Literature DB >> 25844249

Crystal structure of 1-{2-[(2-meth-oxy-phen-yl)selan-yl]phen-yl}-4-phenyl-1H-1,2,3-triazole.

Leandro R S Camargo1, Julio Zukerman-Schpector1, Anna M Deobald2, Antonio L Braga3, Edward R T Tiekink4.   

Abstract

In the title compound, C21H17N3OSe, the dihedral angles between the central five-membered ring and the C- and N-bound rings are 17.89 (10) and 42.35 (10)°, respectively, indicating the mol-ecule is twisted. The dihedral angle between the n class="Chemical">Se-bound rings is 85.36 (10)°. A close intra-molecular Se⋯O contact of 2.8507 (13) Å is noted. In the crystal, C-H⋯O, C-H⋯N and C-H⋯π inter-actions lead to the formation of supra-molecular layers parallel to (011); these stack with no specific inter-molecular inter-actions between them.

Entities:  

Keywords:  C—H⋯π inter­actions; Se⋯O halogen bonding; crystal structure; hydrogen bonding; organoselenium

Year:  2015        PMID: 25844249      PMCID: PMC4350762          DOI: 10.1107/S2056989015003230

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For background to aryl­seleno-n class="Chemical">1,2,3-triazoles and to the synthesis of the title compound, see: Deobald et al. (2011 ▸). For an analysis of intra- and inter­molecular Se⋯O inter­actions, see: Linden et al. (2014 ▸). For a related organoselenium compound with a 1,2,3-triazole residue, see: Camargo et al. (2015 ▸).

Experimental

Crystal data

C21H17N3OSe M = 406.33 Triclinic, a = 5.6565 (3) Å b = 10.3682 (5) Å c = 15.3358 (7) Å α = 81.604 (4)° β = 80.006 (4)° γ = 85.340 (4)° V = 874.83 (8) Å3 Z = 2 Mo Kα radiation μ = 2.16 mm−1 T = 100 K 0.30 × 0.20 × 0.10 mm

Data collection

Agilent SuperNova CCD diffractometer Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011 ▸) T min = 0.759, T max = 1.000 6845 measured reflections 3869 independent reflections 3548 reflections with I > 2σ(I) R int = 0.040

Refinement

R[F 2 > 2σ(F 2)] = 0.028 wR(F 2) = 0.064 S = 1.01 3869 reflections 236 parameters H-atom parameters constrained Δρmax = 0.41 e Å−3 Δρmin = −0.52 e Å−3

