Literature DB >> 25844237

Crystal structure of 2-(3-nitro-phen-yl)-1,3-di-thiane.

Ignez Caracelli1, Julio Zukerman-Schpector2, Hélio A Stefani3, Olga Gozhina3, Edward R T Tiekink4.   

Abstract

In the title compound, C10H11NO2S2, the 1,3-di-thiane ring has a chair conformation with the 1,4-disposed C atoms being above and below the remaining four atoms. The nitro-benzene substituent occupies an equatorial position and forms a dihedral angle of 88.28 (5)° with the least-squares plane through the 1,3-di-thiane ring. The nitro group is twisted out of the plane of the benzene ring to which it is connected, forming a dihedral angle of 10.12 (3)°. In the crystal, mol-ecules aggregate into supra-molecular zigzag chains (glide symmetry along the c axis) via nitro-benzene N-O⋯π [N-O⋯Cg(benzene) = 3.4279 (18) Å and angle at O = 93.95 (11)°] inter-actions. The chains pack with no specific inter-molecular inter-actions between them.

Entities:  

Keywords:  1,3-di­thiane; N—O⋯π inter­actions; conformation; crystal structure

Year:  2015        PMID: 25844237      PMCID: PMC4350730          DOI: 10.1107/S2056989015002844

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For background to substituted 1,3-di­thia­nes, see: Ballesteros et al. (2005 ▸). For nitro–aryl N—O⋯π inter­actions, see: Huang et al. (2008 ▸). For the structure of the closely related 3-bromo-substituted compound, see: Zukerman-Schpector et al. (2015 ▸).

Experimental

Crystal data

C10H11NO2S2 M = 241.32 Monoclinic, a = 10.8547 (2) Å b = 13.2655 (3) Å c = 8.0891 (2) Å β = 109.087 (1)° V = 1100.74 (4) Å3 Z = 4 Mo Kα radiation μ = 0.46 mm−1 T = 293 K 0.49 × 0.46 × 0.21 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▸) T min = 0.687, T max = 0.745 7241 measured reflections 2035 independent reflections 1799 reflections with I > 2σ(I) R int = 0.020

Refinement

R[F 2 > 2σ(F 2)] = 0.031 wR(F 2) = 0.089 S = 1.06 2035 reflections 137 parameters H-atom parameters constrained Δρmax = 0.29 e Å−3 Δρmin = −0.24 e Å−3

