Literature DB >> 25844229

Crystal structure of diethyl 2,2'-[((1E,1'E)-{[(1R,4R)-cyclo-hexane-1,4-di-yl]bis-(aza-nylyl-idene)}bis-(methanylyl-idene))bis-(1H-pyrrole-2,1-di-yl)]di-acetate.

Jasim Alshawi1, Muoayed Yousif1, Karzan H Zangana2, Inigo J Vitorica Yrezabal2, Richard Winpenny2, Mohamad J Al-Jeboori3.   

Abstract

The whole mol-ecule of the title compound, C24H32N4O4, is generated by inversion symmetry. The cyclo-hexane ring adopts a chair conformation and the conformation about the C=N bonds is E. The pyrrole rings have an anti confirmation with respect to the cyclo-hexane moiety and the ethyl acetate groups have extended conformations. In the crystal, mol-ecules are linked by pairs of C-H⋯O hydrogen bonds forming chains, enclosing R 2 (2)(10) ring motifs with inversion symmetry, propagating parallel to the (101) plane.

Entities:  

Keywords:  C—H⋯O hydrogen bonding; Schiff base; bis­pyrrole; crystal structure

Year:  2015        PMID: 25844229      PMCID: PMC4350751          DOI: 10.1107/S2056989015002674

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For general background on the applications of Schiff bases and the use of pyrrole compounds, see: Köse et al. (2015 ▸); Trofimov et al. (2015 ▸). For the synthesis of di­pyrrole Schiff bases ligands, see: Meghdadi et al. (2010 ▸); Munro et al. (2004 ▸). For the synthesis of pyrrole ester precursors, see: Koriatopoulou et al. (2008 ▸); Singh & Pal (2010 ▸). For the preparation of Schiff bases, see: Yang et al. (2004 ▸); Ourari et al. (2013 ▸).

Experimental

Crystal data

C24H32N4O4 M = 440.54 Triclinic, a = 8.5531 (6) Å b = 8.8379 (7) Å c = 9.6492 (9) Å α = 115.166 (9)° β = 92.105 (7)° γ = 113.288 (8)° V = 587.68 (10) Å3 Z = 1 Mo Kα radiation μ = 0.09 mm−1 T = 150 K 0.4 × 0.3 × 0.3 mm

Data collection

Agilent SuperNova (single source at offset, Atlas) diffractometer Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2013 ▸) T min = 0.933, T max = 1.000 4657 measured reflections 2734 independent reflections 1827 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.055 wR(F 2) = 0.124 S = 1.07 2734 reflections 146 parameters H-atom parameters constrained Δρmax = 0.18 e Å−3 Δρmin = −0.25 e Å−3

