Literature DB >> 25859056

A stochastic agent-based model of pathogen propagation in dynamic multi-relational social networks.

Bilal Khan1, Kirk Dombrowski2, Mohamed Saad3.   

Abstract

We describe a general framework for modeling and stochastic simulation of epidemics in realistic dynamic social networks, which incorporates heterogeneity in the types of individuals, types of interconnecting risk-bearing relationships, and types of pathogens transmitted across them. Dynamism is supported through arrival and departure processes, continuous restructuring of risk relationships, and changes to pathogen infectiousness, as mandated by natural history; dynamism is regulated through constraints on the local agency of individual nodes and their risk behaviors, while simulation trajectories are validated using system-wide metrics. To illustrate its utility, we present a case study that applies the proposed framework towards a simulation of HIV in artificial networks of intravenous drug users (IDUs) modeled using data collected in the Social Factors for HIV Risk survey.

Entities:  

Year:  2014        PMID: 25859056      PMCID: PMC4387577          DOI: 10.1177/0037549714526947

Source DB:  PubMed          Journal:  Simulation        ISSN: 0037-5497            Impact factor:   1.377


  33 in total

1.  Emergence of scaling in random networks

Authors: 
Journal:  Science       Date:  1999-10-15       Impact factor: 47.728

2.  Sociometric risk networks and risk for HIV infection.

Authors:  S R Friedman; A Neaigus; B Jose; R Curtis; M Goldstein; G Ildefonso; R B Rothenberg; D C Des Jarlais
Journal:  Am J Public Health       Date:  1997-08       Impact factor: 9.308

3.  Assessing the effects of human mixing patterns on human immunodeficiency virus-1 interhost phylogenetics through social network simulation.

Authors:  Steven M Goodreau
Journal:  Genetics       Date:  2006-04       Impact factor: 4.562

4.  Birds of a feather, or friend of a friend? Using exponential random graph models to investigate adolescent social networks.

Authors:  Steven M Goodreau; James A Kitts; Martina Morris
Journal:  Demography       Date:  2009-02

5.  Declining seroprevalence in a very large HIV epidemic: injecting drug users in New York City, 1991 to 1996.

Authors:  D C Des Jarlais; T Perlis; S R Friedman; S Deren; T Chapman; J L Sotheran; S Tortu; M Beardsley; D Paone; L V Torian; S T Beatrice; E DeBernardo; E Monterroso; M Marmor
Journal:  Am J Public Health       Date:  1998-12       Impact factor: 9.308

6.  HIV-1 infection among intravenous drug users in Manhattan, New York City, from 1977 through 1987.

Authors:  D C Des Jarlais; S R Friedman; D M Novick; J L Sotheran; P Thomas; S R Yancovitz; D Mildvan; J Weber; M J Kreek; R Maslansky
Journal:  JAMA       Date:  1989-02-17       Impact factor: 56.272

7.  Episodic HIV Risk Behavior Can Greatly Amplify HIV Prevalence and the Fraction of Transmissions from Acute HIV Infection.

Authors:  Xinyu Zhang; Lin Zhong; Ethan Romero-Severson; Shah Jamal Alam; Christopher J Henry; Erik M Volz; James S Koopman
Journal:  Stat Commun Infect Dis       Date:  2012-11-01

8.  Sharing of drug preparation equipment as a risk factor for hepatitis C.

Authors:  H Hagan; H Thiede; N S Weiss; S G Hopkins; J S Duchin; E R Alexander
Journal:  Am J Public Health       Date:  2001-01       Impact factor: 9.308

9.  Detectable signals of episodic risk effects on acute HIV transmission: strategies for analyzing transmission systems using genetic data.

Authors:  Shah Jamal Alam; Xinyu Zhang; Ethan Obie Romero-Severson; Christopher Henry; Lin Zhong; Erik M Volz; Bluma G Brenner; James S Koopman
Journal:  Epidemics       Date:  2012-11-23       Impact factor: 4.396

10.  Transient high levels of viremia in patients with primary human immunodeficiency virus type 1 infection.

Authors:  E S Daar; T Moudgil; R D Meyer; D D Ho
Journal:  N Engl J Med       Date:  1991-04-04       Impact factor: 91.245

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  8 in total

1.  EpiModel: An R Package for Mathematical Modeling of Infectious Disease over Networks.

Authors:  Samuel M Jenness; Steven M Goodreau; Martina Morris
Journal:  J Stat Softw       Date:  2018-04-20       Impact factor: 6.440

2.  Cost-effectiveness of Direct Antiviral Agents for Hepatitis C Virus Infection and a Combined Intervention of Syringe Access and Medication-assisted Therapy for Opioid Use Disorders in an Injection Drug Use Population.

Authors:  Elizabeth R Stevens; Kimberly A Nucifora; Holly Hagan; Ashly E Jordan; Jennifer Uyei; Bilal Khan; Kirk Dombrowski; Don des Jarlais; R Scott Braithwaite
Journal:  Clin Infect Dis       Date:  2020-06-10       Impact factor: 9.079

3.  Rural and urban injection drug use in Puerto Rico: Network implications for human immunodeficiency virus and hepatitis C virus infection.

Authors:  Courtney Thrash; Melissa Welch-Lazoritz; Gertrude Gauthier; Bilal Khan; Roberto Abadie; Kirk Dombrowski; Sandra Miranda De Leon; Yadira Rolon Colon
Journal:  J Ethn Subst Abuse       Date:  2017-06-30       Impact factor: 1.507

4.  Using Network Sampling and Recruitment Data to Understand Social Structures Related to Community Health in a Population of People Who Inject Drugs in Rural Puerto Rico.

Authors:  Mayra Coronado-García; Courtney R Thrash; Melissa Welch-Lazoritz; Robin Gauthier; Juan Carlos Reyes; Bilal Khan; Kirk Dombrowski
Journal:  P R Health Sci J       Date:  2017-06       Impact factor: 0.705

5.  The Interaction of Risk Network Structures and Virus Natural History in the Non-spreading of HIV Among People Who Inject Drugs in the Early Stages of the Epidemic.

Authors:  Kirk Dombrowski; Bilal Khan; Patrick Habecker; Holly Hagan; Samuel R Friedman; Mohamed Saad
Journal:  AIDS Behav       Date:  2017-04

6.  Current Rural Drug Use in the US Midwest.

Authors:  Kirk Dombrowski; Devan Crawford; Bilal Khan; Kimberly Tyler
Journal:  J Drug Abuse       Date:  2016-08-17

7.  Combination interventions for Hepatitis C and Cirrhosis reduction among people who inject drugs: An agent-based, networked population simulation experiment.

Authors:  Bilal Khan; Ian Duncan; Mohamad Saad; Daniel Schaefer; Ashly Jordan; Daniel Smith; Alan Neaigus; Don Des Jarlais; Holly Hagan; Kirk Dombrowski
Journal:  PLoS One       Date:  2018-11-29       Impact factor: 3.240

8.  Simulating exposure-related behaviors using agent-based models embedded with needs-based artificial intelligence.

Authors:  Namdi Brandon; Kathie L Dionisio; Kristin Isaacs; Rogelio Tornero-Velez; Dustin Kapraun; R Woodrow Setzer; Paul S Price
Journal:  J Expo Sci Environ Epidemiol       Date:  2018-09-21       Impact factor: 5.563

  8 in total

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