Defective microglial development in the hippocampus of Cx3cr1 deficient mice.

Microglial cells participate in brain development and influence neuronal loss and synaptic maturation. Fractalkine is an important neuronal chemokine whose expression increases during development and that can influence microglia function via the fractalkine receptor, CX3CR1. Mice lacking Cx3cr1 show a variety of neuronal defects thought to be the result of deficient microglia function. Activation of CX3CR1 is important for the proper migration of microglia to sites of injury and into the brain during development. However, little is known about how fractalkine modulates microglial properties during development. Here we examined microglial morphology, response to ATP, and K(+) current properties in acute brain slices from Cx3cr1 knockout mice across postnatal hippocampal development. We found that fractalkine signaling is necessary for the development of several morphological and physiological features of microglia. Specifically, we found that the occurrence of an outward rectifying K(+) current, typical of activated microglia, that peaked during the second and third postnatal week, was reduced in Cx3cr1 knockout mice. Fractalkine signaling also influenced microglial morphology and ability to extend processes in response to ATP following its focal application to the slice. Our results reveal the developmental profile of several morphological and physiological properties of microglia and demonstrate that these processes are modulated by fractalkine signaling.

Introduction

Microglia, traditionally known as resident immune cells in the central nervous system (CNS), play essential roles in brain circuit maturation during development, participating in the precise refinement of synaptic connections (Tremblay et al., 2010; Paolicelli et al., 2011; Schafer et al., 2012; Zhan et al., 2014). Microglial cells derive from myeloid lineage and colonize the immature brain during development, progressively acquiring a ramified morphology, commonly associated to surveying activity (Prinz and Mildner, 2011; Walker et al., 2014). Ramified microglia lie very close to each other and have highly motile filopodia-like protrusions of variable shape, defining rarely overlapping niches of competency (Raivich, 2005). Microglial processes continuously sample the extracellular space and contact pre- and post-synaptic elements (Davalos et al., 2005; Nimmerjahn et al., 2005; Wake et al., 2009; Tremblay et al., 2010). Among the functional consequences of this active and continuous surveillance of the developing brain appear to be the shaping neuronal circuits by phagocytosis (Paolicelli et al., 2011) and favoring synaptic maturation (Hoshiko et al., 2012). In damaged brain, microglial processes rapidly rearrange toward the site of injury (Nimmerjahn et al., 2005; Lee et al., 2008). Among soluble factors activating microglial cells, ATP regulates microglial processes extention and ramification in both physiological and pathological conditions (Davalos et al., 2005; Inoue et al., 2007). To reach the site of activating stimuli, microglia retract their cellular processes and rearrange them in a directional manner toward the lesion. In addition, a marked change in ionic channel expression has been observed (Boucsein et al., 2000). Indeed, in acute brain slices non-activated microglia frequently display a small linear conductance, while following nerve lesion (Boucsein et al., 2000) or status epilepticus (Avignone et al., 2008) they transiently express inward and outward rectifier potassium (K+) currents (Menteyne et al., 2009; Kettenmann et al., 2011). Ion channels have been involved in many microglial functional properties (Eder, 2005), such as cell volume regulation (Schlichter et al., 1996; Eder et al., 1998), proliferation (Kotecha and Schlichter, 1999), migration (Rappert et al., 2002; Schilling et al., 2004) and cell process extension and retraction (Eder et al., 1998). However, microglia activation is no longer considered an all or none event, but rather a sequence of progressive stages (Ponomarev et al., 2007; Olah et al., 2012; Crain et al., 2013) depending on the balance between pro-inflammatory and anti-inflammatory signals in the surrounding environment (Biber et al., 2007; Lively and Schlichter, 2013).

Chemokines are key molecules in neuron-microglia communication in the developing and mature brain under both physiological and pathological conditions (de Jong et al., 2005). Fractalkine is an important neuron-microglia chemokine signal. In the CNS, fractalkine is expressed by neurons, especially in forebrain structures (Tarozzo et al., 2003), while its receptor, CX3CR1, is expressed uniquely by microglia (Harrison et al., 1998; Jung et al., 2000; Cardona et al., 2006; Mizutani et al., 2012). Recent studies showed that fractalkine-mediated microglia-neuron signaling modulates numerous physiological processes across the lifespan, including the maturation of synaptic connections (Paolicelli et al., 2011; Zhan et al., 2014), neuronal survival (Limatola et al., 2005; Lauro et al., 2008), and synaptic transmission and plasticity (Bertollini et al., 2006; Ragozzino et al., 2006; Piccinin et al., 2010; Maggi et al., 2011; Hoshiko et al., 2012). Mice lacking fractalkine signaling display deficits in hippocampal-dependent learning and memory (Rogers et al., 2011; Zhan et al., 2014) and in microglial properties in barrel cortex (Arnoux et al., 2013). Moreover, reduced microglia colonization during development has been described in hippocampus (Paolicelli et al., 2011) and somatosensory cortex (Hoshiko et al., 2012) in these mice.

In order to better understand the role of fractalkine signaling in microglia physiology and its possible impact on brain development, we studied several functional properties of microglia in acute brain slices from Cx3cr1 knockout mice across the first postnatal weeks (PNWs). We report that the functional properties of microglia undergo dynamic changes during development and that these changes are absent or delayed in mice lacking fractalkine signaling. These data reveal the highly dynamic nature of microglial maturation during brain development and further highlight the importance of fractalkine signaling in this process.

Materials and Methods

Animals and Ethical Approval

For acute slice preparation, Cx3cr1GFP/+ and Cx3cr1GFP/GFP mice were used (Jung et al., 2000). For microglia morphometric analysis in perfused brains, Cx3cr1GFP/+ and Cx3cr1GFP/KO littermates were produced by intercrossing Cx3cr1GFP/GFP with Cx3cr1KO/+ breeders (Haskell et al., 2001). This breeding strategy was required for the progeny to have a single GFP allele, regardless the Cx3cr1 genotype. Such approach was necessary for imaging microglia with similar fluorescent intensity thresholds. Procedures using laboratory animals were in accordance with the international guidelines on the ethical use of animals from the European Communities Council Directive of November 24, 1986 (86/609/EEC). All efforts were made to minimize animal suffering and to reduce the number of animals used, in accordance with the European Communities Council Directive of September 20, 2010 (2010/63/UE).

