Literature DB >> 25844242

Crystal structure of 2-{[(naphthalen-1-yl)oxy]meth-yl}-5-(2,4,5-tri-fluoro-phen-yl)-1,3,4-oxa-diazole.

Muniyappan Govindhan1, Kathavarayan Subramanian2, Vijayan Viswanathan3, Devadasan Velmurugan3.   

Abstract

In the title compound C19H11F3N2O2, the oxa-diazole ring and the naphthalene ring system are approximately planar (r.m.s. deviations of 0.001 and 0.020 Å, respectively) and the oxa-diazole ring makes dihedral angles of 13.11 (1) and 7.59 (1)° with the naphthalene ring system and the tri-fluoro-phenyl ring, respectively. In the crystal, C-H⋯N hydrogen bonds link mol-ecules into chains along the a-axis direction, while C-H⋯F contacts form additional chains along the ac diagonal. These contacts generate sheets of mol-ecules approximately parallel to the (011) plane.

Entities:  

Keywords:  1,3,4-oxa­diazole; crystal structure; hydrogen bonding; naphthalen-1-yl­oxy; tri­fluoro­phen­yl

Year:  2015        PMID: 25844242      PMCID: PMC4350736          DOI: 10.1107/S2056989015003205

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For the biological activity and other applications of triazole derivatives, see: Desai et al. (2014 ▸); Bhat et al. (2011 ▸); Katrin et al. (2005 ▸); Shailaja et al. (2010 ▸).

Experimental

Crystal data

C19H11F3N2O2 M = 356.30 Triclinic, a = 7.4817 (5) Å b = 7.5928 (5) Å c = 15.7908 (10) Å α = 78.673 (3)° β = 78.404 (3)° γ = 65.370 (3)° V = 792.36 (9) Å3 Z = 2 Mo Kα radiation μ = 0.12 mm−1 T = 293 K 0.25 × 0.15 × 0.10 mm

Data collection

Bruker SMART APEXII area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2008 ▸) T min = 0.970, T max = 0.988 11539 measured reflections 3330 independent reflections 2402 reflections with I > 2σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.140 S = 1.04 3330 reflections 236 parameters H-atom parameters constrained Δρmax = 0.22 e Å−3 Δρmin = −0.31 e Å−3