Data collection: CrysAlis PRO (Agilent, 2011 ▸); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SIR2014 (Burla et al., 2015 ▸); program(s) un class="Chemical">sed to refine structure: SHELXL2014 (Sheldrick, 2015 ▸); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▸) and DIAMOND (Brandenburg, 2006 ▸); software used to prepare material for publication: MarvinSketch (ChemAxon, 2010 ▸) and publCIF (Westrip, 2010 ▸). Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S2056989015003230/hg5432sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015003230/hg5432Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015003230/hg5432Isup3.cml Click here for additional data file. . DOI: 10.1107/S2056989015003230/hg5432fig1.tif The mol­ecular structure of the title compound showing the atom-labelling scheme and displacement ellipsoids at the 70% probability level. Click here for additional data file. a . DOI: 10.1107/S2056989015003230/hg5432fig2.tif A view in projection down the a axis of the unit-cell contents. The C—H⋯O, C—H⋯N and C—H⋯π inter­actions are shown as orange, blue and purple dashed lines, respectively. CCDC reference: 1049507 Additional supporting information: crystallographic information; 3D view; checkCIF report
C21H17N3OSeZ = 2
Mr = 406.33F(000) = 412
Triclinic, P1Dx = 1.543 Mg m3
a = 5.6565 (3) ÅMo Kα radiation, λ = 0.71073 Å
b = 10.3682 (5) ÅCell parameters from 4524 reflections
c = 15.3358 (7) Åθ = 2.6–29.2°
α = 81.604 (4)°µ = 2.16 mm1
β = 80.006 (4)°T = 100 K
γ = 85.340 (4)°Prism, colourless
V = 874.83 (8) Å30.30 × 0.20 × 0.10 mm
Agilent SuperNova CCD diffractometer3548 reflections with I > 2σ(I)
Radiation source: SuperNova (Cu) X-ray SourceRint = 0.040
ω scansθmax = 27.5°, θmin = 2.6°
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011)h = −6→7
Tmin = 0.759, Tmax = 1.000k = −13→12
6845 measured reflectionsl = −19→19
3869 independent reflections
Refinement on F20 restraints
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.028H-atom parameters constrained
wR(F2) = 0.064w = 1/[σ2(Fo2) + (0.026P)2 + 0.4456P] where P = (Fo2 + 2Fc2)/3
S = 1.01(Δ/σ)max = 0.002
3869 reflectionsΔρmax = 0.41 e Å3
236 parametersΔρmin = −0.52 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
Se0.46182 (3)0.71551 (2)0.79326 (2)0.01503 (7)
O10.5130 (2)0.51326 (12)0.68268 (9)0.0185 (3)
N10.8216 (3)0.94528 (14)0.79605 (10)0.0128 (3)
N21.0599 (3)0.96928 (15)0.78243 (11)0.0154 (3)
N31.1085 (3)1.03509 (15)0.70214 (10)0.0150 (3)
C10.4930 (4)0.4251 (2)0.62080 (14)0.0255 (5)
H1A0.35700.45490.58970.038*
H1B0.46690.33740.65330.038*
H1C0.64140.42270.57710.038*
C20.6840 (3)0.48102 (18)0.73647 (12)0.0164 (4)
C30.8446 (4)0.37256 (18)0.73332 (13)0.0209 (4)
H30.84040.31390.69160.025*
C41.0113 (4)0.34994 (19)0.79132 (14)0.0238 (4)
H41.11960.27500.78970.029*
C51.0204 (4)0.4358 (2)0.85130 (14)0.0227 (4)
H51.13550.42020.89050.027*
C60.8611 (3)0.54507 (19)0.85434 (13)0.0194 (4)
H60.86840.60410.89560.023*
C70.6917 (3)0.56852 (17)0.79755 (12)0.0150 (4)
C80.5446 (3)0.78849 (18)0.89132 (12)0.0153 (4)
C90.4431 (4)0.73766 (19)0.97760 (13)0.0194 (4)
H90.32360.67580.98560.023*
C100.5126 (4)0.7755 (2)1.05209 (13)0.0223 (4)
H100.44270.73861.11040.027*
C110.6845 (4)0.8671 (2)1.04128 (13)0.0224 (4)