Slice Preparation

Acute hippocampal slices were prepared from Cx3cr1 and Cx3cr1 mice (Jung et al., 2000) in the first six PNWs. Animals were decapitated under halothane anesthesia, and whole brains were rapidly immersed for 10 min in chilled artificial cerebrospinal fluid (ACSF) containing (in mM): NaCl 125, KCl 2.3, CaCl2 2, MgCl2 1, NaHPO4 1, NaHCO3 26, and glucose 10 (Sigma Aldrich). The ACSF was continuously oxygenated with 95% O2, 5% CO2 to maintain physiological pH. Transverse 250 μm hippocampal slices were cut at 4°C with a vibratome (DSK, Kyoto, Japan), placed in a chamber containing oxygenated ACSF and allowed to recover for at least 1 h at room temperature. All recordings were performed at room temperature on slices submerged in ACSF and perfused (1 ml/min) with the same solution in the recording chamber under the microscope. For microglia morphometric analysis from perfused brains, on post-natal day 8 (P8), pups were anesthetized intraperitoneally with Avertin (Sigma-Aldrich, St Louis, MO, USA) and perfused transcardially with 4% paraformaldehyde. Brains were postfixed overnight at 4°C, and sliced afterward on a vibratome (100 μm thick sections; Leica Microsystems, Wetzlar, Germany). Upon DAPI staining, slices were mounted on glass slides and kept for images acquisition.

Time-Lapse Imaging in Acute Hippocampal Slices

Time-lapse fluorescence determinations were acquired at room temperature (24–25°C) using a customized digital imaging microscope. Excitation of GFP was achieved using a 1-nm-bandwidth polychromatic light selector (Till Polychrome V), equipped with a 150 W xenon lamp (Till Photonics, Germany). Fluorescence was visualized using an upright microscope (Axioskope) equipped with a 40x water-immersion objective (Achroplan CarlZeiss, USA) and a digital 12 bit CCD camera system (SensiCam, PCO AG, Germany). All the peripheral hardware control, image acquisition and image processing were achieved using customized software Till Vision v. 4.0 (Till Photonics. A glass pipette containing adenosine 5′-triphosphate magnesium salt (ATP, 3 mM; Sigma Aldrich) was placed in the stratum radiatum in the center of the recording field. Mg-ATP was pressure applied to the slices (100 ms; 5 psi) with a Picospritzer III (Parker Instrumentation). Changes in GFP fluorescence distribution were monitored by acquiring a fluorescent image every 10 s for 50 min. To quantify the speed of microglial processes rearrangement toward the pipette tip, we measured the increase of GFP fluorescence in a circular area centered on the pipette tip (10 μm radius). At each time point the fluorescence increase in the area was calculated as ΔF = F-F0, and then divided for F0 (ΔF/F0, where F0 is the average fluorescence before ATP puff), to normalize the difference in basal GFP fluorescence in slices from the two genotypes. Slices were used from 2 to 7 h after cutting.

Tracking Analysis of Single Microglial Process

All images were processed using ImageJ software (Schindelin et al., 2012; Schneider et al., 2012). Images stacks were exported as .avi files to enable manual cell processes tracking on the ImageJ “Manual Tracking” plug-in (http://imagej.nih.gov/ij/plugins/track/track.html). To obtain quantitative distributions of tracks parameters, data were analyzed with ImageJ and Origin 7 (OriginLab Co.) software. Stacks were first background subtracted to optimize contrast. To obtain x–y coordinates of single processes, track positions were transferred into a new coordinate system, in which the ATP-containing pipette tip was set as origin (x = 0, y = 0). For each moving process (i), with position vector Ri(t), the change in position from one frame to the next , and the instantaneous velocity were given by ΔRi(t) = Ri(t+Δt) – Ri(t), and vi(t) = ΔRi(t)/Δt respectively, where Δt is the elapsed time among the two frames. The mean velocity of each process was calculated as = dx/dt, expressed in μm/min, defining dx as the mean accumulated distance of each process i sampled within the time interval dt. The position of each process was converted in polar coordinates from Cartesian coordinates. The radial distance r in every pair of successive images was calculated by measuring the Euclidean distance of individual tracks considering r(t)2 = (x(t))2 + (y(t))2. The mean velocity vector was then expressed as in polar coordinates oriented to the center, corresponding to the ATP-containing pipette tip. Displacement is defined as the vector length of the final coordinates from the origin. Directionality is an index of the straightness of the processes trajectory. Index values close to one indicates a straight migration trajectory toward the ATP-containing pipette; low values refer to process following a meandering path. Migration directionality was calculated as the ratio of the vector displacement of each process to their accumulated distance (process track) with the help of ImageJ software as previously described (Wu et al., 2012).

Whole Cell Patch Clamp Recordings

Visually identified GFP-expressing microglial cells were patched in whole-cell configuration in the CA1 stratum radiatum. Micropipettes (4–5 MΩ) were usually filled with a solution containing the following composition (in mM): KCl 135, BAPTA 5, MgCl2 2, HEPES 10, and Mg-ATP 2 (pH 7.3 adjusted with KOH, osmolarity 290 mOsm; Sigma Aldrich). Voltage-clamp recordings were performed using an Axopatch 200A amplifier (Molecular Devices). Currents were filtered at 2 kHz, digitized (10 kHz) and collected using Clampex 10 (Molecular Devices); the analysis was performed off-line using Clampfit 10 (Molecular Devices). Slicing procedure might activate microglial cells especially near the surface of the slice, whereby recordings were performed on deep cells. Moreover, experiments were performed from 1 to 7 h after slicing. The current/voltage (I/V) relationship of each cell was determined applying voltage steps from -170 to +70 mV (ΔV = 10 mV) for 50 ms holding the cell at -70 mV between steps. Resting membrane potential and membrane capacitance were measured at start of recording. Membrane capacitance was estimated as the total charge (i.e., the current integral, Qstep) mobilized in each cell by a 10 mV depolarizing step (Vstep): Qstep/Vstep (Supplementary Material). Outward and inward rectifier K+ current amplitude were evaluated after subtraction of the leak current by a linear fit of the I/V curve between -100 and -50 mV. Cells were considered as expressing the outward rectifier K+ current when the I/V relationship showed a rectification above -30 mV and the amplitude measured at 0 mV was at least 10 pA, after leak subtraction; similarly cells showing a small inward rectification below -100 mV were classified as expressing the inward rectifier K+ current when subtracted current amplitude was at least 5 pA at -150 mV. Current densities, reported in Table , were obtained by normalization of current amplitude to cell capacitance. 4-aminopyridine (2 mM, Sigma Aldrich) was used as blocker of outward rectifier K+ current.

