Literature DB >> 25849502

Crystallization and preliminary X-ray characterization of the eukaryotic replication terminator Reb1-Ter DNA complex.

Rahul Jaiswal1, Samarendra K Singh2, Deepak Bastia2, Carlos R Escalante1.   

Abstract

The Reb1 protein from Schizosaccharomyces pombe is a member of a family of proteins that control programmed replication termination and/or transcription termination in eukaryotic cells. These events occur at naturally occurring replication fork barriers (RFBs), where Reb1 binds to termination (Ter) DNA sites and coordinates the polar arrest of replication forks and transcription approaching in opposite directions. The Reb1 DNA-binding and replication-termination domain was expressed in Escherichia coli, purified and crystallized in complex with a 26-mer DNA Ter site. Batch crystallization under oil was required to produce crystals of good quality for data collection. Crystals grew in space group P2₁, with unit-cell parameters a = 68.9, b = 162.9, c = 71.1 Å, β = 94.7°. The crystals diffracted to a resolution of 3.0 Å. The crystals were mosaic and required two or three cycles of annealing. This study is the first to yield structural information about this important family of proteins and will provide insights into the mechanism of replication and transcription termination.

Entities:  

Keywords:  RNA Pol I; Reb1; eukaryotic; protein–DNA complex; transcription termination

Mesh:

Substances:

Year:  2015        PMID: 25849502      PMCID: PMC4388176          DOI: 10.1107/S2053230X15004112

Source DB:  PubMed          Journal:  Acta Crystallogr F Struct Biol Commun        ISSN: 2053-230X            Impact factor:   1.056


  14 in total

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Authors:  Deepak Bastia; Samarendra K Singh
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Authors:  Samarendra K Singh; Sarah Sabatinos; Susan Forsburg; Deepak Bastia
Journal:  Cell       Date:  2010-09-17       Impact factor: 41.582

Review 10.  Mechanisms of polar arrest of a replication fork.

Authors:  Daniel L Kaplan; Deepak Bastia
Journal:  Mol Microbiol       Date:  2009-03-04       Impact factor: 3.501

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  6 in total

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2.  Functional architecture of the Reb1-Ter complex of Schizosaccharomyces pombe.

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4.  iDNAProt-ES: Identification of DNA-binding Proteins Using Evolutionary and Structural Features.

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Journal:  Sci Rep       Date:  2017-11-02       Impact factor: 4.379

5.  HMMBinder: DNA-Binding Protein Prediction Using HMM Profile Based Features.

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Journal:  Biomed Res Int       Date:  2017-11-14       Impact factor: 3.411

6.  A Model Stacking Framework for Identifying DNA Binding Proteins by Orchestrating Multi-View Features and Classifiers.

Authors:  Xiu-Juan Liu; Xiu-Jun Gong; Hua Yu; Jia-Hui Xu
Journal:  Genes (Basel)       Date:  2018-08-01       Impact factor: 4.096

  6 in total

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