Literature DB >> 25844217

Crystal structure of rac-3-hy-droxy-2-(p-tol-yl)-2,3,3a,4,7,7a-hexa-hydro-1H-4,7-methano-isoindol-1-one.

Mehmet Aslantaş1, Cumali Çelik2, Ömer Çelik3, Arzu Karayel4.   

Abstract

In the title compound, C16H17NO2, the cyclo-hexene ring adopts a boat conformation, and the five-membered rings have envelope conformations with the bridging atom as the flap. Their mean planes are oriented at a dihedral angle of 86.51 (7)°. The mol-ecular structure is stabilized by a short intra-molecular C-H⋯O contact. In the crystal, mol-ecules are linked by O-H⋯O hydrogen bonds forming chains propagating along [100]. The chains are linked by C-H⋯π inter-actions, forming slabs parallel to (001).

Entities:  

Keywords:  C—H⋯π inter­actions; O—H⋯O hydrogen bonds; crystal structure; methano­isoindol-1-one; methano­iso­indole-1,3-dione

Year:  2015        PMID: 25844217      PMCID: PMC4350749          DOI: 10.1107/S2056989015001942

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For medical and pharmaceutical applications of chiral tricyclic compounds, see: Abel et al. (1996 ▸); Salvati et al. (2005 ▸). For the synthesis of the starting reagent, 2-(p-tol­yl)-3a,4,7,7a-tetra­hydro-1H-4,7-methano­iso­indole-1,3(2H)-dione, see: Andrade & Evilazio (2004 ▸). For the reduction reaction used to synthesise the title compound, see: Hubert et al. (1975 ▸). For the crystal structure of a similar compound, see: Takebayashi et al. (2010 ▸).

Experimental

Crystal data

C16H17NO2 M = 255.31 Monoclinic, a = 6.5067 (2) Å b = 9.7385 (2) Å c = 21.0780 (5) Å β = 97.154 (1)° V = 1325.22 (6) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 296 K 0.45 × 0.25 × 0.15 mm

Data collection

Bruker APEXII diffractometer Absorption correction: multi-scan (Blessing, 1995 ▸) T min = 0.963, T max = 0.988 28760 measured reflections 5019 independent reflections 3930 reflections with I > 2σ(I) R int = 0.023

Refinement

R[F 2 > 2σ(F 2)] = 0.063 wR(F 2) = 0.180 S = 1.09 5019 reflections 180 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.40 e Å−3 Δρmin = −0.38 e Å−3

