Literature DB >> 25862231

Dynamic Succession of Groundwater Functional Microbial Communities in Response to Emulsified Vegetable Oil Amendment during Sustained In Situ U(VI) Reduction.

Ping Zhang1, Wei-Min Wu2, Joy D Van Nostrand1, Ye Deng1, Zhili He1, Thomas Gihring3, Gengxin Zhang3, Chris W Schadt3, David Watson3, Phil Jardine3, Craig S Criddle2, Scott Brooks3, Terence L Marsh4, James M Tiedje4, Adam P Arkin5, Jizhong Zhou6.   

Abstract

A pilot-scale field experiment demonstrated that a one-time amendment of emulsified vegetable oil (EVO) reduced groundwater U(VI) concentrations for 1 year in a fast-flowing aquifer. However, little is known about how EVO amendment stimulates the functional gene composition, structure, and dynamics of groundwater microbial communities toward prolonged U(VI) reduction. In this study, we hypothesized that EVO amendment would shift the functional gene composition and structure of groundwater microbial communities and stimulate key functional genes/groups involved in EVO biodegradation and reduction of electron acceptors in the aquifer. To test these hypotheses, groundwater microbial communities after EVO amendment were analyzed using a comprehensive functional gene microarray. Our results showed that EVO amendment stimulated sequential shifts in the functional composition and structure of groundwater microbial communities. Particularly, the relative abundance of key functional genes/groups involved in EVO biodegradation and the reduction of NO3 (-), Mn(IV), Fe(III), U(VI), and SO4 (2-) significantly increased, especially during the active U(VI) reduction period. The relative abundance for some of these key functional genes/groups remained elevated over 9 months. Montel tests suggested that the dynamics in the abundance, composition, and structure of these key functional genes/groups were significantly correlated with groundwater concentrations of acetate, NO3 (-), Mn(II), Fe(II), U(VI), and SO4 (2-). Our results suggest that EVO amendment stimulated dynamic succession of key functional microbial communities. This study improves our understanding of the composition, structure, and function changes needed for groundwater microbial communities to sustain a long-term U(VI) reduction.
Copyright © 2015, American Society for Microbiology. All Rights Reserved.

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Year:  2015        PMID: 25862231      PMCID: PMC4524159          DOI: 10.1128/AEM.00043-15

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  45 in total

1.  Significant association between sulfate-reducing bacteria and uranium-reducing microbial communities as revealed by a combined massively parallel sequencing-indicator species approach.

Authors:  Erick Cardenas; Wei-Min Wu; Mary Beth Leigh; Jack Carley; Sue Carroll; Terry Gentry; Jian Luo; David Watson; Baohua Gu; Matthew Ginder-Vogel; Peter K Kitanidis; Philip M Jardine; Jizhong Zhou; Craig S Criddle; Terence L Marsh; James M Tiedje
Journal:  Appl Environ Microbiol       Date:  2010-08-20       Impact factor: 4.792

2.  Metagenomic analysis reveals a marked divergence in the structure of belowground microbial communities at elevated CO2.

Authors:  Zhili He; Meiying Xu; Ye Deng; Sanghoon Kang; Laurie Kellogg; Liyou Wu; Joy D Van Nostrand; Sarah E Hobbie; Peter B Reich; Jizhong Zhou
Journal:  Ecol Lett       Date:  2010-03-23       Impact factor: 9.492

3.  Dynamics of microbial community composition and function during in situ bioremediation of a uranium-contaminated aquifer.

Authors:  Joy D Van Nostrand; Liyou Wu; Wei-Min Wu; Zhijian Huang; Terry J Gentry; Ye Deng; Jack Carley; Sue Carroll; Zhili He; Baohua Gu; Jian Luo; Craig S Criddle; David B Watson; Philip M Jardine; Terence L Marsh; James M Tiedje; Terry C Hazen; Jizhong Zhou
Journal:  Appl Environ Microbiol       Date:  2011-04-15       Impact factor: 4.792

4.  In situ bioreduction of uranium (VI) to submicromolar levels and reoxidation by dissolved oxygen.

Authors:  Wei-Min Wu; Jack Carley; Jian Luo; Matthew A Ginder-Vogel; Erick Cardenas; Mary Beth Leigh; Chiachi Hwang; Shelly D Kelly; Chuanmin Ruan; Liyou Wu; Joy Van Nostrand; Terry Gentry; Kenneth Lowe; Tonia Mehlhorn; Sue Carroll; Wensui Luo; Matthew W Fields; Baohua Gu; David Watson; Kenneth M Kemner; Terence Marsh; James Tiedje; Jizhong Zhou; Scott Fendorf; Peter K Kitanidis; Philip M Jardine; Craig S Criddle
Journal:  Environ Sci Technol       Date:  2007-08-15       Impact factor: 9.028

