.3NQIKTLRTRLSKLRKDNLQLEKDIANLERKAKDLRAEKEQLEYEL
ATF5-d1 1 ATF51680 ± 1050KRIAYLRQRIAELRNENHVLESRIQRMEKEKDALQQDRDHLEYEL
ATF5-d1 3 ATF44.9 ± 1.0(same as above)

1 These four designs were chosen for further characterization.

2 A double mutant of XBP1-d2, in which serine at position 4e and tyrosine at position 5a were mutated to lysine and leucine, respectively.

3 Although ATF5 was used in the computational design, binding was tighter to ATF4, which shares 69.2% sequence identity with ATF5 in , , and positions.

Please view the corrected table here: 1 These four designs were chosen for further characterization. 2 A double mutant of XBP1-d2, in which serine at position 4e and tyrosine at position 5a were mutated to lysine and leucine, respectively. 3 Although ATF5 was used in the computational design, binding was tighter to ATF4, which shares 69.2% sequence identity with ATF5 in , , and positions.
  1 in total

1.  Data-driven prediction and design of bZIP coiled-coil interactions.

Authors:  Vladimir Potapov; Jenifer B Kaplan; Amy E Keating
Journal:  PLoS Comput Biol       Date:  2015-02-19       Impact factor: 4.475

  1 in total

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