Literature DB >> 25844227

Crystal structure of pseudoguainolide.

Noureddine Beghidja1, Samir Benayache1, Fadila Benayache1, David W Knight2, Benson M Kariuki2.   

Abstract

The lactone ring in the title mol-ecule, C15H22O3 (systematic name: 3,4a,8-tri-methyl-dodeca-hydro-azuleno[6,5-b]furan-2,5-dione), assumes an envelope conformation with the methine C atom adjacent to the the methine C atom carrying the methyl substituent being the flap atom. The other five-membered ring adopts a twisted conformation with the twist being about the methine-methyl-ene C-C bond. The seven-membered ring is based on a twisted boat conformation. No specific inter-actions are noted in the the crystal packing.

Entities:  

Keywords:  crystal structure; inula graveolens; plant extract

Year:  2015        PMID: 25844227      PMCID: PMC4350757          DOI: 10.1107/S2056989015002510

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For background to inula graveolens, see: Chiappini & Fardella (1980 ▸); Rustaiyan et al. (1987 ▸). For related structures, see: Herz et al. (1982 ▸); Schmidt et al. (1996 ▸); Wu et al. (2012 ▸); Billodeaux et al. (2014 ▸).

Experimental

Crystal data

C15H22O3 M = 250.33 Orthorhombic, a = 7.4320 (3) Å b = 11.9278 (3) Å c = 15.3152 (6) Å V = 1357.65 (8) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 150 K 0.20 × 0.20 × 0.04 mm

Data collection

Nonius KappaCCD diffractometer Absorption correction: multi-scan (DENZO/SCALEPACK; Otwinowski & Minor, 1997 ▸) T min = 0.984, T max = 0.997 9382 measured reflections 3098 independent reflections 2533 reflections with I > 2σ(I) R int = 0.041

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.107 S = 1.08 3098 reflections 166 parameters H-atom parameters constrained Δρmax = 0.15 e Å−3 Δρmin = −0.16 e Å−3