Data collection: APEX2 (Bruker, 2009 ▸); cell refinement: SAINT (Bruker, 2009 ▸); data reduction: SAINT; program(s) used to solve structure: SIR2014 (Burla et al., 2015 ▸); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2015 ▸); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▸) and DIAMOND (Brandenburg, 2006 ▸); software used to prepare material for publication: MarvinSketch (ChemAxon, 2010 ▸) and publCIF (Westrip, 2010 ▸). Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S2056989015002844/hg5430sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015002844/hg5430Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015002844/hg5430Isup3.cml Click here for additional data file. . DOI: 10.1107/S2056989015002844/hg5430fig1.tif The mol­ecular structure of the title compound showing the atom-labelling scheme and displacement ellipsoids at the 35% probability level. Click here for additional data file. c . DOI: 10.1107/S2056989015002844/hg5430fig2.tif Upper view: detail of the nitro-N—O⋯π(benzene) inter­action. Lower view: the zigzag supra­molecular chain along the c axis (glide symmetry) mediated by nitro-N—O⋯π(benzene) inter­actions shown as purple dashed lines. Click here for additional data file. b . DOI: 10.1107/S2056989015002844/hg5430fig3.tif A view in projection down the b axis of the unit-cell contents. The nitro-N—O⋯π(benzene) inter­actions are shown as purple dashed lines. CCDC reference: 1048518 Additional supporting information: crystallographic information; 3D view; checkCIF report
C10H11NO2S2F(000) = 504
Mr = 241.32Dx = 1.456 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
a = 10.8547 (2) ÅCell parameters from 4425 reflections
b = 13.2655 (3) Åθ = 2.5–25.4°
c = 8.0891 (2) ŵ = 0.46 mm1
β = 109.087 (1)°T = 293 K
V = 1100.74 (4) Å3Slab, colourless
Z = 40.49 × 0.46 × 0.21 mm
Bruker APEXII CCD diffractometer1799 reflections with I > 2σ(I)
φ and ω scansRint = 0.020
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)θmax = 25.4°, θmin = 2.0°
Tmin = 0.687, Tmax = 0.745h = −13→12
7241 measured reflectionsk = −16→16
2035 independent reflectionsl = −8→9
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.031w = 1/[σ2(Fo2) + (0.0444P)2 + 0.3472P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.089(Δ/σ)max < 0.001
S = 1.06Δρmax = 0.29 e Å3
2035 reflectionsΔρmin = −0.24 e Å3
137 parametersExtinction correction: SHELXL2014 (Sheldrick 2014, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
0 restraintsExtinction coefficient: 0.0192 (17)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
S10.93087 (4)0.75719 (3)0.69969 (5)0.04460 (16)
S20.93019 (4)0.98623 (3)0.69835 (6)0.04646 (16)
O10.54267 (18)0.88063 (13)0.15045 (19)0.0830 (5)
O20.35484 (16)0.85594 (14)0.1765 (2)0.0917 (6)
N10.47188 (18)0.86855 (11)0.2380 (2)0.0608 (5)
C10.86732 (14)0.87164 (10)0.76325 (19)0.0340 (3)
H10.88870.87190.89070.041*
C21.10282 (17)0.96790 (14)0.8068 (2)0.0511 (4)
H2A1.14941.02480.78040.061*
H2B1.11980.96730.93220.061*
C31.15622 (17)0.87200 (13)0.7556 (2)0.0519 (5)
H3A1.13640.87130.62970.062*
H3B1.25030.87200.80850.062*
C41.10278 (17)0.77709 (14)0.8096 (2)0.0503 (4)
H4A1.11850.77960.93470.060*
H4B1.15030.71980.78680.060*
C50.72187 (15)0.87186 (10)0.6807 (2)0.0353 (3)
C60.66533 (16)0.86907 (11)0.4999 (2)0.0403 (4)
H60.71690.86690.42800.048*
C70.53161 (17)0.86960 (11)0.4295 (2)0.0454 (4)
C80.45093 (17)0.87258 (13)0.5303 (3)0.0538 (5)