Morphological Analysis of Microglial Cells

In slices from perfused brains, endogenous GFP signal was acquired in the hippocampus CA1 stratum radiatum, for a total of 52 serial optical sections (42 μm thickness in the z-axis, 129 × 129 μm in xy-axis). Representative images of those fields were obtained as a z-projection based on the maximal intensity signal, using ImageJ software. Within each acquired stack, all the cells that appear entire were subjected to three-dimensional reconstruction.

Three dimensional reconstruction of recorded microglial cells was achieved by injecting biocytin (0.4% dissolved in the internal solution) throughout the recording electrode for at least 10 min. Slices were removed from recording chamber and fixed with paraformaldehyde 4% for 20 min at room temperature and stored at 4°C. After Triton X100 permeabilization, sections were stained with primary antibody at 4°C (anti-GFP antibody, Aves Labs, Inc., Portland, Oregon; 1:800), then incubated with a secondary antibody conjugated to fluorescein (Aves Lab. 1:800), and with streptavidin conjugated to fluorophore Alexa594 (Abcam, 1:800).

Confocal microscopy analysis was performed with a TCS-SP5 (Leica) Laser Scanning System, at 40x magnification. Acquisition files were then processed with ImageJ software for two-dimensional analysis. Three dimensional reconstructions were generated with Imaris software (Bitplane, Zurich, Switzerland) and morphometric analysis of each reconstructed cell, both in acute slices and in perfused brain sections, was performed after surface and volume rendering.

Isolation of Microglial GFP Positive Cells from Hippocampus

Two weeks old Cx3cr1 and Cx3cr1 mice were anesthetized and decapitated. Brains were removed, and isolated hippocampi were cut into small pieces. Single-cell suspension was achieved by mechanical dissociation and the suspension was applied to a 70 μm cell strainer. Cells were sorted based on GFP expression using a BD FACSAriaIII (BD Biosciences) equipped with a 488 nm laser and FACSDiva software 6.1.3 (BD Biosciences). Briefly, cells were first gated based on forward and side scatter area plot (FSC-A and SSC-A), and then detected in the green fluorescence channel for GFP expression. Following this gate strategy, GFP positive cells sorted were enriched to >98%, used for total RNA isolation with Single Cell RNA Purification Kit (Norgen Biotek Corp., Thorold, ON, Canada), and processed for real-time PCR. The quality and yield of RNAs were verified using the Ultraspec 2000 UV/Visible (Pharmacia Biotech).

Real-Time PCR

Reverse transcription reaction was performed in a thermocycler (MJ Mini Personal Thermal Cycler; Biorad, Milano, Italy) using IScript TM Reverse Transcription Supermix (Biorad) according to the manufacturer’s protocol, under the following conditions: incubation at 25°C for 5 min, reverse transcription at 42°C for 30 min, inactivation at 85°C for 5 min. Real-time PCR (RT-PCR) was carried out in a I-Cycler IQ Multicolor RT-PCR Detection System (Biorad) using SsoFast EvaGreen Supermix (Biorad) according to the manufacturer’s instructions. The RT-PCR protocol consisted of 40 cycles of denaturation at 95°C for 30 s and annealing/extension at 60°C for 30 s. For quantification analysis the comparative Threshold Cycle (Ct) method was used. The Ct values from each gene were normalized to the Ct value of GAPDH in the same RNA samples. Relative quantification was performed using the 2-δδCt method (Schmittgen and Livak, 2008) and expressed as fold changes in arbitrary values. The following pairs of primers were used: p2y12: 5′-CCTGTCGTCAGAGACTACAAG-3′ (F); 5′-GGATTTACTGCGGATCTGAAAG-3′ (R); p2Y6 5′-ATCAGCTTCCTGCCTTTCC-3′ (F); 5′-CTGTGAGCCTCTGTAAGAGAGATCG-3′ (R); cd86: 5′-AGAACTTACGGAAGCACCCA-3′ (F); 5′-GGCAGATATGCAGTCCCATT-3′ (R); il-15: 5′-CATCCATCTCGTGCTACTTGTGTT-3′ (F); 5′-CATCTATCCAGTTGGCCTCTGTTT-3′ (R); tnf-α : 5′-GTGGAACTGGCAGAAGAG-3′ (F); 5′-CCATAGAACTGATGAGAGG-3′ (R); arg-1: 5′-CTCCAAGCCAAAGTCCTTAGAG-3′ (F); 5′-AGGAGCTGTCATTAGGGACATC-3′ (R); ym-1 5′-CAGGTCTGGCAATTCTTCTGAA-3′ (F); 5′-GTCTTGCTCATGTGTGTAAGTGA-3′ (R); il-1β: 5′-GCAACTGTTCCTGAACTCAACT-3′ (F); 5′-ATCTTTTGGGGTCCGTCAACT-3′ (R); cd206: 5′-CAAGGAAGGTTGGCATTTGT-3′ (F); 5′-CCTTTCAGTCCTTTGCAAGC-3′ (R); fizz-1: 5′-CCAATCCAGCTAACTATCCCTCC-3′ (F); 5′-ACCCAGTAGCAGTCATCCCA-3′ (R); gapdh 5′-TCGTCCCGTAGACAAAATGG-3′ (F); 5′-TTGAGGTCAATGAAGGGGTC-3′ (R).