Data collection: CrysAlis PRO (Agilent, 2013 ▸); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS2014 (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2015 ▸); molecular graphics: PLATON (Spek, 2009 ▸); software used to prepare material for publication: SHELXL2014 and PLATON. Crystal structure: contains datablock(s) Gobal, I. DOI: 10.1107/S2056989015002674/su5080sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015002674/su5080Isup2.hkl Click here for additional data file. . DOI: 10.1107/S2056989015002674/su5080fig1.tif A view of the mol­ecular structure of the title compound. Displacement ellipsoids are drawn at the 50% probability level. Click here for additional data file. b . DOI: 10.1107/S2056989015002674/su5080fig2.tif A view along the b axis of the crystal packing of the title compound. The C—H⋯O hydrogen bonds are drawn as dashed lines (see Table 1 for details; H atom not involved in hydrogen bonding have been omitted for clarity). CCDC reference: 1048163 Additional supporting information: crystallographic information; 3D view; checkCIF report
C24H32N4O4Z = 1
Mr = 440.54F(000) = 236
Triclinic, P1Dx = 1.245 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.5531 (6) ÅCell parameters from 1515 reflections
b = 8.8379 (7) Åθ = 3.3–26.7°
c = 9.6492 (9) ŵ = 0.09 mm1
α = 115.166 (9)°T = 150 K
β = 92.105 (7)°Block, colourless
γ = 113.288 (8)°0.4 × 0.3 × 0.3 mm
V = 587.68 (10) Å3
Agilent SuperNova (single source at offset, Atlas) diffractometer2734 independent reflections
Radiation source: SuperNova (Mo) X-ray Source1827 reflections with I > 2σ(I)
Mirror monochromatorRint = 0.028
Detector resolution: 10.37 pixels mm-1θmax = 29.4°, θmin = 2.9°
ω scansh = −11→11
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2013)k = −10→12
Tmin = 0.933, Tmax = 1.000l = −13→8
4657 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.055H-atom parameters constrained
wR(F2) = 0.124w = 1/[σ2(Fo2) + (0.0363P)2 + 0.1039P] where P = (Fo2 + 2Fc2)/3
S = 1.07(Δ/σ)max < 0.001
2734 reflectionsΔρmax = 0.18 e Å3
146 parametersΔρmin = −0.25 e Å3
0 restraints
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
O130.46898 (16)0.46998 (17)0.19574 (15)0.0317 (3)
O160.63475 (17)0.71083 (17)0.43494 (15)0.0338 (4)
N10.67517 (19)0.9650 (2)0.32094 (18)0.0274 (4)
N70.87176 (19)0.7539 (2)0.17968 (18)0.0313 (4)
C120.5599 (2)0.6517 (3)0.3013 (2)0.0270 (4)
C60.9477 (2)0.9265 (3)0.2821 (2)0.0297 (5)
H61.06950.98540.31630.036*
C50.8559 (2)1.0361 (2)0.3483 (2)0.0275 (4)
C100.9066 (2)0.4733 (2)0.1181 (2)0.0311 (5)
H10A0.78510.39920.05750.037*
H10B0.90870.49350.22520.037*
C110.5474 (2)0.7689 (2)0.2290 (2)0.0279 (4)
H11A0.56530.71920.12330.033*
H11B0.43020.75970.22010.033*
C20.6355 (3)1.1083 (3)0.4039 (2)0.0317 (5)
H20.52291.09700.40610.038*
C91.0097 (2)0.3654 (3)0.0461 (2)0.0307 (5)
H9A0.95450.24380.04200.037*
H9B1.12800.43340.11270.037*
C80.9819 (2)0.6620 (2)0.1201 (2)0.0304 (5)
H81.10070.74120.18970.036*