H80.36070.87220.47900.065*
C90.50821 (18)0.87617 (13)0.7092 (3)0.0539 (5)
H90.45610.87880.78030.065*
C100.64180 (17)0.87591 (11)0.7842 (2)0.0441 (4)
H100.67890.87850.90530.053*
U11U22U33U12U13U23
S10.0499 (3)0.0379 (2)0.0436 (3)0.00382 (16)0.01201 (19)−0.00589 (15)
S20.0441 (3)0.0374 (3)0.0589 (3)−0.00061 (16)0.0181 (2)0.00780 (17)
O10.0889 (12)0.1119 (14)0.0382 (8)0.0027 (9)0.0071 (8)0.0037 (7)
O20.0563 (9)0.1212 (14)0.0696 (10)0.0056 (9)−0.0178 (8)−0.0135 (9)
N10.0629 (11)0.0593 (10)0.0454 (9)0.0066 (7)−0.0023 (8)−0.0033 (7)
C10.0388 (8)0.0344 (8)0.0294 (7)−0.0002 (6)0.0119 (6)−0.0002 (5)
C20.0416 (9)0.0581 (11)0.0532 (10)−0.0114 (8)0.0152 (8)−0.0059 (8)
C30.0368 (8)0.0729 (13)0.0477 (10)0.0044 (8)0.0161 (7)0.0004 (8)
C40.0467 (9)0.0580 (11)0.0433 (9)0.0163 (8)0.0107 (7)0.0050 (7)
C50.0378 (8)0.0338 (8)0.0351 (8)−0.0015 (6)0.0128 (6)0.0003 (5)
C60.0426 (9)0.0438 (9)0.0355 (8)0.0009 (6)0.0140 (7)0.0009 (6)
C70.0456 (9)0.0417 (9)0.0408 (9)−0.0002 (7)0.0032 (7)−0.0022 (6)
C80.0353 (9)0.0542 (11)0.0689 (12)−0.0036 (7)0.0131 (8)−0.0020 (8)
C90.0462 (10)0.0625 (12)0.0608 (11)−0.0065 (8)0.0282 (9)−0.0023 (8)
C100.0472 (9)0.0490 (9)0.0403 (9)−0.0052 (7)0.0201 (7)−0.0006 (7)
S1—C41.8048 (18)C3—H3B0.9700
S1—C11.8102 (14)C4—H4A0.9700
S2—C21.8069 (18)C4—H4B0.9700
S2—C11.8128 (14)C5—C61.389 (2)
O1—N11.214 (2)C5—C101.391 (2)
O2—N11.215 (2)C6—C71.375 (2)
N1—C71.471 (2)C6—H60.9300
C1—C51.500 (2)C7—C81.379 (3)
C1—H10.9800C8—C91.377 (3)
C2—C31.511 (2)C8—H80.9300
C2—H2A0.9700C9—C101.377 (3)
C2—H2B0.9700C9—H90.9300
C3—C41.509 (3)C10—H100.9300
C3—H3A0.9700
C4—S1—C199.55 (8)C3—C4—H4A108.7
C2—S2—C1100.11 (8)S1—C4—H4A108.7
O1—N1—O2123.77 (18)C3—C4—H4B108.7
O1—N1—C7117.90 (17)S1—C4—H4B108.7
O2—N1—C7118.32 (19)H4A—C4—H4B107.6
C5—C1—S1108.59 (10)C6—C5—C10119.13 (15)
C5—C1—S2108.10 (10)C6—C5—C1120.46 (13)
S1—C1—S2113.99 (8)C10—C5—C1120.41 (14)
C5—C1—H1108.7C7—C6—C5118.65 (15)
S1—C1—H1108.7C7—C6—H6120.7
S2—C1—H1108.7C5—C6—H6120.7
C3—C2—S2114.22 (12)C6—C7—C8122.93 (16)
C3—C2—H2A108.7C6—C7—N1118.60 (16)
S2—C2—H2A108.7C8—C7—N1118.46 (16)
C3—C2—H2B108.7C9—C8—C7117.84 (16)
S2—C2—H2B108.7C9—C8—H8121.1
H2A—C2—H2B107.6C7—C8—H8121.1
C4—C3—C2113.89 (15)C10—C9—C8120.77 (16)
C4—C3—H3A108.8C10—C9—H9119.6
C2—C3—H3A108.8C8—C9—H9119.6
C4—C3—H3B108.8C9—C10—C5120.67 (16)
C2—C3—H3B108.8C9—C10—H10119.7
H3A—C3—H3B107.7C5—C10—H10119.7
C3—C4—S1114.37 (12)
C4—S1—C1—C5178.82 (10)C1—C5—C6—C7−179.86 (13)
C4—S1—C1—S258.27 (10)C5—C6—C7—C8−0.1 (2)
C2—S2—C1—C5−178.78 (10)C5—C6—C7—N1178.88 (13)
C2—S2—C1—S1−57.95 (10)O1—N1—C7—C6−9.5 (2)
C1—S2—C2—C357.35 (14)O2—N1—C7—C6170.67 (16)
S2—C2—C3—C4−65.25 (19)O1—N1—C7—C8169.54 (17)
C2—C3—C4—S166.18 (19)O2—N1—C7—C8−10.3 (2)
C1—S1—C4—C3−58.63 (14)C6—C7—C8—C90.7 (2)
S1—C1—C5—C6−60.31 (15)N1—C7—C8—C9−178.35 (15)
S2—C1—C5—C663.82 (15)C7—C8—C9—C10−0.5 (3)
S1—C1—C5—C10120.35 (13)C8—C9—C10—C5−0.1 (2)
S2—C1—C5—C10−115.51 (13)C6—C5—C10—C90.6 (2)
C10—C5—C6—C7−0.5 (2)C1—C5—C10—C9179.98 (14)
  2 in total

1.  Calculated interactions of a nitro group with aromatic rings of crystalline picryl bromide.

Authors:  Lulu Huang; Lou Massa; Jerome Karle
Journal:  Proc Natl Acad Sci U S A       Date:  2008-09-09       Impact factor: 11.205

2.  Crystal structure refinement with SHELXL.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr C Struct Chem       Date:  2015-01-01       Impact factor: 1.172

  2 in total

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