Literature DB >> 25867014

Natural genetic variation in Arabidopsis thaliana defense metabolism genes modulates field fitness.

Rachel Kerwin1, Julie Feusier1, Jason Corwin1, Matthew Rubin2, Catherine Lin1, Alise Muok1, Brandon Larson1, Baohua Li1, Bindu Joseph1, Marta Francisco1, Daniel Copeland1, Cynthia Weinig3, Daniel J Kliebenstein1.   

Abstract

Natural populations persist in complex environments, where biotic stressors, such as pathogen and insect communities, fluctuate temporally and spatially. These shifting biotic pressures generate heterogeneous selective forces that can maintain standing natural variation within a species. To directly test if genes containing causal variation for the Arabidopsis thaliana defensive compounds, glucosinolates (GSL) control field fitness and are therefore subject to natural selection, we conducted a multi-year field trial using lines that vary in only specific causal genes. Interestingly, we found that variation in these naturally polymorphic GSL genes affected fitness in each of our environments but the pattern fluctuated such that highly fit genotypes in one trial displayed lower fitness in another and that no GSL genotype or genotypes consistently out-performed the others. This was true both across locations and within the same location across years. These results indicate that environmental heterogeneity may contribute to the maintenance of GSL variation observed within Arabidopsis thaliana.

Entities:  

Keywords:  arabidopsis; ecology; evolutionary biology; fitness; genomics; glucosinolates; herbivory; natural variation; plant defense

Mesh:

Substances:

Year:  2015        PMID: 25867014      PMCID: PMC4396512          DOI: 10.7554/eLife.05604

Source DB:  PubMed          Journal:  Elife        ISSN: 2050-084X            Impact factor:   8.140


  78 in total

1.  Molecular analysis of FRIGIDA, a major determinant of natural variation in Arabidopsis flowering time.

Authors:  U Johanson; J West; C Lister; S Michaels; R Amasino; C Dean
Journal:  Science       Date:  2000-10-13       Impact factor: 47.728

2.  Comparative population genomics of maize domestication and improvement.

Authors:  Matthew B Hufford; Xun Xu; Joost van Heerwaarden; Tanja Pyhäjärvi; Jer-Ming Chia; Reed A Cartwright; Robert J Elshire; Jeffrey C Glaubitz; Kate E Guill; Shawn M Kaeppler; Jinsheng Lai; Peter L Morrell; Laura M Shannon; Chi Song; Nathan M Springer; Ruth A Swanson-Wagner; Peter Tiffin; Jun Wang; Gengyun Zhang; John Doebley; Michael D McMullen; Doreen Ware; Edward S Buckler; Shuang Yang; Jeffrey Ross-Ibarra
Journal:  Nat Genet       Date:  2012-06-03       Impact factor: 38.330

3.  Natural variation reveals that intracellular distribution of ELF3 protein is associated with function in the circadian clock.

Authors:  Muhammad Usman Anwer; Eleni Boikoglou; Eva Herrero; Marc Hallstein; Amanda Melaragno Davis; Geo Velikkakam James; Ferenc Nagy; Seth Jon Davis
Journal:  Elife       Date:  2014-05-27       Impact factor: 8.140

4.  Benzoic acid glucosinolate esters and other glucosinolates from Arabidopsis thaliana.

Authors:  Michael Reichelt; Paul D Brown; Bernd Schneider; Neil J Oldham; Einar Stauber; Jim Tokuhisa; Daniel J Kliebenstein; Thomas Mitchell-Olds; Jonathan Gershenzon
Journal:  Phytochemistry       Date:  2002-03       Impact factor: 4.072

5.  Local-scale patterns of genetic variability, outcrossing, and spatial structure in natural stands of Arabidopsis thaliana.

Authors:  Kirsten Bomblies; Levi Yant; Roosa A Laitinen; Sang-Tae Kim; Jesse D Hollister; Norman Warthmann; Joffrey Fitz; Detlef Weigel
Journal:  PLoS Genet       Date:  2010-03-26       Impact factor: 5.917

6.  Subclade of flavin-monooxygenases involved in aliphatic glucosinolate biosynthesis.

Authors:  Jing Li; Bjarne Gram Hansen; James A Ober; Daniel J Kliebenstein; Barbara Ann Halkier
Journal:  Plant Physiol       Date:  2008-09-17       Impact factor: 8.340

7.  Understanding the evolution of defense metabolites in Arabidopsis thaliana using genome-wide association mapping.

Authors:  Eva K F Chan; Heather C Rowe; Daniel J Kliebenstein
Journal:  Genetics       Date:  2009-09-07       Impact factor: 4.562

8.  Fitness effects associated with the major flowering time gene FRIGIDA in Arabidopsis thaliana in the field.

Authors:  Tonia M Korves; Karl J Schmid; Ana L Caicedo; Charlotte Mays; John R Stinchcombe; Michael D Purugganan; Johanna Schmitt
Journal:  Am Nat       Date:  2007-03-07       Impact factor: 3.926

9.  Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines.

