Literature DB >> 25862224

Steroid hydroxylation by basidiomycete peroxygenases: a combined experimental and computational study.

Esteban D Babot1, José C Del Río1, Marina Cañellas2, Ferran Sancho2, Fátima Lucas3, Víctor Guallar4, Lisbeth Kalum5, Henrik Lund5, Glenn Gröbe6, Katrin Scheibner6, René Ullrich7, Martin Hofrichter7, Angel T Martínez8, Ana Gutiérrez9.   

Abstract

The goal of this study is the selective oxyfunctionalization of steroids under mild and environmentally friendly conditions using fungal enzymes. With this purpose, peroxygenases from three basidiomycete species were tested for the hydroxylation of a variety of steroidal compounds, using H2O2 as the only cosubstrate. Two of them are wild-type enzymes from Agrocybe aegerita and Marasmius rotula, and the third one is a recombinant enzyme from Coprinopsis cinerea. The enzymatic reactions on free and esterified sterols, steroid hydrocarbons, and ketones were monitored by gas chromatography, and the products were identified by mass spectrometry. Hydroxylation at the side chain over the steroidal rings was preferred, with the 25-hydroxyderivatives predominating. Interestingly, antiviral and other biological activities of 25-hydroxycholesterol have been reported recently (M. Blanc et al., Immunity 38:106-118, 2013, http://dx.doi.org/10.1016/j.immuni.2012.11.004). However, hydroxylation in the ring moiety and terminal hydroxylation at the side chain also was observed in some steroids, the former favored by the absence of oxygenated groups at C-3 and by the presence of conjugated double bonds in the rings. To understand the yield and selectivity differences between the different steroids, a computational study was performed using Protein Energy Landscape Exploration (PELE) software for dynamic ligand diffusion. These simulations showed that the active-site geometry and hydrophobicity favors the entrance of the steroid side chain, while the entrance of the ring is energetically penalized. Also, a direct correlation between the conversion rate and the side chain entrance ratio could be established that explains the various reaction yields observed.
Copyright © 2015, American Society for Microbiology. All Rights Reserved.

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Year:  2015        PMID: 25862224      PMCID: PMC4524154          DOI: 10.1128/AEM.00660-15

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  33 in total

1.  Exploration of Protein Conformational Change with PELE and Meta-Dynamics.

Authors:  Benjamin P Cossins; Ali Hosseini; Victor Guallar
Journal:  J Chem Theory Comput       Date:  2012-02-09       Impact factor: 6.006

Review 2.  Microbial steroid transformations: current state and prospects.

Authors:  Marina V Donova; Olga V Egorova
Journal:  Appl Microbiol Biotechnol       Date:  2012-05-06       Impact factor: 4.813

3.  Structural basis of substrate conversion in a new aromatic peroxygenase: cytochrome P450 functionality with benefits.

Authors:  Klaus Piontek; Eric Strittmatter; René Ullrich; Glenn Gröbe; Marek J Pecyna; Martin Kluge; Katrin Scheibner; Martin Hofrichter; Dietmar A Plattner
Journal:  J Biol Chem       Date:  2013-10-14       Impact factor: 5.157

Review 4.  New and classic families of secreted fungal heme peroxidases.

Authors:  Martin Hofrichter; René Ullrich; Marek J Pecyna; Christiane Liers; Taina Lundell
Journal:  Appl Microbiol Biotechnol       Date:  2010-05-22       Impact factor: 4.813

5.  Novel haloperoxidase from the agaric basidiomycete Agrocybe aegerita oxidizes aryl alcohols and aldehydes.

Authors:  René Ullrich; Jörg Nüske; Katrin Scheibner; Jörg Spantzel; Martin Hofrichter
Journal:  Appl Environ Microbiol       Date:  2004-08       Impact factor: 4.792

6.  25-Hydroxycholesterol acts as an amplifier of inflammatory signaling.