Data collection: APEX2 (Bruker, 2008 ▸); cell refinement: SAINT (Bruker, 2008 ▸); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▸); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▸); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▸). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S2056989015003205/sj5445sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015003205/sj5445Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015003205/sj5445Isup3.cml Click here for additional data file. . DOI: 10.1107/S2056989015003205/sj5445fig1.tif The mol­ecular structure of the title compound, showing the atomic numbering with displacement ellipsoids drawn at the 30% probability level. Click here for additional data file. a . DOI: 10.1107/S2056989015003205/sj5445fig2.tif Crystal packing of the title compound viewed along the a axis H-atoms not involved in H-bonds have been excluded for clarity. CCDC reference: 1049573 Additional supporting information: crystallographic information; 3D view; checkCIF report
C19H11F3N2O2Z = 2
Mr = 356.30F(000) = 364
Triclinic, P1Dx = 1.493 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.4817 (5) ÅCell parameters from 3330 reflections
b = 7.5928 (5) Åθ = 1.3–26.8°
c = 15.7908 (10) ŵ = 0.12 mm1
α = 78.673 (3)°T = 293 K
β = 78.404 (3)°Block, colourless
γ = 65.370 (3)°0.25 × 0.15 × 0.10 mm
V = 792.36 (9) Å3
Bruker SMART APEXII area-detector diffractometer3330 independent reflections
Radiation source: fine-focus sealed tube2402 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.031
ω and φ scansθmax = 26.8°, θmin = 1.3°
Absorption correction: multi-scan (SADABS; Bruker, 2008)h = −9→9
Tmin = 0.970, Tmax = 0.988k = −9→9
11539 measured reflectionsl = −19→19
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.047H-atom parameters constrained
wR(F2) = 0.140w = 1/[σ2(Fo2) + (0.062P)2 + 0.2065P] where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max < 0.001
3330 reflectionsΔρmax = 0.22 e Å3
236 parametersΔρmin = −0.31 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.006 (2)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.4888 (3)0.3315 (3)0.37814 (13)0.0588 (5)
H10.51140.28020.43540.071*
C20.6415 (3)0.3567 (3)0.31604 (15)0.0691 (6)
H20.76560.32120.33260.083*
C30.6121 (3)0.4313 (3)0.23273 (14)0.0673 (5)
H30.71680.44390.19250.081*
C40.4239 (3)0.4907 (3)0.20584 (12)0.0543 (5)
C50.3867 (3)0.5717 (3)0.12011 (13)0.0670 (5)
H50.48910.58620.07890.080*
C60.2045 (4)0.6293 (3)0.09616 (14)0.0744 (6)
H60.18300.68290.03900.089*
C70.0489 (3)0.6080 (3)0.15737 (14)0.0699 (6)
H7−0.07590.64830.14060.084*
C80.0783 (3)0.5289 (3)0.24135 (13)0.0578 (5)
H8−0.02650.51580.28140.069*
C90.2666 (3)0.4668 (2)0.26779 (11)0.0474 (4)
C100.3070 (3)0.3827 (2)0.35414 (11)0.0483 (4)
C110.1842 (3)0.2579 (3)0.49334 (11)0.0540 (4)
H11A0.20630.33650.52850.065*
H11B0.29980.13610.48980.065*
C120.0033 (3)0.2197 (2)0.53195 (11)0.0491 (4)
C13−0.1893 (3)0.1278 (2)0.63030 (12)0.0516 (4)
C14−0.2556 (3)0.0518 (3)0.71692 (12)0.0595 (5)