Authors:  Susanna Atwell; Yu S Huang; Bjarni J Vilhjálmsson; Glenda Willems; Matthew Horton; Yan Li; Dazhe Meng; Alexander Platt; Aaron M Tarone; Tina T Hu; Rong Jiang; N Wayan Muliyati; Xu Zhang; Muhammad Ali Amer; Ivan Baxter; Benjamin Brachi; Joanne Chory; Caroline Dean; Marilyne Debieu; Juliette de Meaux; Joseph R Ecker; Nathalie Faure; Joel M Kniskern; Jonathan D G Jones; Todd Michael; Adnane Nemri; Fabrice Roux; David E Salt; Chunlao Tang; Marco Todesco; M Brian Traw; Detlef Weigel; Paul Marjoram; Justin O Borevitz; Joy Bergelson; Magnus Nordborg
Journal:  Nature       Date:  2010-03-24       Impact factor: 49.962

10.  A systems biology approach identifies a R2R3 MYB gene subfamily with distinct and overlapping functions in regulation of aliphatic glucosinolates.

Authors:  Ida Elken Sønderby; Bjarne Gram Hansen; Nanna Bjarnholt; Carla Ticconi; Barbara Ann Halkier; Daniel J Kliebenstein
Journal:  PLoS One       Date:  2007-12-19       Impact factor: 3.240

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  37 in total

1.  Natural Variation of Plant Metabolism: Genetic Mechanisms, Interpretive Caveats, and Evolutionary and Mechanistic Insights.

Authors:  Nicole E Soltis; Daniel J Kliebenstein
Journal:  Plant Physiol       Date:  2015-08-13       Impact factor: 8.340

2.  A Global Coexpression Network Approach for Connecting Genes to Specialized Metabolic Pathways in Plants.

Authors:  Jennifer H Wisecaver; Alexander T Borowsky; Vered Tzin; Georg Jander; Daniel J Kliebenstein; Antonis Rokas
Journal:  Plant Cell       Date:  2017-04-13       Impact factor: 11.277

3.  Daniel J. Kliebenstein.

Authors:  Emily Breeze
Journal:  Plant Cell       Date:  2018-10-29       Impact factor: 11.277

4.  Symphony of the Regulators: How Do Plants Control Complex Responses to Environmental Signals?

Authors:  Brook T Moyers
Journal:  Plant Cell       Date:  2018-02-12       Impact factor: 11.277

5.  Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.

Authors:  Baohua Li; Michelle Tang; Ayla Nelson; Hart Caligagan; Xue Zhou; Caitlin Clark-Wiest; Richard Ngo; Siobhan M Brady; Daniel J Kliebenstein
Journal:  Plant Cell       Date:  2018-01-09       Impact factor: 11.277

6.  Epistatic Transcription Factor Networks Differentially Modulate Arabidopsis Growth and Defense.

Authors:  Baohua Li; Michelle Tang; Céline Caseys; Ayla Nelson; Marium Zhou; Xue Zhou; Siobhan M Brady; Daniel J Kliebenstein
Journal:  Genetics       Date:  2019-12-18       Impact factor: 4.562

7.  Independent evolution of ancestral and novel defenses in a genus of toxic plants (Erysimum, Brassicaceae).

Authors:  Tobias Züst; Susan R Strickler; Adrian F Powell; Makenzie E Mabry; Hong An; Mahdieh Mirzaei; Thomas York; Cynthia K Holland; Pavan Kumar; Matthias Erb; Georg Petschenka; José-María Gómez; Francisco Perfectti; Caroline Müller; J Chris Pires; Lukas A Mueller; Georg Jander
Journal:  Elife       Date:  2020-04-07       Impact factor: 8.140

8.  Balancing of B6 Vitamers Is Essential for Plant Development and Metabolism in Arabidopsis.

Authors:  Maite Colinas; Marion Eisenhut; Takayuki Tohge; Marta Pesquera; Alisdair R Fernie; Andreas P M Weber; Teresa B Fitzpatrick
Journal:  Plant Cell       Date:  2016-02-08       Impact factor: 11.277

9.  Evolutionary routes to biochemical innovation revealed by integrative analysis of a plant-defense related specialized metabolic pathway.

Authors:  Gaurav D Moghe; Bryan J Leong; Steven M Hurney; A Daniel Jones; Robert L Last
Journal:  Elife       Date:  2017-08-30       Impact factor: 8.140

10.  Cytonuclear interactions affect adaptive traits of the annual plant Arabidopsis thaliana in the field.

Authors:  Fabrice Roux; Tristan Mary-Huard; Elise Barillot; Estelle Wenes; Lucy Botran; Stéphanie Durand; Romain Villoutreix; Marie-Laure Martin-Magniette; Christine Camilleri; Françoise Budar
Journal:  Proc Natl Acad Sci U S A       Date:  2016-03-15       Impact factor: 11.205

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