Literature DB >> 25849093

AceCloud: Molecular Dynamics Simulations in the Cloud.

M J Harvey1, G De Fabritiis2,3.   

Abstract

We present AceCloud, an on-demand service for molecular dynamics simulations. AceCloud is designed to facilitate the secure execution of large ensembles of simulations on an external cloud computing service (currently Amazon Web Services). The AceCloud client, integrated into the ACEMD molecular dynamics package, provides an easy-to-use interface that abstracts all aspects of interaction with the cloud services. This gives the user the experience that all simulations are running on their local machine, minimizing the learning curve typically associated with the transition to using high performance computing services.

Mesh:

Year:  2015        PMID: 25849093     DOI: 10.1021/acs.jcim.5b00086

Source DB:  PubMed          Journal:  J Chem Inf Model        ISSN: 1549-9596            Impact factor:   4.956


  6 in total

Review 1.  Providing data science support for systems pharmacology and its implications to drug discovery.

Authors:  Thomas Hart; Lei Xie
Journal:  Expert Opin Drug Discov       Date:  2016-01-09       Impact factor: 6.098

2.  Structure and assembly of the mitochondrial membrane remodelling GTPase Mgm1.

Authors:  Katja Faelber; Lea Dietrich; Jeffrey K Noel; Florian Wollweber; Anna-Katharina Pfitzner; Alexander Mühleip; Ricardo Sánchez; Misha Kudryashev; Nicolas Chiaruttini; Hauke Lilie; Jeanette Schlegel; Eva Rosenbaum; Manuel Hessenberger; Claudia Matthaeus; Séverine Kunz; Alexander von der Malsburg; Frank Noé; Aurélien Roux; Martin van der Laan; Werner Kühlbrandt; Oliver Daumke
Journal:  Nature       Date:  2019-07-10       Impact factor: 49.962

3.  GROMACS in the Cloud: A Global Supercomputer to Speed Up Alchemical Drug Design.

Authors:  Carsten Kutzner; Christian Kniep; Austin Cherian; Ludvig Nordstrom; Helmut Grubmüller; Bert L de Groot; Vytautas Gapsys
Journal:  J Chem Inf Model       Date:  2022-03-30       Impact factor: 4.956

Review 4.  Miscellaneous Topics in Computer-Aided Drug Design: Synthetic Accessibility and GPU Computing, and Other Topics.

Authors:  Yoshifumi Fukunishi; Tadaaki Mashimo; Kiyotaka Misoo; Yoshinori Wakabayashi; Toshiaki Miyaki; Seiji Ohta; Mayu Nakamura; Kazuyoshi Ikeda
Journal:  Curr Pharm Des       Date:  2016       Impact factor: 3.116

Review 5.  Genetic engineering of inorganic functional modular materials.

Authors:  Yi Li; Jihong Yu
Journal:  Chem Sci       Date:  2016-03-29       Impact factor: 9.825

Review 6.  Bridging Molecular Docking to Molecular Dynamics in Exploring Ligand-Protein Recognition Process: An Overview.

Authors:  Veronica Salmaso; Stefano Moro
Journal:  Front Pharmacol       Date:  2018-08-22       Impact factor: 5.810

  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.