H110.73470.89221.09200.027*
C120.7825 (4)0.92197 (19)0.95603 (13)0.0182 (4)
H120.89740.98630.94850.022*
C130.7135 (3)0.88317 (17)0.88174 (12)0.0133 (4)
C140.7201 (3)0.99764 (17)0.72442 (12)0.0127 (3)
H140.55690.99580.71720.015*
C150.9046 (3)1.05438 (17)0.66405 (12)0.0124 (3)
C160.8998 (3)1.12626 (17)0.57456 (12)0.0126 (4)
C171.0842 (3)1.20866 (18)0.53447 (13)0.0166 (4)
H171.21311.21730.56510.020*
C181.0791 (3)1.27779 (19)0.44998 (13)0.0192 (4)
H181.20471.33340.42330.023*
C190.8925 (3)1.26635 (19)0.40436 (13)0.0184 (4)
H190.89031.31360.34650.022*
C200.7089 (3)1.18527 (18)0.44379 (13)0.0180 (4)
H200.58021.17720.41290.022*
C210.7127 (3)1.11581 (18)0.52828 (12)0.0152 (4)
H210.58611.06060.55470.018*
U11U22U33U12U13U23
Se0.01551 (10)0.01235 (10)0.01832 (11)−0.00120 (7)−0.00576 (7)−0.00192 (7)
O10.0237 (7)0.0152 (7)0.0177 (7)−0.0024 (5)−0.0049 (6)−0.0032 (5)
N10.0117 (7)0.0131 (7)0.0145 (8)−0.0021 (6)−0.0051 (6)−0.0002 (6)
N20.0108 (7)0.0180 (8)0.0185 (8)−0.0012 (6)−0.0056 (6)−0.0015 (6)
N30.0125 (7)0.0174 (8)0.0155 (8)−0.0012 (6)−0.0040 (6)−0.0011 (6)
C10.0338 (12)0.0244 (11)0.0210 (10)−0.0045 (9)−0.0057 (9)−0.0090 (8)
C20.0193 (9)0.0138 (9)0.0147 (9)−0.0045 (7)0.0008 (8)0.0010 (7)
C30.0252 (10)0.0148 (9)0.0200 (10)−0.0012 (8)0.0030 (8)−0.0017 (8)
C40.0218 (10)0.0165 (10)0.0282 (11)0.0032 (8)0.0033 (9)0.0028 (8)
C50.0182 (10)0.0219 (10)0.0265 (11)0.0008 (8)−0.0053 (9)0.0021 (8)
C60.0182 (9)0.0181 (9)0.0218 (10)−0.0020 (7)−0.0031 (8)−0.0024 (8)
C70.0148 (9)0.0112 (8)0.0168 (9)−0.0014 (7)0.0006 (7)0.0014 (7)
C80.0142 (9)0.0152 (9)0.0168 (9)0.0021 (7)−0.0053 (7)−0.0016 (7)
C90.0177 (9)0.0185 (10)0.0200 (10)−0.0012 (7)−0.0018 (8)0.0020 (8)
C100.0228 (10)0.0273 (11)0.0139 (9)0.0043 (8)−0.0026 (8)0.0031 (8)
C110.0243 (10)0.0285 (11)0.0154 (10)0.0017 (8)−0.0081 (8)−0.0020 (8)
C120.0178 (9)0.0205 (10)0.0179 (10)−0.0017 (7)−0.0074 (8)−0.0017 (8)
C130.0129 (8)0.0135 (8)0.0126 (9)0.0018 (7)−0.0029 (7)0.0006 (7)
C140.0129 (8)0.0135 (8)0.0129 (9)−0.0002 (7)−0.0056 (7)−0.0021 (7)
C150.0110 (8)0.0123 (8)0.0148 (9)−0.0003 (6)−0.0031 (7)−0.0043 (7)
C160.0122 (8)0.0121 (8)0.0127 (9)0.0015 (7)−0.0007 (7)−0.0022 (7)
C170.0139 (9)0.0183 (9)0.0183 (10)−0.0031 (7)−0.0036 (8)−0.0022 (7)
C180.0178 (9)0.0187 (9)0.0191 (10)−0.0047 (7)0.0002 (8)0.0018 (8)
C190.0199 (10)0.0193 (9)0.0136 (9)0.0020 (8)0.0000 (8)0.0012 (7)
C200.0168 (9)0.0208 (10)0.0174 (10)−0.0006 (8)−0.0060 (8)−0.0021 (8)
C210.0134 (9)0.0160 (9)0.0163 (9)−0.0032 (7)−0.0023 (7)−0.0018 (7)
Se—C81.9202 (19)C8—C131.400 (2)
Se—C71.9224 (19)C9—C101.388 (3)
O1—C21.368 (2)C9—H90.9500
O1—C11.434 (2)C10—C111.387 (3)
N1—C141.351 (2)C10—H100.9500
N1—N21.365 (2)C11—C121.387 (3)
N1—C131.433 (2)C11—H110.9500
N2—N31.313 (2)C12—C131.388 (3)
N3—C151.369 (2)C12—H120.9500
C1—H1A0.9800C14—C151.378 (2)
C1—H1B0.9800C14—H140.9500
C1—H1C0.9800C15—C161.467 (2)
C2—C31.388 (3)C16—C211.392 (3)
C2—C71.404 (3)C16—C171.402 (2)
C3—C41.389 (3)C17—C181.390 (3)
C3—H30.9500C17—H170.9500
C4—C51.380 (3)C18—C191.385 (3)
C4—H40.9500C18—H180.9500
C5—C61.390 (3)C19—C201.388 (3)
C5—H50.9500C19—H190.9500
C6—C71.388 (3)C20—C211.390 (3)
C6—H60.9500C20—H200.9500
C8—C91.393 (3)C21—H210.9500
C8—Se—C796.32 (8)C11—C10—C9119.82 (18)
C2—O1—C1117.14 (16)C11—C10—H10120.1
C14—N1—N2110.78 (14)C9—C10—H10120.1