Data collection: COLLECT (Nonius, 2000 ▸); cell refinement: SCALEPACK (Otwinowski & Minor, 1997 ▸); data reduction: DENZO (Otwinowski & Minor, 1997 ▸) and SCALEPACK; program(s) used to solve structure: SIR92 (Altomare et al., 1999 ▸); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▸); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▸); software used to prepare material for publication: WinGX (Farrugia, 2012 ▸). Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S2056989015002510/tk5358sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015002510/tk5358Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015002510/tk5358Isup3.cml Click here for additional data file. . DOI: 10.1107/S2056989015002510/tk5358fig1.tif A mol­ecule showing atom labels and 50% probability displacement ellipsoids for non-H atoms. CCDC reference: 1047797 Additional supporting information: crystallographic information; 3D view; checkCIF report
C15H22O3Dx = 1.225 Mg m3
Mr = 250.33Mo Kα radiation, λ = 0.71073 Å
Orthorhombic, P212121Cell parameters from 3098 reflections
a = 7.4320 (3) Åθ = 3.1–27.5°
b = 11.9278 (3) ŵ = 0.08 mm1
c = 15.3152 (6) ÅT = 150 K
V = 1357.65 (8) Å3Plate, colourless
Z = 40.20 × 0.20 × 0.04 mm
F(000) = 544
Nonius KappaCCD diffractometer3098 independent reflections
Radiation source: fine-focus sealed tube2533 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.041
CCD slices, ω and φ scansθmax = 27.5°, θmin = 3.1°
Absorption correction: multi-scan (DENZO/SCALEPACK; Otwinowski & Minor, 1997)h = −9→9
Tmin = 0.984, Tmax = 0.997k = −15→15
9382 measured reflectionsl = −19→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.047Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.107H-atom parameters constrained
S = 1.08w = 1/[σ2(Fo2) + (0.0453P)2 + 0.2031P] where P = (Fo2 + 2Fc2)/3
3098 reflections(Δ/σ)max < 0.001
166 parametersΔρmax = 0.15 e Å3
0 restraintsΔρmin = −0.16 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.8136 (2)0.24699 (16)0.52812 (12)0.0383 (4)
C20.8423 (3)0.16380 (15)0.45546 (12)0.0407 (4)
H20.97220.15030.45220.049*
C30.7918 (2)0.22980 (13)0.37360 (11)0.0318 (4)
H30.66200.22200.36420.038*
C40.8307 (2)0.35109 (14)0.40005 (11)0.0338 (4)
H40.95520.37030.38520.041*
C50.8884 (2)0.19024 (14)0.29170 (12)0.0346 (4)
H5A0.83860.11830.27480.041*
H5B1.01420.17850.30600.041*
C60.8781 (2)0.26974 (15)0.21218 (12)0.0371 (4)
C70.7099 (3)0.34762 (15)0.20872 (12)0.0388 (4)
H70.60650.30390.22920.047*
C80.7176 (3)0.45618 (14)0.26350 (13)0.0429 (5)
H80.83260.49320.25130.052*
C90.7050 (3)0.43722 (14)0.36244 (12)0.0396 (4)
H9A0.72760.50810.39140.048*
H9B0.58270.41520.37630.048*
C100.8618 (3)0.20169 (18)0.12824 (14)0.0495 (5)
C110.7283 (4)0.25562 (19)0.06728 (14)0.0630 (6)
H11A0.62110.20990.06170.076*
H11B0.78050.26650.00980.076*
C120.6842 (3)0.36830 (18)0.10993 (14)0.0583 (6)
H12A0.56130.39050.09730.070*
H12B0.76510.42640.08930.070*
C130.7564 (3)0.05319 (14)0.47094 (13)0.0453 (5)
H13A0.62820.06230.47370.068*
H13B0.79920.02260.52510.068*
H13C0.78640.00320.42400.068*
C141.0567 (3)0.33493 (19)0.20250 (15)0.0519 (5)
H14A1.04880.38460.15330.078*
H14B1.15360.28300.19370.078*
H14C1.07860.37770.25450.078*
C150.5664 (3)0.53701 (18)0.23775 (17)0.0650 (7)
H15A0.56700.60040.27640.098*
H15B0.45260.49920.24190.098*
H15C0.58470.56200.17880.098*
O10.79726 (18)0.22938 (12)0.60507 (9)0.0478 (3)
O20.80792 (16)0.35200 (10)0.49559 (7)0.0390 (3)