C15−0.1309 (4)−0.0186 (3)0.78032 (14)0.0767 (6)
H15−0.0047−0.01680.76790.092*
C16−0.1951 (6)−0.0916 (4)0.86218 (16)0.1020 (10)
C17−0.3818 (6)−0.0941 (4)0.88135 (19)0.1061 (12)
C18−0.5058 (5)−0.0245 (4)0.8207 (2)0.1034 (11)
H18−0.6323−0.02540.83420.124*
C19−0.4444 (4)0.0477 (3)0.73917 (17)0.0761 (7)
N1−0.1442 (3)0.2435 (2)0.49547 (10)0.0622 (4)
N2−0.2727 (2)0.1818 (2)0.56086 (11)0.0620 (4)
O10.14915 (18)0.35881 (19)0.40929 (8)0.0582 (4)
O2−0.01186 (18)0.14762 (17)0.61719 (7)0.0520 (3)
F1−0.0726 (4)−0.1601 (3)0.92306 (11)0.1607 (9)
F2−0.4342 (4)−0.1687 (3)0.96228 (11)0.1684 (11)
F3−0.5703 (2)0.1171 (3)0.68014 (13)0.1095 (6)
U11U22U33U12U13U23
C10.0581 (11)0.0638 (11)0.0548 (11)−0.0257 (9)−0.0118 (9)0.0004 (9)
C20.0548 (11)0.0827 (14)0.0737 (14)−0.0332 (10)−0.0113 (10)−0.0018 (11)
C30.0564 (11)0.0796 (13)0.0672 (13)−0.0357 (10)0.0033 (10)−0.0038 (10)
C40.0632 (11)0.0516 (9)0.0494 (10)−0.0280 (8)0.0000 (8)−0.0044 (8)
C50.0804 (14)0.0697 (12)0.0523 (11)−0.0389 (11)0.0030 (10)−0.0017 (9)
C60.0996 (18)0.0763 (14)0.0483 (11)−0.0395 (13)−0.0165 (11)0.0081 (10)
C70.0737 (13)0.0743 (13)0.0643 (13)−0.0317 (11)−0.0240 (11)0.0069 (10)
C80.0586 (11)0.0608 (11)0.0557 (11)−0.0285 (9)−0.0075 (9)0.0000 (8)
C90.0538 (10)0.0431 (8)0.0461 (9)−0.0215 (7)−0.0049 (7)−0.0038 (7)
C100.0498 (10)0.0478 (9)0.0468 (10)−0.0212 (7)−0.0020 (8)−0.0047 (7)
C110.0594 (11)0.0543 (10)0.0452 (10)−0.0225 (8)−0.0082 (8)0.0021 (8)
C120.0587 (10)0.0461 (9)0.0404 (9)−0.0205 (8)−0.0072 (8)−0.0006 (7)
C130.0597 (11)0.0440 (9)0.0495 (10)−0.0213 (8)−0.0028 (8)−0.0049 (7)
C140.0797 (13)0.0438 (9)0.0496 (11)−0.0250 (9)0.0047 (9)−0.0061 (8)
C150.1047 (18)0.0658 (12)0.0487 (12)−0.0290 (12)−0.0033 (11)−0.0001 (9)
C160.170 (3)0.0668 (14)0.0494 (13)−0.0327 (17)−0.0085 (17)0.0005 (11)
C170.174 (3)0.0633 (14)0.0662 (17)−0.0576 (18)0.047 (2)−0.0151 (12)
C180.130 (3)0.0742 (16)0.100 (2)−0.0583 (17)0.0498 (19)−0.0246 (15)
C190.0887 (16)0.0575 (12)0.0788 (15)−0.0364 (11)0.0182 (13)−0.0137 (11)
N10.0677 (10)0.0713 (10)0.0480 (9)−0.0315 (8)−0.0122 (8)0.0060 (7)
N20.0668 (10)0.0677 (10)0.0549 (10)−0.0327 (8)−0.0108 (8)0.0020 (8)
O10.0534 (7)0.0692 (8)0.0444 (7)−0.0241 (6)−0.0046 (5)0.0083 (6)
O20.0606 (8)0.0538 (7)0.0410 (7)−0.0243 (6)−0.0080 (5)0.0010 (5)
F10.249 (3)0.1436 (16)0.0596 (10)−0.0549 (17)−0.0400 (13)0.0235 (10)
F20.303 (3)0.1016 (12)0.0759 (11)−0.1005 (16)0.0777 (14)−0.0141 (9)
F30.0853 (10)0.1222 (13)0.1295 (14)−0.0566 (9)0.0005 (10)−0.0139 (11)
C1—C101.361 (3)C11—C121.487 (3)
C1—C21.401 (3)C11—H11A0.9700
C1—H10.9300C11—H11B0.9700
C2—C31.349 (3)C12—N11.277 (2)
C2—H20.9300C12—O21.351 (2)
C3—C41.415 (3)C13—N21.283 (2)
C3—H30.9300C13—O21.368 (2)
C4—C51.404 (3)C13—C141.451 (3)
C4—C91.421 (2)C14—C151.381 (3)
C5—C61.355 (3)C14—C191.398 (3)
C5—H50.9300C15—C161.378 (3)
C6—C71.400 (3)C15—H150.9300
C6—H60.9300C16—F11.340 (4)
C7—C81.364 (3)C16—C171.376 (5)
C7—H70.9300C17—F21.344 (3)
C8—C91.410 (3)C17—C181.344 (5)
C8—H80.9300C18—C191.366 (4)
C9—C101.422 (2)C18—H180.9300
C10—O11.375 (2)C19—F31.334 (3)
C11—O11.411 (2)N1—N21.413 (2)