Statistical Analysis

Data, analyzed offline, are presented as mean ± SEM. Statistical analyses were performed using Imaris software for quantitative morphometric analysis; Origin 7 and SigmaPlot 11 (Systat Software Inc., San Jose, CA, USA) software were used for statistical analysis of electrophysiological and imaging data. Paired and unpaired t-test and one-way ANOVA were used for parametrical data, as indicated; multiple comparison procedures were performed with Holm-Sidak method. We constructed I/V plots, cumulative distribution plots, and fitted data points by linear or non-linear regression analysis using Origin 7 software. Statistical significance for cumulative distributions was assessed with Kolmogorov-Smirnov test. For statistical analysis of microglial surface areas in fixed brains, we arbitrarily subdivided the cells of each genotype in two classes as smaller or larger respect to the median of each distribution. For statistical analysis of current occurrence in different PNWs and genotypes, statistical difference of proportions was obtained with z-test (SigmaPlot 11). For multiple comparisons, multiplicity-adjusted p values are indicated on the respective figures when appropriate; otherwise the p values were indicated by ∗p < 0.05, ∗∗p < 0.01, and ∗∗∗p < 0.001.

Results

Lack of Fractalkine Signaling Impairs Microglial Expression of Voltage-Dependent K+ Currents in the Second Postnatal Week

We analyzed the electrophysiological properties of microglial cells by whole-cell recordings in CA1 stratum radiatum of acute hippocampal slices from Cx3cr1 and Cx3cr1 mice, during PNW 2. Microglial cells recorded from CX3CR1+/GFP slices, displayed, in different proportion, both outward and inward voltage-dependent K+ currents (Figures ). The outward K+ current (IK, Figures , right; 1B), recorded in 46/88 (52%) cells, was blocked by 4-aminopyridine (2 mM; n = 3, data not shown). The inward rectifier K+ current (IKir, Figures , right; 1B) was present in 43% of microglial cells. As shown in Figure (purple bars), representing the electrophysiological profile of CX3CR1+/GFP microglia, about one fourth of cells displayed both currents (26%, Figure , right), while a similar proportion was silent (30%, Figure , left). Microglial cells lacking fractalkine signaling showed a remarkably different electrophysiological profile, with lower frequency of currents expression: IK (36%), IKir (23%), both currents (5%), silent (46%; Figure , orange bars, p < 0.05, Chi-square test). However, both IK and IKir were detected with similar current densities in the two genotypes (Table ).

FIGURE 1

Expression of voltage-activated K Current traces of representative microglial cells from CX3CR1+/GFP acute slices in response to voltage steps stimulation (steps from -170 to +70 mV, only one out of two steps are shown; holding potential -70 mV). Left: typical current profile of silent microglia. Right: current traces of a microglial cell expressing both IK and IKir. Note that IK expressing cells show a significantly higher membrane capacitance compared to IK negative cells (IK expressing cells 20.0 ± 0.7 pF, n = 46; IK negative cells 16.3 ± 0.7 pF, n = 42; p = 0.001, t-test). (B) Corresponding current/voltage relationship of the two cells as in A after leak current subtraction. (C) Proportion of microglial cells displaying IK, IKir, both currents (IK + IKir) or none of them (Sil) in Cx3cr1+/GFP (purple bars) and Cx3cr1GFP/GFP (orange bars) mice. (∗p < 0.05, Chi-square test).

These results suggest that in the developing hippocampus, a relevant proportion of microglial cells displays a pattern of voltage-dependent K+ currents (IK and IKir) resembling that of activated microglia; the occurrence of this phenotype is reduced in mice lacking fractalkine signaling.

Reduced Ramification of Microglia in Cx3cr1GFP/GFP Mice

To characterize microglial morphology and disclose possible differences between the two genotypes, a morphometric analysis was performed in fixed mouse brains of Cx3cr1 and Cx3cr1 littermates at P8, both bearing a single GFP copy (Figure ). The tridimensional reconstruction of microglial cells did not reveal significant differences in cell surface area and volume between the two genotypes (mean surface area: CX3CR1GFP/+ 1271 ± 105 μm2, n = 68; CX3CR1GFP/KO 1168 ± 69 μm2, n = 86; p = 0.4, t-test; mean volume: CX3CR1GFP/+ 1026 ± 93 μm3, n = 68; CX3CR1GFP/KO 878 ± 54 μm3 n = 86; p = 0.2, t-test). However, a more detailed analysis on the distributions of microglial surface areas showed that a small population of CX3CR1GFP/+ cells was characterized by a very large surface area and that this population was absent in CX3CR1GFP/KO brains (Figure ). The subdivision of cells in each genotype in two classes, as smaller (small) or larger (large) respect to the median of each distribution, revealed a significant difference between large cells, with surface area significantly smaller in Cx3cr1 mice (Figure ; p < 0.01, two-way ANOVA, Holm-Sidak) No difference was observed in the small cell group.

Reduced ramification of CX3CR1 Representative confocal z-stack projections showing microglial cells in CA1 stratum radiatum from P8 Cx3cr1 (left) and Cx3cr1 (right) mice (blu: DAPI; bar 30 mm). (B) Quantitative morphometric analysis of CX3CR1GFP/+ and CX3CR1GFP/KO microglial cells; notice that the difference in surface area is limited to large cells (mean surface area in large cells (green boxes): CX3CR1GFP/+ 1924 ± 133 μm2, n = 34; CX3CR1GFP/KO 1705 ± 64 μm2, n = 43; ∗∗ referred to green boxes, p < 0.01, two way ANOVA, Holm-Sidak; mean surface area in small cells (black boxes): CX3CR1GFP/+ 618 ± 32 μm2, n = 34; CX3CR1GFP/KO 630 ± 38 μm2, n = 43, p = 0.9, two way ANOVA, Holm-Sidak). (C) 3D reconstruction, by Imaris software, of representative biocytin-loaded microglial cells in CA1 stratum radiatum from CX3CR1+/GFP (left) and CX3CR1GFP/GFP (right) slices, showing reduced processes extension in CX3CR1GFP/GFP cells. (D) Quantitative morphometric analysis of cell surface area (left) and volume (right) of CX3CR1+/GFP (+/GFP, purple) and CX3CR1GFP/GFP (GFP/GFP, orange) biocytin-loaded microglia. Note that CX3CR1GFP/GFP cells are significantly less extended (mean surface area: CX3CR1+/GFP 2975 ± 398 μm2, n = 17; CX3CR1GFP/GFP 1302 ± 146 μm2, n = 15; ∗∗∗p < 0.0005, t-test; mean volume: CX3CR1+/GFP 2899 ± 391 μm3, n = 17; CX3CR1GFP/GFP 1160 ± 155 μm3 n = 15; ∗∗∗p < 0.0005, t-test). (E) Area correlation between genotypes (CX3CR1+/GFP, purple bars; CX3CR1GFP/GFP, orange bars) in cells expressing IK (IK +) and cells not expressing IK (IK -). Note that the surface area increase is restricted to CX3CR1+/GFP IK - cells (∗p < 0.05 vs. IK +; ##p < 0.01 vs. CX3CR1GFP/GFP, t-test).

