Literature DB >> 25862923

Hydroxymethylation and its potential implication in DNA repair system: A review and future perspectives.

Ankita Shukla1, Manika Sehgal1, Tiratha Raj Singh2.   

Abstract

The 5-hydroxymethylcytosine (5-hmC) is known to exist as a predictive indicator for a variety of cancers, neurological abnormalities and other perilous diseases. The precursor of 5-hmC i.e. 5-methylcytosine (5mC) has already gained attention as an important epigenetic regulator whereas 5-hmC remains less explored. The two modified DNA bases (5mC and 5-hmC) have absolute diverse distribution, i.e. 5-hmC is mostly restrained to the 5' end of DNA with levels directing the gene transcription whereas 5mC is mainly located at the intra- or intergenic regions of DNA repeats and within certain gene bodies. It has been reported that levels of 5-hmC in different tissues provide a useful tool for detecting numerous associated diseases and their progression. Therefore, to unravel the role of hydroxymethylation in various resulting diseases in humans, comprehensive information on this crucial process has been explored and compiled for its implication in DNA repair system. The role of miRNAs in cancer through hypo- and hypermethylation has also been explored and discussed. In this review, a broad and exclusive insight into hydroxymethylation and its association with repair mechanisms is extensively presented and it is estimated that the accessible information will be of utmost use to the biological community working in the relevant research area.
Copyright © 2015 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Cancer; Cardiovascular; DNA repair; Hydroxymethylation; Psychotic disorders; TET family

Mesh:

Substances:

Year:  2015        PMID: 25862923     DOI: 10.1016/j.gene.2015.03.075

Source DB:  PubMed          Journal:  Gene        ISSN: 0378-1119            Impact factor:   3.688


  16 in total

1.  Label-free detection of missense mutations and methylation differences in the p53 gene using optically diffracting hydrogels.

Authors:  Kelsey I MacConaghy; Duncan M Chadly; Mark P Stoykovich; Joel L Kaar
Journal:  Analyst       Date:  2015-09-21       Impact factor: 4.616

Review 2.  DNA methylation in systemic lupus erythematosus.

Authors:  Christian M Hedrich; Katrin Mäbert; Thomas Rauen; George C Tsokos
Journal:  Epigenomics       Date:  2016-11-25       Impact factor: 4.778

3.  X-ray irradiation induces subtle changes in the genome-wide distribution of DNA hydroxymethylation with opposing trends in genic and intergenic regions.

Authors:  Benjamin V Becker; Leonhard Kaatsch; Richard Obermair; Gerrit Schrock; Matthias Port; Reinhard Ullmann
Journal:  Epigenetics       Date:  2019-01-29       Impact factor: 4.528

4.  Single-cell 5hmC sequencing reveals chromosome-wide cell-to-cell variability and enables lineage reconstruction.

Authors:  Dylan Mooijman; Siddharth S Dey; Jean-Charles Boisset; Nicola Crosetto; Alexander van Oudenaarden
Journal:  Nat Biotechnol       Date:  2016-06-27       Impact factor: 54.908

Review 5.  The role of active DNA demethylation and Tet enzyme function in memory formation and cocaine action.

Authors:  Yasaman Alaghband; Timothy W Bredy; Marcelo A Wood
Journal:  Neurosci Lett       Date:  2016-01-19       Impact factor: 3.046

6.  Aberrant hydroxymethylation of ANGPTL4 is associated with selective intrauterine growth restriction in monochorionic twin pregnancies.

Authors:  Yi Zhang; Dezhong Zheng; Qun Fang; Mei Zhong
Journal:  Epigenetics       Date:  2020-03-05       Impact factor: 4.528

7.  Synthesis of 5-Hydroxymethylcytidine- and 5-Hydroxymethyl-uridine-Modified RNA.

Authors:  Christian Riml; Ronald Micura
Journal:  Synthesis (Stuttg)       Date:  2016-04       Impact factor: 3.157

Review 8.  DNA methylation methods: Global DNA methylation and methylomic analyses.

Authors:  Shizhao Li; Trygve O Tollefsbol
Journal:  Methods       Date:  2020-10-09       Impact factor: 3.608

Review 9.  The role of epigenetic mechanisms in the regulation of gene expression in the cyclical endometrium.

Authors:  Alejandra Monserrat Retis-Resendiz; Ixchel Nayeli González-García; Moisés León-Juárez; Ignacio Camacho-Arroyo; Marco Cerbón; Edgar Ricardo Vázquez-Martínez
Journal:  Clin Epigenetics       Date:  2021-05-25       Impact factor: 6.551

10.  In silico structural analysis of sequences containing 5-hydroxymethylcytosine reveals its potential as binding regulator for development, ageing and cancer-related transcription factors.

Authors:  Andigoni Malousi; Alexandra-Zoi Andreou; Sofia Kouidou
Journal:  Epigenetics       Date:  2020-09-02       Impact factor: 4.528

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