C14—N1—C13130.06 (15)C12—C11—C10119.69 (19)
N2—N1—C13118.87 (15)C12—C11—H11120.2
N3—N2—N1106.67 (14)C10—C11—H11120.2
N2—N3—C15109.61 (14)C11—C12—C13120.24 (18)
O1—C1—H1A109.5C11—C12—H12119.9
O1—C1—H1B109.5C13—C12—H12119.9
H1A—C1—H1B109.5C12—C13—C8120.86 (16)
O1—C1—H1C109.5C12—C13—N1116.82 (16)
H1A—C1—H1C109.5C8—C13—N1122.32 (16)
H1B—C1—H1C109.5N1—C14—C15104.97 (16)
O1—C2—C3125.05 (17)N1—C14—H14127.5
O1—C2—C7114.90 (17)C15—C14—H14127.5
C3—C2—C7120.05 (19)N3—C15—C14107.96 (16)
C2—C3—C4119.93 (19)N3—C15—C16122.74 (15)
C2—C3—H3120.0C14—C15—C16129.29 (17)
C4—C3—H3120.0C21—C16—C17118.71 (17)
C5—C4—C3120.32 (19)C21—C16—C15121.23 (16)
C5—C4—H4119.8C17—C16—C15120.06 (17)
C3—C4—H4119.8C18—C17—C16120.19 (18)
C4—C5—C6120.0 (2)C18—C17—H17119.9
C4—C5—H5120.0C16—C17—H17119.9
C6—C5—H5120.0C19—C18—C17120.64 (17)
C7—C6—C5120.45 (19)C19—C18—H18119.7
C7—C6—H6119.8C17—C18—H18119.7
C5—C6—H6119.8C18—C19—C20119.46 (18)
C6—C7—C2119.22 (18)C18—C19—H19120.3
C6—C7—Se125.27 (14)C20—C19—H19120.3
C2—C7—Se115.50 (15)C19—C20—C21120.26 (18)
C9—C8—C13117.89 (17)C19—C20—H20119.9
C9—C8—Se117.98 (14)C21—C20—H20119.9
C13—C8—Se123.97 (14)C20—C21—C16120.73 (17)
C10—C9—C8121.44 (18)C20—C21—H21119.6
C10—C9—H9119.3C16—C21—H21119.6
C8—C9—H9119.3
C14—N1—N2—N3−0.75 (19)C9—C8—C13—N1−177.53 (17)
C13—N1—N2—N3−175.16 (14)Se—C8—C13—N17.1 (3)
N1—N2—N3—C150.31 (19)C14—N1—C13—C12−133.19 (19)
C1—O1—C2—C32.6 (3)N2—N1—C13—C1240.0 (2)
C1—O1—C2—C7−178.26 (16)C14—N1—C13—C846.3 (3)
O1—C2—C3—C4179.81 (17)N2—N1—C13—C8−140.54 (18)
C7—C2—C3—C40.7 (3)N2—N1—C14—C150.86 (19)
C2—C3—C4—C5−0.9 (3)C13—N1—C14—C15174.46 (17)
C3—C4—C5—C60.4 (3)N2—N3—C15—C140.2 (2)
C4—C5—C6—C70.2 (3)N2—N3—C15—C16179.29 (16)
C5—C6—C7—C2−0.5 (3)N1—C14—C15—N3−0.65 (19)
C5—C6—C7—Se−179.52 (14)N1—C14—C15—C16−179.64 (17)
O1—C2—C7—C6−179.22 (16)N3—C15—C16—C21162.95 (17)
C3—C2—C7—C60.0 (3)C14—C15—C16—C21−18.2 (3)
O1—C2—C7—Se−0.1 (2)N3—C15—C16—C17−17.9 (3)
C3—C2—C7—Se179.15 (13)C14—C15—C16—C17161.00 (18)
C13—C8—C9—C10−2.4 (3)C21—C16—C17—C18−0.2 (3)
Se—C8—C9—C10173.23 (15)C15—C16—C17—C18−179.43 (17)
C8—C9—C10—C110.9 (3)C16—C17—C18—C190.0 (3)
C9—C10—C11—C121.1 (3)C17—C18—C19—C200.2 (3)
C10—C11—C12—C13−1.5 (3)C18—C19—C20—C21−0.2 (3)
C11—C12—C13—C80.0 (3)C19—C20—C21—C160.0 (3)
C11—C12—C13—N1179.48 (17)C17—C16—C21—C200.2 (3)
C9—C8—C13—C121.9 (3)C15—C16—C21—C20179.44 (17)
Se—C8—C13—C12−173.39 (15)
D—H···AD—HH···AD···AD—H···A
C18—H18···O1i0.952.543.472 (2)165
C14—H14···N3ii0.952.583.520 (2)170
C10—H10···Cg1iii0.952.823.630 (2)144
Table 1

Hydrogen-bond geometry (, )

Cg1 is the centroid of the C1C6 ring.

DHA DHHA D A DHA
C18H18O1i 0.952.543.472(2)165
C14H14N3ii 0.952.583.520(2)170
C10H10Cg1iii 0.952.823.630(2)144

Symmetry codes: (i) ; (ii) ; (iii) .

  2 in total

1.  Intra- and intermolecular Se···X (X = Se, O) interactions in selenium-containing heterocycles: 3-benzoylimino-5-(morpholin-4-yl)-1,2,4-diselenazole.

Authors:  Anthony Linden; Yuehui Zhou; Heinz Heimgartner
Journal:  Acta Crystallogr C Struct Chem       Date:  2014-04-18       Impact factor: 1.172

2.  Crystal structure refinement with SHELXL.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr C Struct Chem       Date:  2015-01-01       Impact factor: 1.172

  2 in total

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