Further investigation was carried out on microglial cells from acute hippocampal slices in PNW 2. A subset of microglial cells was filled with biocytin through the recording pipette, allowing high resolution 3D reconstruction and the correlation between electrophysiological profile and morphology. As shown in the representative images in Figure , in slices, CX3CR1GFP/GFP cells (right) displayed strikingly reduced processes extension compared to CX3CR1+/GFP cells (left). Quantitative morphometric analysis confirmed that surface area and volume of CX3CR1GFP/GFP microglial cells (n = 15) were significantly smaller with respect to those of CX3CR1+/GFP microglia (n = 17; p < 0.0005, t-test; Figure ).

Moreover, in CX3CR1+/GFP microglial cells, processes extension was negatively correlated with IK expression (Figure , purple bars). Indeed, IK positive cells (7/17) showed less ramified morphology and smaller surface area, compared to IK negative cells (n = 10/17; p < 0.05, t-test). In addition, IK positive cells had a significant higher membrane capacitance compared to that of IK negative cells (IK positive cells: 21.7 ± 1.4 pF, n = 7; IK negative cells: 16.4 ± 1.4 pF, n = 10, p < 0.05, t-test).

These data point to a subdivision of PNW 2 microglial cells in two functional groups: one resembling active microglia, characterized by retracted phenotype and IK expression and another surveying microglia, IK negative and ramified. This correlation was not observed in CX3CR1GFP/GFP microglial cells (Figure , orange bars). In fact, in brain slices from Cx3cr1 mice, both IK positive (n = 8) and negative (n = 7) cells displayed poorly ramified morphology. Consistently, the difference in cell surface area between the two genotypes was restricted to IK negative cells (p < 0.01, t-test; Figure ), suggesting that in Cx3cr1 mice surveying microglia are less ramified and pointing to a functional monitoring defect. None of the two genotypes showed a correlation between IKir expression and the morphological parameters of surface area and volume (data not shown).

To determine whether the above reported phenotypical differences could rely on cellular polarization, we compared in Cx3cr1 and Cx3cr1 mice the microglial expression profile of specific genes related to M1/M2 activation states. RT-PCR was performed on mRNAs extracted from hippocampal GFP positive cells from the two genotypes. As reported in Table , no statistically significant differences were observed for either M1 (cd86, il-1β, il-15, tnf-α) or M2 (arg-1, cd206, fizz, ym-1) genes, indicating that the phenotypical changes associated with the lack of fractalkine signaling are not associated with polarization toward “classical” M1 or “alternative” M2 activation states.

Altogether, these data indicate that CX3CR1GFP/GFP microglia show functional and morphological differences respect to CX3CR1+/GFP microglia, which are not relying on a different M1/M2 microglial polarization in the two genotypes.

ATP-Induced Microglial Processes Migration Is Impaired in CX3cr1 Knockout Mice

Using time-lapse imaging, we characterized the extension of microglial processes toward the focal application of ATP in hippocampal slices. To quantify the directional movement in the two genotypes, we monitored the fluorescence increase in concentric areas around the ATP-containing pipette tip before and after a short ATP puff (3 mM, 100 ms). As shown in Figure , the increase in fluorescence measured around the pipette (10 μm radius) was reduced in Cx3cr1 mice (orange squares, n = 18 fields/5 mice) compared to Cx3cr1 mice (purple circles, n = 18 fields/10 mice; p < 0.05, unpaired t-test).

ATP-induced microglia processes rearrangement in CX3CR1 Time course (left) of fluorescence ratio (ΔF/F0) measured in a circle (10 μm radius) centered on the tip of the ATP puff pipette (arrow), in slices from Cx3cr1+/GFP (purple symbols and box, n = 18 slices/10 mice) or Cx3cr1GFP/GFP mice (orange symbols and box, n = 18/5) at PNW 2 (scale bar 20 μm); t = 0 corresponds to ATP application (Mg-ATP 3 mM, 5 psi, 100 ms). Note the fluorescence increase in the area around the pipette tip only in CX3CR1+/GFP slices (∗p < 0.05, unpaired t-test). (B) Representative tracking of single processes movement in CX3CR1+/GFP (purple box) and CX3CR1GFP/GFP (orange box) fields. Graph origin corresponds to the pipette tip (x = 0, y = 0). Color traces correspond to single processes. (C) Bar chart representing the number of traceable processes in CX3CR1+/GFP (purple bars, n = 8 fields) and CX3CR1GFP/GFP (orange bar, n = 8 fields) slices at the beginning of the experiments (t0) and 45 min after ATP application (t45). Note that in CX3CR1+/GFP slices the number of detectable processes at t0 is significantly higher than in CX3CR1GFP/GFP slices (∗∗p < 0.01, t-test); after ATP application, processes number increases in both genotypes (#p < 0.05 respect to CX3CR1+/GFP at t0; §p < 0.01 respect to CX3CR1GFP/GFP at t0, t-test).

To determine whether the impairment in process extension was due to a reduction in expression of ATP receptors, p2y12 and p2y6 mRNAs levels were evaluated by RT-PCR in hippocampal microglial cells. As reported in Table , no expression differences were observed for either p2y12 or p2y6 transcripts, suggesting that ATP sensing was not altered in developing hippocampal microglial cells lacking Cx3cr1.

