Literature DB >> 25848023

Control of bacterial exoelectrogenesis by c-AMP-GMP.

James W Nelson1, Narasimhan Sudarsan2, Grace E Phillips3, Shira Stav4, Christina E Lünse4, Phillip J McCown4, Ronald R Breaker5.   

Abstract

Major changes in bacterial physiology including biofilm and spore formation involve signaling by the cyclic dinucleotides c-di-GMP and c-di-AMP. Recently, another second messenger dinucleotide, c-AMP-GMP, was found to control chemotaxis and colonization by Vibrio cholerae. We have identified a superregulon of genes controlled by c-AMP-GMP in numerous Deltaproteobacteria, including Geobacter species that use extracellular insoluble metal oxides as terminal electron acceptors. This exoelectrogenic process has been studied for its possible utility in energy production and bioremediation. Many genes involved in adhesion, pilin formation, and others that are important for exoelectrogenesis are controlled by members of a variant riboswitch class that selectively bind c-AMP-GMP. These RNAs constitute, to our knowledge, the first known specific receptors for c-AMP-GMP and reveal that this molecule is used by many bacteria to control specialized physiological processes.

Entities:  

Keywords:  GEMM; Geobacter; c-di-GMP; riboswitch; second messenger

Mesh:

Substances:

Year:  2015        PMID: 25848023      PMCID: PMC4418907          DOI: 10.1073/pnas.1419264112

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  49 in total

Review 1.  Interactions of the c-di-GMP riboswitch with its second messenger ligand.

Authors:  Kathryn D Smith; Scott A Strobel
Journal:  Biochem Soc Trans       Date:  2011-04       Impact factor: 5.407

2.  Infernal 1.0: inference of RNA alignments.

Authors:  Eric P Nawrocki; Diana L Kolbe; Sean R Eddy
Journal:  Bioinformatics       Date:  2009-03-23       Impact factor: 6.937

3.  Alignment of the c-type cytochrome OmcS along pili of Geobacter sulfurreducens.

Authors:  Ching Leang; Xinlei Qian; Tünde Mester; Derek R Lovley
Journal:  Appl Environ Microbiol       Date:  2010-04-16       Impact factor: 4.792

4.  Role of Geobacter sulfurreducens outer surface c-type cytochromes in reduction of soil humic acid and anthraquinone-2,6-disulfonate.

Authors:  James W Voordeckers; Byoung-Chan Kim; Mounir Izallalen; Derek R Lovley
Journal:  Appl Environ Microbiol       Date:  2010-02-12       Impact factor: 4.792

5.  A c-type cytochrome and a transcriptional regulator responsible for enhanced extracellular electron transfer in Geobacter sulfurreducens revealed by adaptive evolution.

Authors:  Pier-Luc Tremblay; Zarath M Summers; Richard H Glaven; Kelly P Nevin; Karsten Zengler; Christian L Barrett; Yu Qiu; Bernhard O Palsson; Derek R Lovley
Journal:  Environ Microbiol       Date:  2011-01       Impact factor: 5.491

6.  Structural basis of ligand binding by a c-di-GMP riboswitch.

Authors:  Kathryn D Smith; Sarah V Lipchock; Tyler D Ames; Jimin Wang; Ronald R Breaker; Scott A Strobel
Journal:  Nat Struct Mol Biol       Date:  2009-11-08       Impact factor: 15.369

7.  An allosteric self-splicing ribozyme triggered by a bacterial second messenger.

Authors:  Elaine R Lee; Jenny L Baker; Zasha Weinberg; Narasimhan Sudarsan; Ronald R Breaker
Journal:  Science       Date:  2010-08-13       Impact factor: 47.728

8.  Community cyberinfrastructure for Advanced Microbial Ecology Research and Analysis: the CAMERA resource.

Authors:  Shulei Sun; Jing Chen; Weizhong Li; Ilkay Altintas; Abel Lin; Steve Peltier; Karen Stocks; Eric E Allen; Mark Ellisman; Jeffrey Grethe; John Wooley
Journal:  Nucleic Acids Res       Date:  2010-11-02       Impact factor: 16.971