5.  Microbial communities in contaminated sediments, associated with bioremediation of uranium to submicromolar levels.

Authors:  Erick Cardenas; Wei-Min Wu; Mary Beth Leigh; Jack Carley; Sue Carroll; Terry Gentry; Jian Luo; David Watson; Baohua Gu; Matthew Ginder-Vogel; Peter K Kitanidis; Philip M Jardine; Jizhong Zhou; Craig S Criddle; Terence L Marsh; James M Tiedje
Journal:  Appl Environ Microbiol       Date:  2008-05-02       Impact factor: 4.792

6.  Diversity and characterization of sulfate-reducing bacteria in groundwater at a uranium mill tailings site.

Authors:  Y J Chang; A D Peacock; P E Long; J R Stephen; J P McKinley; S J Macnaughton; A K Hussain; A M Saxton; D C White
Journal:  Appl Environ Microbiol       Date:  2001-07       Impact factor: 4.792

7.  Alkaline anaerobic respiration: isolation and characterization of a novel alkaliphilic and metal-reducing bacterium.

Authors:  Qi Ye; Yul Roh; Susan L Carroll; Benjamin Blair; Jizhong Zhou; Chuanlun L Zhang; Matthew W Fields
Journal:  Appl Environ Microbiol       Date:  2004-09       Impact factor: 4.792

8.  Diversity and distribution of anaeromyxobacter strains in a uranium-contaminated subsurface environment with a nonuniform groundwater flow.

Authors:  Sara H Thomas; Elizabeth Padilla-Crespo; Phillip M Jardine; Robert A Sanford; Frank E Löffler
Journal:  Appl Environ Microbiol       Date:  2009-04-03       Impact factor: 4.792

9.  Subsurface clade of Geobacteraceae that predominates in a diversity of Fe(III)-reducing subsurface environments.

Authors:  Dawn E Holmes; Regina A O'Neil; Helen A Vrionis; Lucie A N'guessan; Irene Ortiz-Bernad; Maria J Larrahondo; Lorrie A Adams; Joy A Ward; Julie S Nicoll; Kelly P Nevin; Milind A Chavan; Jessica P Johnson; Philip E Long; Derek R Lovley
Journal:  ISME J       Date:  2007-10-18       Impact factor: 10.302

10.  Biostimulation induces syntrophic interactions that impact C, S and N cycling in a sediment microbial community.

Authors:  Kim M Handley; Nathan C VerBerkmoes; Carl I Steefel; Kenneth H Williams; Itai Sharon; Christopher S Miller; Kyle R Frischkorn; Karuna Chourey; Brian C Thomas; Manesh B Shah; Philip E Long; Robert L Hettich; Jillian F Banfield
Journal:  ISME J       Date:  2012-11-29       Impact factor: 10.302

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  5 in total

Review 1.  Metagenomic applications in environmental monitoring and bioremediation.

Authors:  Stephen M Techtmann; Terry C Hazen
Journal:  J Ind Microbiol Biotechnol       Date:  2016-08-24       Impact factor: 3.346

2.  Contrasting Ecological Processes and Functional Compositions Between Intestinal Bacterial Community in Healthy and Diseased Shrimp.

Authors:  Jinyong Zhu; Wenfang Dai; Qiongfen Qiu; Chunming Dong; Jinjie Zhang; Jinbo Xiong
Journal:  Microb Ecol       Date:  2016-08-18       Impact factor: 4.552

3.  Microbial Functional Gene Diversity Predicts Groundwater Contamination and Ecosystem Functioning.

Authors:  Zhili He; Ping Zhang; Linwei Wu; Andrea M Rocha; Qichao Tu; Zhou Shi; Bo Wu; Yujia Qin; Jianjun Wang; Qingyun Yan; Daniel Curtis; Daliang Ning; Joy D Van Nostrand; Liyou Wu; Yunfeng Yang; Dwayne A Elias; David B Watson; Michael W W Adams; Matthew W Fields; Eric J Alm; Terry C Hazen; Paul D Adams; Adam P Arkin; Jizhong Zhou
Journal:  MBio       Date:  2018-02-20       Impact factor: 7.867

4.  Mechanism Across Scales: A Holistic Modeling Framework Integrating Laboratory and Field Studies for Microbial Ecology.

Authors:  Lauren M Lui; Erica L-W Majumder; Heidi J Smith; Hans K Carlson; Frederick von Netzer; Matthew W Fields; David A Stahl; Jizhong Zhou; Terry C Hazen; Nitin S Baliga; Paul D Adams; Adam P Arkin
Journal:  Front Microbiol       Date:  2021-03-24       Impact factor: 5.640

5.  Microbial Interactions With Dissolved Organic Matter Drive Carbon Dynamics and Community Succession.

Authors:  Xiaoqin Wu; Liyou Wu; Yina Liu; Ping Zhang; Qinghao Li; Jizhong Zhou; Nancy J Hess; Terry C Hazen; Wanli Yang; Romy Chakraborty
Journal:  Front Microbiol       Date:  2018-06-08       Impact factor: 5.640

  5 in total

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