To understand the basis of the observed difference in processes extension between the two genotypes, we performed a tracking analysis of single microglial processes (Figure ; movies 1 and 2 in Supplementary Material). At the start of fluorescence monitoring (t0), the number of detected processes was significantly higher in CX3CR1+/GFP than in CX3CR1GFP/GFP slices (p < 0.01, t-test; Figure ). Moreover, at t0 the process positions in CX3CR1GFP/GFP slices (orange symbols, Figure ) were more distant from the ATP-containing pipette, compared to CX3CR1+/GFP (purple, p < 0.05, Kolmogorov-Smirnov test). The observed differences may reflect the reduced ramification of CX3CR1GFP/GFP microglia, as well as their lower cell density (Paolicelli et al., 2011). Besides, in both genotypes the number of traced processes increased during the experiments, which was significantly higher 45 min after ATP puff (t45; Figure ). We noticed that the mean velocity of processes elongation was similar in the two genotypes (CX3CR1+/GFP 2.39 ± 0.05 μm/min, n = 210 processes/8 fields/4 mice; CX3CR1GFP/GFP 2.48 ± 0.08, n = 161/8/4; p = 0.36; not shown). Nevertheless, the distribution of microglial processes positions was remarkably different between the two genotypes also after ATP-induced extension, as CX3CR1+/GFP processes were significantly closer to the pipette tip at t45 (Figure ; p < 0.0001, Kolmogorov-Smirnov test). This was likely due to the lower directionality shown by microglial processes in their elongation. As shown in Figure , CX3CR1GFP/GFP processes displayed lower displacement and directionality toward ATP source.

Tracking analysis of single processes in CX3CR1 Left, plot of spatial x-y coordinates respect to the ATP pipette tip of microglial processes in CX3CR1+/GFP (purple symbols, n = 133 processes/8 fields) and CX3CR1GFP/GFP hippocampal slices (orange symbols, n = 89/8) at start of recordings (t0). Right, cumulative distributions of radial distances of microglial processes from the pipette tip in CX3CR1+/GFP (purple) or CX3CR1GFP/GFP (orange) slices, at t0. Note that CX3CR1GFP/GFP processes are significantly more distant than CX3CR1+/GFP ones (∗p < 0.05, Kolmogorov-Smirnov test). (B) Left, plot of spatial x-y coordinates of CX3CR1+/GFP (purple symbols, n = 209/8) and CX3CR1GFP/GFP (orange symbols, n = 161/8) microglial processes 45 min after ATP application (t45). Right, cumulative distributions of radial distances of microglial processes in CX3CR1+/GFP (purple) or CX3CR1GFP/GFP (orange) slices, at t45. Note that at t45 the majority of CX3CR1GFP/GFP processes do not reach the ATP pipette (∗∗p < 0.0001, Kolmogorov-Smirnov test). (C) Box charts of displacement (left) and directionality (right) of CX3CR1+/GFP (purple) and CX3CR1GFP/GFP (orange) microglial processes. In slices from Cx3cr1+/GFP mice displacement and directionality are significantly higher than in those from Cx3cr1GFP/GFP mice (∗∗∗p < 0.0001, t-test), (D) Correlation plot showing mean instantaneous velocities vs. radial distance of CX3CR1+/GFP (purple) and CX3CR1GFP/GFP (orange) microglial processes. The velocity of CX3CR1+/GFP processes increase significantly 7 mm far from the ATP pipette tip (∗p < 0.001, Kruskal-Wallis One Way ANOVA on Ranks, and p < 0.05 multiple comparison Dunn’s method versus 15, 25, and 35 μm radial distance). Note that in the proximity of the ATP pipette, the velocity of CX3CR1GFP/GFP processes is significantly slower than that of CX3CR1+/GFP processes (#p < 0.01 t-test).

In addition, the correlation between instantaneous velocity and position of single process (measured as radial distance from the ATP source), showed a non-linear profile of extension velocity in CX3CR1+/GFP cells (Figure , left). The speed of single process movement increased when processes of CX3CR1+/GFP microglia were in the proximity of the ATP stimulus (Figure ). This rise in instantaneous velocity as the processes approach the site of ATP application was absent in CX3CR1GFP/GFP slices (Figure ), contributing to the reduced efficacy of ATP-directed processes rearrangement in the absence of fractalkine signaling.

Absence of Fractalkine Signaling Affects Developmental Profile of Microglia Functional Properties in the Hippocampus

In order to determine whether the physiological deficits we identified in Cx3cr1 knockout mice were specific to the early postnatal period, we analyzed the morphological and functional properties of hippocampal microglia at a later developmental stage (PNW 6). Surface area quantification of biocytin-injected microglia, revealed that CX3CR1+/GFP microglia at PNW 6 had significantly greater process extensions relative to PNW 2 (mean surface area = 4662 ± 404 μm2, n = 15, p < 0.01; unpaired t-test; Figure ). Conversely, membrane surface area of CX3CR1GFP/GFP microglia at PNW 6 was not greater than at PNW 2 (mean surface area = 1816 ± 286 μm2, n = 16, p = 0.13 PNW 6 vs. PNW 2; unpaired t-test) and was significantly smaller when compared to control mice at PNW 6 (p < 0.01, Cx3cr1 vs. Cx3cr1 unpaired t-test). Moreover, CX3CR1GFP/GFP microglia showed significantly lower capacitance than CX3CR1+/GFP cells (23.7 ± 0.7 pF, n = 63; 28.3 ± 0.7 pF, n = 63; p < 0.001, unpaired t-test; PNWs 5–6; Figure ).

We also analyzed the expression of voltage dependent K+ currents and ATP-induced process extension during PNWs 1–6. Patch clamp recordings of microglia in CX3CR1+/GFP slices showed that the occurrence of IK was developmentally regulated, transiently increasing in PNWs 2 and 3 (p < 0.05 respect to PNW 1, z-test; Figure , purple). Conversely, in the absence of fractalkine signaling, no developmental increase in IK expression was observed with about one third of cells expressing IK (Figure , orange). Consistent with this observation the proportion of cells expressing IK at PNWs 2 and 3 in CX3CR1+/GFP slices was significantly higher than in CX3CR1GFP/GFP slices (p < 0.05, Figure ).