9.  R2R--software to speed the depiction of aesthetic consensus RNA secondary structures.

Authors:  Zasha Weinberg; Ronald R Breaker
Journal:  BMC Bioinformatics       Date:  2011-01-04       Impact factor: 3.169

10.  Recognition of the bacterial second messenger cyclic diguanylate by its cognate riboswitch.

Authors:  Nadia Kulshina; Nathan J Baird; Adrian R Ferré-D'Amaré
Journal:  Nat Struct Mol Biol       Date:  2009-11-08       Impact factor: 15.369

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  42 in total

1.  Bioinformatic analysis of riboswitch structures uncovers variant classes with altered ligand specificity.

Authors:  Zasha Weinberg; James W Nelson; Christina E Lünse; Madeline E Sherlock; Ronald R Breaker
Journal:  Proc Natl Acad Sci U S A       Date:  2017-03-06       Impact factor: 11.205

2.  Structural basis for molecular discrimination by a 3',3'-cGAMP sensing riboswitch.

Authors:  Aiming Ren; Xin C Wang; Colleen A Kellenberger; Kanagalaghatta R Rajashankar; Roger A Jones; Ming C Hammond; Dinshaw J Patel
Journal:  Cell Rep       Date:  2015-03-26       Impact factor: 9.423

3.  Enzymatic synthesis of cyclic dinucleotide analogs by a promiscuous cyclic-AMP-GMP synthetase and analysis of cyclic dinucleotide responsive riboswitches.

Authors:  Katherine D Launer-Felty; Scott A Strobel
Journal:  Nucleic Acids Res       Date:  2018-04-06       Impact factor: 16.971

Review 4.  Sustained sensing as an emerging principle in second messenger signaling systems.

Authors:  Mona W Orr; Michael Y Galperin; Vincent T Lee
Journal:  Curr Opin Microbiol       Date:  2016-10-01       Impact factor: 7.934

Review 5.  Cyclic di-GMP: second messenger extraordinaire.

Authors:  Urs Jenal; Alberto Reinders; Christian Lori
Journal:  Nat Rev Microbiol       Date:  2017-02-06       Impact factor: 60.633

6.  A minimalist biosensor: Quantitation of cyclic di-GMP using the conformational change of a riboswitch aptamer.

Authors:  Colleen A Kellenberger; Jade Sales-Lee; Yuchen Pan; Madalee M Gassaway; Amy E Herr; Ming C Hammond
Journal:  RNA Biol       Date:  2015-06-26       Impact factor: 4.652

7.  Global RNA Fold and Molecular Recognition for a pfl Riboswitch Bound to ZMP, a Master Regulator of One-Carbon Metabolism.

Authors:  Aiming Ren; Kanagalaghatta R Rajashankar; Dinshaw J Patel
Journal:  Structure       Date:  2015-06-25       Impact factor: 5.006

Review 8.  RNA systems biology: uniting functional discoveries and structural tools to understand global roles of RNAs.

Authors:  Eric J Strobel; Kyle E Watters; David Loughrey; Julius B Lucks
Journal:  Curr Opin Biotechnol       Date:  2016-04-30       Impact factor: 9.740

Review 9.  Synthetic Biology of Small RNAs and Riboswitches.

Authors:  Jordan K Villa; Yichi Su; Lydia M Contreras; Ming C Hammond
Journal:  Microbiol Spectr       Date:  2018-05

10.  Hybrid promiscuous (Hypr) GGDEF enzymes produce cyclic AMP-GMP (3', 3'-cGAMP).

Authors:  Zachary F Hallberg; Xin C Wang; Todd A Wright; Beiyan Nan; Omer Ad; Jongchan Yeo; Ming C Hammond
Journal:  Proc Natl Acad Sci U S A       Date:  2016-02-02       Impact factor: 11.205

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