Literature DB >> 25849511

Cloning, expression, purification, crystallization and preliminary X-ray diffraction analysis of AerF from Microcystis aeruginosa, a putative reductase participating in aeruginosin biosynthesis.

Ruyi Ding1, Cui Xu1, Xu Chen1, Mengyun Bao1, Xiaoting Qiu1.   

Abstract

The 2-carboxy-6-hydroxyoctahydroindole moiety is an essential residue for the antithrombotic activity of aeruginosins, which are a class of cyanobacteria-derived bioactive linear tetrapeptides. The biosynthetic pathway of the 2-carboxy-6-hydroxyoctahydroindole moiety has not yet been resolved. AerF was indicated to be involved in the biosynthesis of the 2-carboxy-6-hydroxyoctahydroindole moiety. This study reports the cloning, expression, purification, crystallization and preliminary X-ray diffraction analysis of AerF from Microcystis aeruginosa with a C-terminal His6 tag. The crystal diffracted to a maximum resolution of 1.38 Å and belonged to the tetragonal space group P4322, with unit-cell parameters a = b = 101.581, c = 116.094 Å. The calculated Matthews coefficient and solvent content of the crystal were 2.47 Å(3) Da(-1) and 50.32%, respectively. The initial model of the structure was obtained by the molecular-replacement method and refinement of the structure is in progress.

Entities:  

Keywords:  2-carboxy-6-hydroxyoctahydroindole moiety; AerF; Microcystis aeruginosa; aeruginosin

Mesh:

Substances:

Year:  2015        PMID: 25849511      PMCID: PMC4388185          DOI: 10.1107/S2053230X15005063

Source DB:  PubMed          Journal:  Acta Crystallogr F Struct Biol Commun        ISSN: 2053-230X            Impact factor:   1.056


  15 in total

1.  The crystal structure of l-sorbose reductase from Gluconobacter frateurii complexed with NADPH and l-sorbose.

Authors:  Keiko Kubota; Koji Nagata; Masahiko Okai; Ken-Ichi Miyazono; Wichai Soemphol; Jun Ohtsuka; Akihiro Yamamura; Natsaran Saichana; Hirohide Toyama; Kazunobu Matsushita; Masaru Tanokura
Journal:  J Mol Biol       Date:  2011-01-26       Impact factor: 5.469

2.  A unique catalytic triad revealed by the crystal structure of APE0912, a short-chain dehydrogenase/reductase family protein from Aeropyrum pernix K1.

Authors:  Akihiro Yamamura; Takefumi Ichimura; Futa Mimoto; Jun Ohtsuka; Ken-ichi Miyazono; Masahiko Okai; Masayuki Kamo; Woo-Cheol Lee; Koji Nagata; Masaru Tanokura
Journal:  Proteins       Date:  2008-03

3.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

Review 4.  Aeruginosin analogs and other compounds with rigid bicyclic structure as potential antithrombotic agents.

Authors:  Guijun Wang; Navneet Goyal
Journal:  Cardiovasc Hematol Agents Med Chem       Date:  2009-04

5.  Plasticity and evolution of aeruginosin biosynthesis in cyanobacteria.

Authors:  Keishi Ishida; Martin Welker; Guntram Christiansen; Sabrina Cadel-Six; Christiane Bouchier; Elke Dittmann; Christian Hertweck; Nicole Tandeau de Marsac
Journal:  Appl Environ Microbiol       Date:  2009-02-05       Impact factor: 4.792

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Authors:  Malligarjunan Rajavel; Kumar Perinbam; B Gopal
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2013-02-16

7.  REFMAC5 for the refinement of macromolecular crystal structures.

Authors:  Garib N Murshudov; Pavol Skubák; Andrey A Lebedev; Navraj S Pannu; Roberto A Steiner; Robert A Nicholls; Martyn D Winn; Fei Long; Alexei A Vagin
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-03-18

8.  Discovery of an allosteric inhibitor binding site in 3-Oxo-acyl-ACP reductase from Pseudomonas aeruginosa.

Authors:  Cyprian D Cukier; Anthony G Hope; Ayssar A Elamin; Lucile Moynie; Robert Schnell; Susanne Schach; Holger Kneuper; Mahavir Singh; James H Naismith; Ylva Lindqvist; David W Gray; Gunter Schneider
Journal:  ACS Chem Biol       Date:  2013-09-23       Impact factor: 5.100

Review 9.  Medium- and short-chain dehydrogenase/reductase gene and protein families : the SDR superfamily: functional and structural diversity within a family of metabolic and regulatory enzymes.

Authors:  K L Kavanagh; H Jörnvall; B Persson; U Oppermann
Journal:  Cell Mol Life Sci       Date:  2008-12       Impact factor: 9.261

10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

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