Developmentally regulated changes in microglial electrophysiological properties and processes rearrangement in CX3CR1 Time course displaying the occurrence of microglial cells expressing IK (IK + cells) during PNWs 1–6. IK expression transiently increases only in CX3CR1+/GFP microglia (purple symbols) during PNWs 2–3 (*p < 0.05 respect to PNW 1; #p < 0.05 between the two genotypes). (B) Time course displaying the occurrence of microglial cells expressing IKir (IKir + cells). IKir expression transiently decreases only in CX3Cr1GFP/GFP microglia (orange symbols) during PNW 2 (§ p < 0.05; * and # as as in panel A). (C) Bar chart of mean total fluorescence ratio (ΔF/ΔF0) measured during ATP induced processes rearrangement in slices from CX3Cr1+/GFP (purple bars) or CX3Cr1GFP/GFP mice (orange bars) during PNWs 1-5. Number of recorded fields is reported on the top of each bar. Note that the peak of microglial ability to respond to ATP stimulus is delayed in CX3Cr1GFP/GFP mice (**p < 0.01).

We then tested whether the proportion of IKir expressing microglia followed a similar temporal pattern. In CX3CR1+/GFP slices, the proportion of microglia displaying IKir showed a developmental increase to about 90% at PNW 6 (p < 0.001 vs. PNWs 1, 2, and 3, z-test, Figure , purple). Conversely, in CX3CR1GFP/GFP slices this developmental increase of IKir was not observed, although a transient reduction was found at PNW 2 (Figure , orange, p < 0.05, vs. PNW 1, z-test). Consistently the proportion of IKir expressing cells in CX3CR1GFP/GFP slices was significantly lower when compared to CX3CR1+/GFP slices at PNWs 5 and 6 (p < 0.01, Figure ). These results show that fractalkine signaling is involved in modulating the profile of microglial voltage-dependent potassium currents during postnatal development.

Finally, we characterized changes in ATP-directed process extension across developmental time points (PNWs 1–5). Quantitative time-lapse imaging analysis revealed that in Cx3cr1 mice the speed of extension peaked at PNW 2 (p < 0.01, vs PNW 1 ANOVA) with a non-significant tendency to decrease in the following weeks (Figure , purple bars). In CX3CR1GFP/GFP slices, a later increase of extension speed was observed, with a peak at PNW 4 (p < 0.01, vs. PNW 1 ANOVA; Figure , orange bars), pointing to a delay in microglial maturation. These results indicate that fractalkine signaling plays a critical role in the dynamics of maturation of microglia.

Discussion

We report here that mice lacking Cx3cr1 are defective in developmentally regulated changes of microglial properties, highlighting the role of fractalkine signaling in neuron-microglia interaction during brain development. Our data show that the lack of CX3CR1 strongly affects both microglial morphology and functional properties. Specifically, microglia in Cx3cr1 mice were characterized by a less ramified morphology, by the lack of developmental regulation of K+ currents and, most remarkably, by defective tissue monitoring, as demonstrated by a reduction in ATP-directed rearrangement.

Our 3D confocal imaging reconstructions from hippocampal slices revealed reduced microglial branching in CX3CR1GFP/GFP slices (Figure ), which was partially confirmed by analysis of perfused brains. CX3CR1 signaling has been shown to influence microglial function under both normal and pathological conditions (Limatola and Ransohoff, 2014; Paolicelli et al., 2014). For example, a transient reduction of microglial density during hippocampal development has been reported in Cx3cr1 knockout mice (Paolicelli et al., 2011). However, previous studies examining microglia ramification did not evidentiate morphological differences (Liang et al., 2009; Hoshiko et al., 2012), suggesting that they may be the result of the acute hippocampal slices preparation and/or recording conditions, with ATP containing whole cell pipette, used in our studies. The observed difference may, thus, depend on higher susceptibility to insults of Cx3cr1 knockout mice. Indeed, it is known that several types of brain injury, driving microglia into an activated state, induce stronger response in mice lacking Cx3cr1 (Cardona et al., 2006). On the other hand, our reconstructions on perfused brains show that morphological differences among the two genotypes might be restricted to a subset of cells showing the largest surface area. It can’t be ruled out that patch clamp recording might have been primarily performed on these cells, as most visible in the slice depth, thus highlighting CX3CR1-dependent morphological defect.

Microglia is characterized by the ability to extend processes in response to ATP, an “alarm signal” released by injured or dying cells (Davalos et al., 2005; Avignone et al., 2008). We found that ATP-directed microglial processes extension was reduced in slices from postnatal hippocampus of Cx3cr1 mice. This finding is consistent with a previous report showing a reduced ability of microglia to migrate and extend processes in response to focal lesions in Cx3cr1 mice retina (Liang et al., 2009). Our data point to a defect relying in the lower number and less ramified morphology of microglial cells, rather than in a decrease in the intrinsic motility of processes. Quantitative time-lapse imaging analysis of individual microglial processes showed (i) lower density of processes and (ii) reduced directionality toward ATP in Cx3cr1 mice, but (iii) similar elongation speed in the two genotypes. Despite stronger GFP expression, CX3CR1GFP/GFP microglial processes are less numerous and are detected at higher distances from the ATP source, compared to CX3CR1+/GFP. Moreover, we measured a comparable mean velocity of processes elongation in the two genotypes. Another possible explanation, taking into account the reduced directionality, relies on lower ATP sensitivity of CX3CR1GFP/GFP microglial processes. However, it is unlikely that the observed difference in ATP induced processes extension is due to changes in the expression of purinergic receptors on CX3CR1GFP/GFP microglia (Arnoux et al., 2013), as RT-PCR analysis of hippocampal microglia at PNW 2 showed similar expression of p2y12 and p2y6 transcripts in the two genotypes (Table ).

Furthermore, RT-PCR analysis of the two genotypes did not highlight differences in polarization toward the least (M1) or the most (M2) migratory activation states (Lively and Schlichter, 2013), suggesting that CX3CR1-dependent functions at this stage of development do not involve changes in microglial polarization. It should be considered, however, that our bulk RT-PCR analysis may not have been sufficiently sensitive to detect small variations in gene expression or changes that occurred in a small fraction of cells. Finally, the lack of velocity increase in the close proximity of the ATP pipette tip observed in CX3CR1GFP/GFP processes may depend on longer time needed by knockout processes to reach the ATP-containing pipette. In alternative, it could be a direct effect of CX3CR1 deficiency, as fractalkine signaling is known to promote microglial migration (Maciejewski-Lenoir et al., 1999) and rapidly change in microglia morphology (Liang et al., 2009).