Authors:  Elizabeth S Gold; Alan H Diercks; Irina Podolsky; Rebecca L Podyminogin; Peter S Askovich; Piper M Treuting; Alan Aderem
Journal:  Proc Natl Acad Sci U S A       Date:  2014-07-03       Impact factor: 11.205

7.  On the substrate specificity of human CYP27A1: implications for bile acid and cholestanol formation.

Authors:  Maria Norlin; Sara von Bahr; Ingemar Bjorkhem; Kjell Wikvall
Journal:  J Lipid Res       Date:  2003-06-01       Impact factor: 5.922

8.  The coprophilous mushroom Coprinus radians secretes a haloperoxidase that catalyzes aromatic peroxygenation.

Authors:  Dau Hung Anh; René Ullrich; Dirk Benndorf; Ales Svatos; Alexander Muck; Martin Hofrichter
Journal:  Appl Environ Microbiol       Date:  2007-06-29       Impact factor: 4.792

9.  The transcription factor STAT-1 couples macrophage synthesis of 25-hydroxycholesterol to the interferon antiviral response.

Authors:  Mathieu Blanc; Wei Yuan Hsieh; Kevin A Robertson; Kai A Kropp; Thorsten Forster; Guanghou Shui; Paul Lacaze; Steven Watterson; Samantha J Griffiths; Nathanael J Spann; Anna Meljon; Simon Talbot; Kathiresan Krishnan; Douglas F Covey; Markus R Wenk; Marie Craigon; Zsolts Ruzsics; Jürgen Haas; Ana Angulo; William J Griffiths; Christopher K Glass; Yuqin Wang; Peter Ghazal
Journal:  Immunity       Date:  2012-12-27       Impact factor: 31.745

10.  H++ 3.0: automating pK prediction and the preparation of biomolecular structures for atomistic molecular modeling and simulations.

Authors:  Ramu Anandakrishnan; Boris Aguilar; Alexey V Onufriev
Journal:  Nucleic Acids Res       Date:  2012-05-08       Impact factor: 16.971

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  6 in total

1.  The unravelling of the complex pattern of tyrosinase inhibition.

Authors:  Batel Deri; Margarita Kanteev; Mor Goldfeder; Daniel Lecina; Victor Guallar; Noam Adir; Ayelet Fishman
Journal:  Sci Rep       Date:  2016-10-11       Impact factor: 4.379

2.  Fatty Acid Chain Shortening by a Fungal Peroxygenase.

Authors:  Andrés Olmedo; José C Del Río; Jan Kiebist; René Ullrich; Martin Hofrichter; Katrin Scheibner; Angel T Martínez; Ana Gutiérrez
Journal:  Chemistry       Date:  2017-11-20       Impact factor: 5.236

3.  A Peroxygenase from Chaetomium globosum Catalyzes the Selective Oxygenation of Testosterone.

Authors:  Jan Kiebist; Kai-Uwe Schmidtke; Jörg Zimmermann; Harald Kellner; Nico Jehmlich; René Ullrich; Daniel Zänder; Martin Hofrichter; Katrin Scheibner
Journal:  Chembiochem       Date:  2017-03-01       Impact factor: 3.164

Review 4.  Oxygenating Biocatalysts for Hydroxyl Functionalisation in Drug Discovery and Development.

Authors:  Sacha N Charlton; Martin A Hayes
Journal:  ChemMedChem       Date:  2022-05-02       Impact factor: 3.540

5.  Exploring the Role of Phenylalanine Residues in Modulating the Flexibility and Topography of the Active Site in the Peroxygenase Variant PaDa-I.

Authors:  Joaquin Ramirez-Ramirez; Javier Martin-Diaz; Nina Pastor; Miguel Alcalde; Marcela Ayala
Journal:  Int J Mol Sci       Date:  2020-08-10       Impact factor: 5.923

6.  Enzymatic Epoxidation of Long-Chain Terminal Alkenes by Fungal Peroxygenases.

Authors:  Esteban D Babot; Carmen Aranda; Jan Kiebist; Katrin Scheibner; René Ullrich; Martin Hofrichter; Angel T Martínez; Ana Gutiérrez
Journal:  Antioxidants (Basel)       Date:  2022-03-08
  6 in total

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