Literature DB >> 25872646

Whole-exome sequencing implicates UBE3D in age-related macular degeneration in East Asian populations.

Lv-Zhen Huang1, Ying-Jie Li2, Xue-Feng Xie3, Jing-Jing Zhang1, Ching-Yu Cheng4, Kenji Yamashiro5, Li-Jia Chen6, Xiao-Yun Ma7, Chui Ming G Cheung8, Yu-Sheng Wang9, Chun-Fang Zhang10, Yu-Jing Bai1, Jing Hou1, Xiao-Li Chen1, Yun Qi1, Shan-Shan Li1, Yao-Yao Sun1, Jun-Pu Mei3, Yong Cheng1, Wen-Zhen Yu1, Xiong-Bing Hu11, Feng-Feng Zhuang11, Lei Fan12, Yi Lu13, Xing-Huai Sun13, Xiang-Jia Zhu13, De-Fen Shen14, Chi-Chao Chan14, Ming-Wei Zhao1, Nagahisa Yoshimura5, Chi Pui Pang6, Tien Yin Wong4, Chiea Chuen Khor15, Kang Zhang16, Peng Zhou17, Xiao-Xin Li1.   

Abstract

Age-related macular degeneration (AMD) is a leading cause of irreversible central blindness among the elderly worldwide. We use exome sequencing to analyse nonsynonymous single-nucleotide variants (SNVs) across the whole genome of 216 neovascular AMD cases and 1,553 controls. As a follow-up validation, we evaluate 3,772 neovascular AMD cases and 6,942 controls from five independent cohorts in the East Asian population. Here we show strong evidence of an association at a novel, missense SNV, rs7739323, which is located in the ubiquitin protein ligase E3D (UBE3D) gene (Pmeta=1.46 × 10(-9), odds ratio (OR)=0.74, 95% confidence interval (CI): 0.63-0.88). Furthermore, ablation of the UBE3D protein lead to an abnormal amount of pigment granules deposited in retinal pigment epithelium microvilli area and an abnormal response on electroretinography (ERG) in UBE3D(+/-) heterozygous mice. Our findings indicate that the ubiquitin-proteasome system may play a role in the pathogenesis of neovascular AMD.

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Year:  2015        PMID: 25872646     DOI: 10.1038/ncomms7687

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  16 in total

1.  Systems genetics analysis of pharmacogenomics variation during antidepressant treatment.

Authors:  M B Madsen; L J A Kogelman; H N Kadarmideen; H B Rasmussen
Journal:  Pharmacogenomics J       Date:  2016-10-18       Impact factor: 3.550

2.  Regulation of the Ysh1 endonuclease of the mRNA cleavage/polyadenylation complex by ubiquitin-mediated degradation.

Authors:  Susan D Lee; Hui-Yun Liu; Joel H Graber; Daniel Heller-Trulli; Katarzyna Kaczmarek Michaels; Juan Francisco Cerezo; Claire L Moore
Journal:  RNA Biol       Date:  2020-02-12       Impact factor: 4.652

3.  Proteasome Activity Is Influenced by the HECT_2 Protein Ipa1 in Budding Yeast.

Authors:  Anne P Lutz; Sarah Schladebeck; Christian Renicke; Roberta Spadaccini; Hans-Ulrich Mösch; Christof Taxis
Journal:  Genetics       Date:  2018-03-08       Impact factor: 4.562

4.  Power Analysis for Genetic Association Test (PAGEANT) provides insights to challenges for rare variant association studies.

Authors:  Andriy Derkach; Haoyu Zhang; Nilanjan Chatterjee
Journal:  Bioinformatics       Date:  2018-05-01       Impact factor: 6.937

5.  Pharmacological Modulation of Photoreceptor Outer Segment Degradation in a Human iPS Cell Model of Inherited Macular Degeneration.

Authors:  Ruchira Singh; David Kuai; Karina E Guziewicz; Jackelyn Meyer; Molly Wilson; Jianfeng Lu; Molly Smith; Eric Clark; Amelia Verhoeven; Gustavo D Aguirre; David M Gamm
Journal:  Mol Ther       Date:  2015-08-24       Impact factor: 11.454

6.  Diurnal oscillations of endogenous H2O2 sustained by p66Shc regulate circadian clocks.

Authors:  Jian-Fei Pei; Xun-Kai Li; Wen-Qi Li; Qian Gao; Yang Zhang; Xiao-Man Wang; Jia-Qi Fu; Shen-Shen Cui; Jia-Hua Qu; Xiang Zhao; De-Long Hao; Dapeng Ju; Na Liu; Kate S Carroll; Jing Yang; Eric Erquan Zhang; Ji-Min Cao; Hou-Zao Chen; De-Pei Liu
Journal:  Nat Cell Biol       Date:  2019-11-25       Impact factor: 28.824

7.  A genome-wide association study identified a novel genetic loci STON1-GTF2A1L/LHCGR/FSHR for bilaterality of neovascular age-related macular degeneration.

Authors:  Kyoko Kawashima-Kumagai; Kenji Yamashiro; Munemitsu Yoshikawa; Masahiro Miyake; Gemmy Cheung Chui Ming; Qiao Fan; Jia Yu Koh; Masaaki Saito; Masako Sugahara-Kuroda; Maho Oishi; Yumiko Akagi-Kurashige; Isao Nakata; Hideo Nakanishi; Norimoto Gotoh; Akio Oishi; Hiroshi Tamura; Sotaro Ooto; Akitaka Tsujikawa; Yasuo Kurimoto; Tetsuju Sekiryu; Fumihiko Matsuda; Chiea-Chuen Khor; Ching-Yu Cheng; Tien Yin Wong; Nagahisa Yoshimura
Journal:  Sci Rep       Date:  2017-08-03       Impact factor: 4.379

8.  Ipa1 Is an RNA Polymerase II Elongation Factor that Facilitates Termination by Maintaining Levels of the Poly(A) Site Endonuclease Ysh1.

Authors:  Erika L Pearson; Joel H Graber; Susan D Lee; Kristoph S Naggert; Claire L Moore
Journal:  Cell Rep       Date:  2019-02-12       Impact factor: 9.423

Review 9.  Pachychoroid disease.

Authors:  Chui Ming Gemmy Cheung; Won Ki Lee; Hideki Koizumi; Kunal Dansingani; Timothy Y Y Lai; K Bailey Freund
Journal:  Eye (Lond)       Date:  2018-07-11       Impact factor: 3.775

10.  Geographic distribution of rare variants associated with age-related macular degeneration.

Authors:  Maartje J Geerlings; Eveline Kersten; Joannes M M Groenewoud; Lars G Fritsche; Carel B Hoyng; Eiko K de Jong; Anneke I den Hollander
Journal:  Mol Vis       Date:  2018-01-27       Impact factor: 2.367

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