Conclusion

We can speculate that the observed difference in ATP-induced microglia rearrangement is due to defective branching and directional elongation of microglial processes, pointing to a reduced monitoring capacity of CX3CR1GFP/GFP microglia in the developing hippocampus.

The functional impairment of CX3CR1GFP/GFP microglia is further highlighted by the altered electrophysiological profile observed during postnatal development. Indeed, developing hippocampal microglia display two voltage dependent K+ currents: an outward rectifier current, resembling the delayed rectifier K+ current described in cultured rat microglia (IK) and an inward rectifier K+ current (IKir; Nörenberg et al., 1994). Although microglial cells in brain slices are generally considered silent (Boucsein et al., 2000), similar currents have been described in postnatal hippocampus (Schilling and Eder, 2007) and barrel cortex (Arnoux et al., 2013). We made the novel observation that the frequency of occurrence of K+ currents in hippocampal microglia changed during postnatal development: IK were more frequent at PNWs 2–3, while IKir were more frequent at PNW 6. Remarkably, the presence of IK is associated to a retracted morphology and reduced cell surface area resembling that of active microglia, following nerve lesion (Boucsein et al., 2000), epileptic state (Avignone et al., 2008), or LPS treatment (Nörenberg et al., 1994). These data suggest that microglia may have a transient propensity to be activated during hippocampal maturation, as the presence of IK is a typical feature of activated microglia in both slices and dissociated cell cultures, likely associated with the expression of Kv1.3 channels (Menteyne et al., 2009; Moussaud et al., 2009). However, RT-PCR analysis does not highlight a clear polarization toward the classical (M1) or alternative (M2) activation states, pointing to a localized phenomenon. In addition, the level of IK functional expression in developing microglia is lower, compared to typically active microglia in pathological contexts (Avignone et al., 2008; Menteyne et al., 2009), suggesting that this regulation may be part of physiological changes, due to varying environmental challenges during development (Eggen et al., 2013). Indeed, developmental regulation of IK has been reported in the barrel cortex (Arnoux et al., 2013). Such phenotypical changes, constituting a sort of developmental activation of microglia (Dalmau et al., 1998), could be induced by local neuronal signals, including cell death or synaptic elimination during developmental circuit refinement (Perry et al., 1985) and participate to the fine tuning of hippocampal synaptic connections (Paolicelli and Gross, 2011).

Strikingly, the occurrence of IK in the hippocampus was not developmentally regulated in mice lacking fractalkine signaling (Figure ). In this respect, our results differ from a previous report in the barrel cortex of Cx3cr1 mice, pointing to a delay in microglial maturation, associated with a delay in microglial migration into the barrels (Arnoux et al., 2013). We can speculate that lack of any developmental increase in IK expression in the hippocampus is associated with a loss of environmental influence on microglia maturation in a precise time window.

The expression of IKir also showed a dynamic developmental profile in control animals (apparently opposite to IK profile), that was absent in Cx3cr1 mice. This current, typical of dissociated microglia cell cultures (Kettenmann et al., 1990), has been proposed to represent a marker of early microglial activation (Boucsein et al., 2000; Kettenmann et al., 2011). Functional expression of IKir has been reported in the hippocampus (Schilling and Eder, 2007) and corpus callosum microglia during early postnatal development (Brockhaus et al., 1993), increasing in adult and aging mice (Schilling and Eder, 2014). Under our conditions, IKir was found in almost all microglia in control animals at PNWs 5 and 6, and was not associated to specific morphological features. Although its function is still unknown, it can be speculated that IKir frequency is maximal when microglia shows the greatest ramification, thus being maximally capable of sensing tissue signals. The reduced frequency of IKir in Cx3cr1 mice could reflect a reduced environmental sensitivity of these cells.

In conclusion, our data support the idea that CX3CR1 deficient microglia is unable to respond properly to specialized environmental signals during normal development (Paolicelli et al., 2014). We speculate that the observed deficit in microglia maturation implies reduced tissue monitoring, suggesting that a developmental microglial defect, partially corrected in the adult, could lead to the delay in synaptic maturation and defective synaptic connectivity reported in these mice (Paolicelli et al., 2011; Hoshiko et al., 2012; Zhan et al., 2014).

Table 1

Current densities of outward (IK; MP = +50 mV) and inward (IKir; MP = -150 mV) rectifier currents of microglia, in hippocampal slices from Cx3cr1 and Cx3cr1 mice at PNW 2 (p, t-test).

	Cx3cr1+/GFP (n/ntot)	Cx3cr1GFP/GFP (n/ntot)	p
IK (pA/pF)	5.2 ± 0.8 (46/88)	5.6 ± 0.8 (20/56)	0.74
IKir (pA/pF)	-2.6 ± 0.2 (38/88)	-3.0 ± 0.7 (13/56)	0.5

Table 2

Expression of selected M1/M2 polarization markers, P2y6 and P2y12 in microglial GFP positive cells isolated from hippocampus of Cx3cr1 (n = 4) and Cx3cr1 (n = 4) mice in the PNW 2.

	CX3CR1+/GFP	CX3CR1GFP/GFP	p
M1 polarization markers
cd86	1.00 ±0.32	0.55 ±0.16	0.23
il-1β	1.00 ±0.19	1.06 ±0,16	0.80
il-15	1.00 ±0.38	1.14 ±0.29	0.83
tnf-α	1.00 ± 0.22	1.72 ± 0.20	0.06
M2 polarization markers
arg-1	1.00 ± 0.25	0.63 ± 0.37	0.47
cd206	1.00 ± 0.52	1.03 ± 0.50	0.96
fizz-1	1.00 ± 0.19	0.71 ± 0.12	0.22
ym-1	1.00 ± 0.22	0.65 ± 0.11	0.20
Purinergic receptors
p2y6	1.00 ± 0.19	1.43 ± 0.29	0.26
p2y12	1.00 ± 0.28	1.47 ± 0.36	0.49