Literature DB >> 25874672

Directed evolution 2.0: improving and deciphering enzyme properties.

Feng Cheng1, Leilei Zhu, Ulrich Schwaneberg.   

Abstract

Directed evolution has matured to a routinely applied algorithm to tailor enzyme properties to meet the demands in various applications. In order to free directed enzyme evolution from methodological restraints and to efficiently explore its potential, many different strategies have been used in directed evolution campaigns. Analysis of directed evolution campaigns reveals that traditional approaches, in which several iterative rounds of diversity generation and screening are performed, are gradually replaced by strategies which require less time, less screening efforts, and generate a molecular understanding of the targeted properties. In this review, conceptual advances in knowledge generating directed evolution strategies are summarized, compared to each other and to traditional directed evolution strategies. Finally, a 'KnowVolution' (knowledge gaining directed evolution) termed strategy is proposed.

Mesh:

Year:  2015        PMID: 25874672     DOI: 10.1039/c5cc01594d

Source DB:  PubMed          Journal:  Chem Commun (Camb)        ISSN: 1359-7345            Impact factor:   6.222


  21 in total

1.  Simultaneous directed evolution of coupled enzymes for efficient asymmetric synthesis of l-phosphinothricin.

Authors:  Feng Cheng; Qing-Hua Li; Hua-Yue Zhang; Lan Wei; Jia-Min Zhang; Ju-Mou Li; Ya-Ping Xue; Yu-Guo Zheng
Journal:  Appl Environ Microbiol       Date:  2020-12-11       Impact factor: 4.792

2.  Rational design of a disulfide bridge increases the thermostability of microbial transglutaminase.

Authors:  Mototaka Suzuki; Masayo Date; Tatsuki Kashiwagi; Eiichiro Suzuki; Keiichi Yokoyama
Journal:  Appl Microbiol Biotechnol       Date:  2022-06-22       Impact factor: 4.813

3.  Label-free enzymatic reaction monitoring in water-in-oil microdroplets using ultra-broadband multiplex coherent anti-Stokes Raman scattering spectroscopy.

Authors:  Ryo Imai; Hideaki Kano
Journal:  Biomed Opt Express       Date:  2022-02-15       Impact factor: 3.732

4.  Multiple mechanisms contribute to increased neutral lipid accumulation in yeast producing recombinant variants of plant diacylglycerol acyltransferase 1.

Authors:  Yang Xu; Guanqun Chen; Michael S Greer; Kristian Mark P Caldo; Geetha Ramakrishnan; Saleh Shah; Limin Wu; M Joanne Lemieux; Jocelyn Ozga; Randall J Weselake
Journal:  J Biol Chem       Date:  2017-09-12       Impact factor: 5.157

5.  Combined molecular docking, homology modelling and density functional theory studies to modify dioxygenase to efficiently degrade aromatic hydrocarbons.

Authors:  Xingchun Li; Zhenhua Chu; Xianyuan Du; Youli Qiu; Yu Li
Journal:  RSC Adv       Date:  2019-04-11       Impact factor: 4.036

6.  HotSpot Wizard 2.0: automated design of site-specific mutations and smart libraries in protein engineering.

Authors:  Jaroslav Bendl; Jan Stourac; Eva Sebestova; Ondrej Vavra; Milos Musil; Jan Brezovsky; Jiri Damborsky
Journal:  Nucleic Acids Res       Date:  2016-05-12       Impact factor: 16.971

7.  HotSpot Wizard 3.0: web server for automated design of mutations and smart libraries based on sequence input information.

Authors:  Lenka Sumbalova; Jan Stourac; Tomas Martinek; David Bednar; Jiri Damborsky
Journal:  Nucleic Acids Res       Date:  2018-07-02       Impact factor: 16.971

8.  A hydroquinone-specific screening system for directed P450 evolution.

Authors:  Alexandra M Weingartner; Daniel F Sauer; Gaurao V Dhoke; Mehdi D Davari; Anna Joëlle Ruff; Ulrich Schwaneberg
Journal:  Appl Microbiol Biotechnol       Date:  2018-09-06       Impact factor: 4.813

9.  Newly Identified Essential Amino Acids Affecting Chlorella ellipsoidea DGAT1 Function Revealed by Site-Directed Mutagenesis.

Authors:  Baocheng Sun; Xuejie Guo; Chengming Fan; Yuhong Chen; Jingqiao Wang; Zanmin Hu
Journal:  Int J Mol Sci       Date:  2018-11-04       Impact factor: 5.923

10.  High-Throughput Screening for Substrate Specificity-Adapted Mutants of the Nisin Dehydratase NisB.

Authors:  Xinghong Zhao; Rubén Cebrián; Yuxin Fu; Rick Rink; Tjibbe Bosma; Gert N Moll; Oscar P Kuipers
Journal:  ACS Synth Biol       Date:  2020-05-22       Impact factor: 5.110

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