| Literature DB >> 25863333 |
Ashok K Sharma1, Ankit Gupta2, Sanjiv Kumar3, Darshan B Dhakan4, Vineet K Sharma5.
Abstract
Functional annotation of the gigantic metagenomic data is one of the major time-consuming and computationally demanding tasks, which is currently a bottleneck for the efficient analysis. The commonly used homology-based methods to functionally annotate and classify proteins are extremely slow. Therefore, to achieve faster and accurate functional annotation, we have developed an orthology-based functional classifier 'Woods' by using a combination of machine learning and similarity-based approaches. Woods displayed a precision of 98.79% on independent genomic dataset, 96.66% on simulated metagenomic dataset and >97% on two real metagenomic datasets. In addition, it performed >87 times faster than BLAST on the two real metagenomic datasets. Woods can be used as a highly efficient and accurate classifier with high-throughput capability which facilitates its usability on large metagenomic datasets.Keywords: Functional annotation; Machine learning; Metagenome; Random Forest
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Year: 2015 PMID: 25863333 DOI: 10.1016/j.ygeno.2015.04.001
Source DB: PubMed Journal: Genomics ISSN: 0888-7543 Impact factor: 5.736