C40.9269 (3)1.2260 (3)0.4484 (2)0.0340 (5)
H41.04591.30980.48640.041*
C30.7880 (3)1.2712 (3)0.4833 (2)0.0377 (5)
H30.79801.38980.54830.045*
C140.4577 (3)0.3383 (3)0.2513 (2)0.0400 (5)
H14A0.40250.35760.33920.048*
H14B0.57430.35620.28690.048*
C150.3512 (3)0.1451 (3)0.1175 (3)0.0544 (7)
H15A0.41110.12420.03420.082*
H15B0.23880.13140.07870.082*
H15C0.33490.05510.15340.082*
U11U22U33U12U13U23
O130.0352 (8)0.0259 (7)0.0293 (8)0.0091 (6)0.0017 (6)0.0141 (6)
O160.0378 (8)0.0349 (7)0.0245 (8)0.0133 (6)0.0036 (6)0.0140 (6)
N10.0295 (8)0.0254 (8)0.0269 (9)0.0133 (7)0.0060 (6)0.0114 (7)
N70.0275 (8)0.0302 (8)0.0281 (9)0.0150 (7)0.0050 (7)0.0054 (7)
C120.0238 (10)0.0303 (10)0.0253 (10)0.0116 (8)0.0079 (8)0.0124 (8)
C60.0255 (10)0.0337 (10)0.0262 (10)0.0119 (9)0.0061 (8)0.0126 (9)
C50.0291 (10)0.0282 (10)0.0231 (10)0.0120 (8)0.0062 (8)0.0115 (8)
C100.0250 (10)0.0340 (10)0.0249 (10)0.0115 (9)0.0054 (8)0.0083 (8)
C110.0250 (10)0.0305 (10)0.0265 (10)0.0120 (8)0.0052 (8)0.0129 (8)
C20.0412 (11)0.0355 (10)0.0299 (11)0.0252 (10)0.0127 (9)0.0178 (9)
C90.0259 (10)0.0280 (10)0.0300 (11)0.0104 (8)0.0039 (8)0.0089 (8)
C80.0204 (9)0.0302 (10)0.0293 (11)0.0116 (8)0.0034 (7)0.0050 (8)
C40.0361 (11)0.0269 (10)0.0308 (11)0.0105 (9)0.0062 (9)0.0106 (9)
C30.0519 (13)0.0269 (10)0.0341 (12)0.0207 (10)0.0109 (10)0.0118 (9)
C140.0480 (13)0.0336 (11)0.0396 (13)0.0130 (10)0.0065 (10)0.0240 (10)
C150.0690 (16)0.0316 (11)0.0498 (15)0.0101 (12)−0.0021 (12)0.0217 (11)
O13—C121.336 (2)C6—C51.441 (2)
O13—C141.448 (2)C5—C41.375 (2)
O16—C121.203 (2)C10—C91.522 (2)
N1—C51.384 (2)C10—C81.522 (3)
N1—C111.452 (2)C2—C31.365 (3)
N1—C21.363 (2)C9—C8i1.526 (3)
N7—C61.270 (2)C8—C9i1.526 (3)
N7—C81.458 (2)C4—C31.405 (3)
C12—C111.506 (3)C14—C151.490 (3)
C12—O13—C14116.15 (15)C4—C5—C6127.83 (17)
C5—N1—C11126.32 (15)C8—C10—C9111.74 (14)
C2—N1—C5108.70 (15)N1—C11—C12112.58 (15)
C2—N1—C11124.84 (15)N1—C2—C3108.91 (17)
C6—N7—C8117.71 (15)C10—C9—C8i111.47 (17)
O13—C12—C11109.47 (16)N7—C8—C10109.64 (14)
O16—C12—O13124.75 (19)N7—C8—C9i109.49 (17)
O16—C12—C11125.74 (17)C10—C8—C9i110.20 (15)
N7—C6—C5123.74 (17)C5—C4—C3107.99 (18)
N1—C5—C6124.91 (15)C2—C3—C4107.14 (17)
C4—C5—N1107.27 (16)O13—C14—C15107.88 (18)
O13—C12—C11—N1−166.07 (14)C11—N1—C5—C63.5 (3)
O16—C12—C11—N116.3 (3)C11—N1—C5—C4−176.36 (17)
N1—C5—C4—C30.4 (2)C11—N1—C2—C3176.43 (17)
N1—C2—C3—C4−0.3 (2)C2—N1—C5—C6179.33 (19)
N7—C6—C5—N16.4 (3)C2—N1—C5—C4−0.6 (2)
N7—C6—C5—C4−173.7 (2)C2—N1—C11—C12−110.7 (2)
C12—O13—C14—C15179.68 (16)C9—C10—C8—N7176.06 (15)
C6—N7—C8—C10134.27 (18)C9—C10—C8—C9i55.5 (2)
C6—N7—C8—C9i−104.71 (19)C8—N7—C6—C5178.46 (18)
C6—C5—C4—C3−179.5 (2)C8—C10—C9—C8i−56.2 (2)
C5—N1—C11—C1264.5 (2)C14—O13—C12—O162.0 (3)
C5—N1—C2—C30.6 (2)C14—O13—C12—C11−175.70 (15)
C5—C4—C3—C20.0 (2)
D—H···AD—HH···AD···AD—H···A
C14—H14A···O16ii0.972.503.317 (3)142
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
C14H14AO16i 0.972.503.317(3)142

Symmetry code: (i) .

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