C10—C1—C2119.51 (18)C12—C11—H11A110.5
C10—C1—H1120.2O1—C11—H11B110.5
C2—C1—H1120.2C12—C11—H11B110.5
C3—C2—C1121.32 (19)H11A—C11—H11B108.7
C3—C2—H2119.3N1—C12—O2113.26 (16)
C1—C2—H2119.3N1—C12—C11129.06 (16)
C2—C3—C4120.79 (18)O2—C12—C11117.67 (15)
C2—C3—H3119.6N2—C13—O2112.38 (16)
C4—C3—H3119.6N2—C13—C14129.71 (19)
C5—C4—C3122.47 (18)O2—C13—C14117.91 (17)
C5—C4—C9118.68 (18)C15—C14—C19118.1 (2)
C3—C4—C9118.85 (18)C15—C14—C13120.0 (2)
C6—C5—C4121.36 (19)C19—C14—C13122.0 (2)
C6—C5—H5119.3C16—C15—C14119.4 (3)
C4—C5—H5119.3C16—C15—H15120.3
C5—C6—C7120.0 (2)C14—C15—H15120.3
C5—C6—H6120.0F1—C16—C17120.4 (3)
C7—C6—H6120.0F1—C16—C15118.9 (3)
C8—C7—C6120.7 (2)C17—C16—C15120.7 (3)
C8—C7—H7119.6F2—C17—C18121.7 (4)
C6—C7—H7119.6F2—C17—C16117.6 (4)
C7—C8—C9120.36 (18)C18—C17—C16120.7 (3)
C7—C8—H8119.8C17—C18—C19119.4 (3)
C9—C8—H8119.8C17—C18—H18120.3
C8—C9—C4118.84 (17)C19—C18—H18120.3
C8—C9—C10123.12 (16)F3—C19—C18118.4 (3)
C4—C9—C10118.04 (16)F3—C19—C14119.9 (2)
C1—C10—O1124.10 (16)C18—C19—C14121.7 (3)
C1—C10—C9121.46 (16)C12—N1—N2105.99 (15)
O1—C10—C9114.45 (15)C13—N2—N1106.01 (15)
O1—C11—C12106.06 (14)C10—O1—C11117.48 (14)
O1—C11—H11A110.5C12—O2—C13102.37 (13)
C10—C1—C2—C30.2 (3)C13—C14—C15—C16−179.59 (18)
C1—C2—C3—C41.4 (3)C14—C15—C16—F1179.8 (2)
C2—C3—C4—C5179.02 (19)C14—C15—C16—C17−0.3 (4)
C2—C3—C4—C9−1.2 (3)F1—C16—C17—F2−0.6 (4)
C3—C4—C5—C6−179.3 (2)C15—C16—C17—F2179.5 (2)
C9—C4—C5—C60.9 (3)F1—C16—C17—C18179.6 (2)
C4—C5—C6—C7−0.2 (3)C15—C16—C17—C18−0.3 (4)
C5—C6—C7—C8−0.3 (3)F2—C17—C18—C19−179.3 (2)
C6—C7—C8—C9−0.1 (3)C16—C17—C18—C190.6 (4)
C7—C8—C9—C40.9 (3)C17—C18—C19—F3−179.6 (2)
C7—C8—C9—C10−179.79 (17)C17—C18—C19—C14−0.2 (4)
C5—C4—C9—C8−1.3 (3)C15—C14—C19—F3179.00 (19)
C3—C4—C9—C8178.98 (17)C13—C14—C19—F3−0.7 (3)
C5—C4—C9—C10179.36 (16)C15—C14—C19—C18−0.4 (3)
C3—C4—C9—C10−0.4 (2)C13—C14—C19—C18179.84 (19)
C2—C1—C10—O1178.07 (17)O2—C12—N1—N2−0.3 (2)
C2—C1—C10—C9−1.9 (3)C11—C12—N1—N2178.92 (17)
C8—C9—C10—C1−177.39 (17)O2—C13—N2—N1−0.1 (2)
C4—C9—C10—C12.0 (2)C14—C13—N2—N1179.94 (17)
C8—C9—C10—O12.7 (2)C12—N1—N2—C130.2 (2)
C4—C9—C10—O1−177.99 (14)C1—C10—O1—C11−6.4 (3)
O1—C11—C12—N19.7 (3)C9—C10—O1—C11173.59 (14)
O1—C11—C12—O2−171.20 (14)C12—C11—O1—C10−169.31 (14)
N2—C13—C14—C15172.59 (19)N1—C12—O2—C130.18 (19)
O2—C13—C14—C15−7.3 (3)C11—C12—O2—C13−179.10 (14)
N2—C13—C14—C19−7.7 (3)N2—C13—O2—C12−0.01 (19)
O2—C13—C14—C19172.39 (16)C14—C13—O2—C12179.92 (14)
C19—C14—C15—C160.7 (3)
D—H···AD—HH···AD···AD—H···A
C1—H1···N2i0.932.613.449 (3)151
C5—H5···F2ii0.932.513.290 (3)141
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
C1H1N2i 0.932.613.449(3)151
C5H5F2ii 0.932.513.290(3)141

Symmetry codes: (i) ; (ii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis, characterization and biological activity studies of 1,3,4-oxadiazole analogs.

Authors:  Ki Bhat; K Sufeera; Sunil Kumar P Chaitanya
Journal:  J Young Pharm       Date:  2011-10

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  3 in total

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