Literature DB >> 25871083

Entropy-production-driven oscillators in simple nonequilibrium networks.

Jeffrey K Weber1, Vijay S Pande1.   

Abstract

The development of tractable nonequilibrium simulation methods represents a bottleneck for efforts to describe the functional dynamics that occur within living cells. We here employ a nonequilibrium approach called the λ ensemble to characterize the dissipative dynamics of a simple Markovian network driven by an external potential. In the highly dissipative regime brought about by the λ bias, we observe a dynamical structure characteristic of cellular architectures: The entropy production drives a damped oscillator over state populations in the network. We illustrate the properties of such oscillations in weakly and strongly driven regimes, and we discuss how control structures associated with the "dynamical phase transition" in the system can be related to switches and oscillators in cellular dynamics.

Mesh:

Year:  2015        PMID: 25871083     DOI: 10.1103/PhysRevE.91.032136

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  2 in total

1.  Rare Dissipative Transitions Punctuate the Initiation of Chemical Denaturation in Proteins.

Authors:  Jeffrey K Weber; Seung-Gu Kang; Ruhong Zhou
Journal:  Biophys J       Date:  2018-02-27       Impact factor: 4.033

2.  Phosphatidylserine-Induced Conformational Modulation of Immune Cell Exhaustion-Associated Receptor TIM3.

Authors:  Jeffrey K Weber; Ruhong Zhou
Journal:  Sci Rep       Date:  2017-10-19       Impact factor: 4.379

  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.