O30.9465 (2)0.11791 (15)0.11224 (11)0.0721 (5)
U11U22U33U12U13U23
C10.0265 (8)0.0451 (10)0.0433 (11)−0.0014 (8)−0.0003 (8)0.0008 (8)
C20.0416 (10)0.0404 (9)0.0400 (10)−0.0014 (8)0.0015 (8)0.0040 (8)
C30.0265 (8)0.0298 (8)0.0392 (9)−0.0018 (7)0.0004 (7)0.0008 (7)
C40.0296 (9)0.0335 (8)0.0384 (9)−0.0040 (7)0.0040 (7)−0.0020 (7)
C50.0314 (9)0.0331 (9)0.0393 (10)0.0025 (7)−0.0013 (8)−0.0011 (7)
C60.0344 (9)0.0381 (9)0.0387 (10)−0.0011 (8)0.0020 (8)0.0015 (8)
C70.0381 (9)0.0357 (8)0.0426 (10)0.0007 (8)−0.0058 (8)0.0050 (8)
C80.0453 (11)0.0301 (8)0.0534 (12)0.0008 (9)0.0005 (9)0.0064 (8)
C90.0373 (10)0.0303 (8)0.0512 (11)−0.0012 (8)0.0023 (9)−0.0031 (7)
C100.0526 (12)0.0532 (12)0.0426 (12)0.0015 (10)−0.0019 (9)−0.0027 (9)
C110.0807 (17)0.0660 (14)0.0424 (12)0.0121 (14)−0.0134 (12)−0.0037 (10)
C120.0731 (15)0.0544 (12)0.0472 (12)0.0092 (12)−0.0115 (12)0.0079 (9)
C130.0473 (11)0.0383 (10)0.0502 (12)0.0076 (9)0.0064 (9)0.0056 (8)
C140.0441 (11)0.0595 (12)0.0522 (13)−0.0096 (10)0.0101 (10)0.0073 (10)
C150.0772 (17)0.0419 (11)0.0761 (17)0.0178 (12)−0.0123 (14)0.0068 (11)
O10.0432 (8)0.0636 (8)0.0367 (8)−0.0003 (7)0.0028 (6)0.0023 (6)
O20.0380 (7)0.0401 (7)0.0388 (7)−0.0038 (6)0.0016 (6)−0.0055 (5)
O30.0840 (12)0.0763 (11)0.0560 (10)0.0307 (10)−0.0134 (9)−0.0248 (9)
C1—O11.203 (2)C8—C151.532 (3)
C1—O21.349 (2)C8—C91.535 (3)
C1—C21.506 (3)C8—H80.9800
C2—C131.485 (2)C9—H9A0.9700
C2—C31.527 (2)C9—H9B0.9700
C2—H20.9800C10—O31.206 (2)
C3—C51.520 (2)C10—C111.507 (3)
C3—C41.530 (2)C11—C121.530 (3)
C3—H30.9800C11—H11A0.9700
C4—O21.473 (2)C11—H11B0.9700
C4—C91.503 (2)C12—H12A0.9700
C4—H40.9800C12—H12B0.9700
C5—C61.545 (3)C13—H13A0.9600
C5—H5A0.9700C13—H13B0.9600
C5—H5B0.9700C13—H13C0.9600
C6—C101.525 (3)C14—H14A0.9600
C6—C141.546 (3)C14—H14B0.9600
C6—C71.558 (3)C14—H14C0.9600
C7—C81.544 (3)C15—H15A0.9600
C7—C121.545 (3)C15—H15B0.9600
C7—H70.9800C15—H15C0.9600
O1—C1—O2121.39 (17)C9—C8—H8107.9
O1—C1—C2128.53 (18)C7—C8—H8107.9
O2—C1—C2110.08 (15)C4—C9—C8116.18 (15)
C13—C2—C1114.00 (15)C4—C9—H9A108.2
C13—C2—C3118.92 (16)C8—C9—H9A108.2
C1—C2—C3103.43 (14)C4—C9—H9B108.2
C13—C2—H2106.6C8—C9—H9B108.2
C1—C2—H2106.6H9A—C9—H9B107.4
C3—C2—H2106.6O3—C10—C11124.8 (2)
C5—C3—C2113.67 (14)O3—C10—C6124.83 (19)
C5—C3—C4115.01 (14)C11—C10—C6110.31 (17)
C2—C3—C4102.93 (13)C10—C11—C12104.58 (18)
C5—C3—H3108.3C10—C11—H11A110.8
C2—C3—H3108.3C12—C11—H11A110.8
C4—C3—H3108.3C10—C11—H11B110.8
O2—C4—C9107.71 (13)C12—C11—H11B110.8
O2—C4—C3104.38 (13)H11A—C11—H11B108.9
C9—C4—C3115.32 (15)C11—C12—C7104.55 (16)
O2—C4—H4109.7C11—C12—H12A110.8
C9—C4—H4109.7C7—C12—H12A110.8
C3—C4—H4109.7C11—C12—H12B110.8
C3—C5—C6115.87 (13)C7—C12—H12B110.8
C3—C5—H5A108.3H12A—C12—H12B108.9
C6—C5—H5A108.3C2—C13—H13A109.5
C3—C5—H5B108.3C2—C13—H13B109.5
C6—C5—H5B108.3H13A—C13—H13B109.5
H5A—C5—H5B107.4C2—C13—H13C109.5
C10—C6—C5109.98 (14)H13A—C13—H13C109.5
C10—C6—C14104.76 (16)H13B—C13—H13C109.5
C5—C6—C14109.96 (15)C6—C14—H14A109.5
C10—C6—C7103.01 (15)C6—C14—H14B109.5
C5—C6—C7115.63 (14)H14A—C14—H14B109.5
C14—C6—C7112.70 (14)C6—C14—H14C109.5
C8—C7—C12113.76 (15)H14A—C14—H14C109.5
C8—C7—C6116.85 (15)H14B—C14—H14C109.5
C12—C7—C6103.16 (15)C8—C15—H15A109.5
C8—C7—H7107.5C8—C15—H15B109.5
C12—C7—H7107.5H15A—C15—H15B109.5
C6—C7—H7107.5C8—C15—H15C109.5
C15—C8—C9107.59 (17)H15A—C15—H15C109.5
C15—C8—C7111.13 (17)H15B—C15—H15C109.5
C9—C8—C7114.24 (14)C1—O2—C4110.89 (13)
C15—C8—H8107.9
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