Data collection: APEX2 (Bruker, 2007 ▸); cell refinement: SAINT (Bruker, 2007 ▸); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL97 (Sheldrick, 2015 ▸); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▸); software used to prepare material for publication: WinGX publication routines (Farrugia, 2012 ▸). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S2056989015001942/su5074sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015001942/su5074Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015001942/su5074Isup3.cml Click here for additional data file. . DOI: 10.1107/S2056989015001942/su5074fig1.tif The mol­ecular structure of the title compound, with atom labelling. Displacement ellipsoids are drawn at the 30% probability level. Click here for additional data file. b . DOI: 10.1107/S2056989015001942/su5074fig2.tif A partial view along the b axis of the crystal packing of the title compound. Dashed lines indicate the O—H⋯O hydrogen bonds (see Table 1 for details). CCDC reference: 1046290 Additional supporting information: crystallographic information; 3D view; checkCIF report
C16H17NO2F(000) = 544
Mr = 255.31Dx = 1.280 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 5019 reflections
a = 6.5067 (2) Åθ = 3.6–33.2°
b = 9.7385 (2) ŵ = 0.08 mm1
c = 21.0780 (5) ÅT = 296 K
β = 97.154 (1)°Prism, colourless
V = 1325.22 (6) Å30.45 × 0.25 × 0.15 mm
Z = 4
Bruker APEXII diffractometer5019 independent reflections
Radiation source: fine-focus sealed tube3930 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.023
φ and ω scansθmax = 33.2°, θmin = 3.6°
Absorption correction: multi-scan (Blessing, 1995)h = −5→9
Tmin = 0.963, Tmax = 0.988k = −14→15
28760 measured reflectionsl = −32→32
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.063Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.180H atoms treated by a mixture of independent and constrained refinement
S = 1.09w = 1/[σ2(Fo2) + (0.0762P)2 + 0.4345P] where P = (Fo2 + 2Fc2)/3
5019 reflections(Δ/σ)max < 0.001
180 parametersΔρmax = 0.40 e Å3
0 restraintsΔρmin = −0.38 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.45122 (14)1.12217 (12)0.27036 (6)0.0443 (3)
H20.52561.09050.30110.066*
O2−0.18121 (15)0.99108 (14)0.30186 (6)0.0498 (3)
C16−0.0698 (3)1.0387 (2)0.09543 (8)0.0528 (4)
C10.4966 (4)0.7713 (3)0.53749 (9)0.0695 (6)
H1A0.40640.79430.56860.104*
H1B0.63070.81100.54980.104*
H1C0.50940.67330.53500.104*
H16A−0.073 (3)1.138 (2)0.0867 (10)0.057 (6)*
H16B−0.110 (4)0.990 (2)0.0570 (12)0.066 (6)*
N10.16608 (15)0.98524 (11)0.29178 (5)0.0303 (2)
C110.30916 (17)1.02207 (13)0.24528 (6)0.0323 (2)
H110.38250.94020.23300.039*
C50.24201 (17)0.92979 (12)0.35282 (6)0.0303 (2)
C8−0.03527 (18)1.01463 (13)0.27142 (7)0.0337 (2)
C9−0.05367 (19)1.07927 (14)0.20645 (7)0.0363 (3)
H9−0.10681.17330.20750.044*
C100.16740 (19)1.07774 (14)0.18773 (6)0.0351 (3)
H100.20961.17100.17770.042*
C60.4272 (2)0.85725 (15)0.36000 (7)0.0387 (3)
H60.49730.84190.32480.046*
C20.4079 (2)0.82658 (16)0.47322 (7)0.0440 (3)
C70.5078 (2)0.80753 (17)0.41974 (7)0.0455 (3)
H70.63270.76000.42390.055*
C12−0.1801 (2)0.99380 (17)0.15201 (8)0.0470 (3)
H12−0.33071.00660.14700.056*
C150.1436 (3)0.98780 (17)0.12617 (7)0.0448 (3)
H150.25630.99440.09950.054*
C40.1392 (2)0.94992 (18)0.40597 (7)0.0459 (3)
H40.01480.99810.40210.055*
C13−0.1047 (3)0.84754 (17)0.16019 (8)0.0530 (4)
H13−0.17910.77340.17330.064*
C30.2228 (3)0.8979 (2)0.46493 (8)0.0534 (4)
H30.15170.91150.50010.064*
C140.0870 (3)0.84423 (17)0.14533 (8)0.0520 (4)
H140.17200.76720.14650.062*
U11U22U33U12U13U23
O10.0241 (4)0.0503 (6)0.0575 (6)−0.0066 (4)0.0005 (4)0.0026 (5)
O20.0203 (4)0.0751 (8)0.0549 (6)0.0010 (4)0.0079 (4)0.0096 (5)
C160.0568 (9)0.0558 (9)0.0421 (8)−0.0040 (8)−0.0091 (7)0.0114 (7)
C10.0762 (14)0.0834 (14)0.0453 (9)−0.0020 (11)−0.0064 (9)0.0202 (9)
N10.0193 (4)0.0366 (5)0.0347 (5)0.0025 (3)0.0030 (3)0.0021 (4)
C110.0218 (4)0.0375 (6)0.0380 (6)0.0015 (4)0.0058 (4)0.0020 (5)
C50.0244 (5)0.0332 (5)0.0328 (5)0.0007 (4)0.0022 (4)−0.0013 (4)
C80.0204 (4)0.0377 (6)0.0424 (6)0.0021 (4)0.0019 (4)0.0008 (5)
C90.0254 (5)0.0377 (6)0.0444 (7)0.0034 (4)−0.0011 (4)0.0061 (5)
C100.0300 (5)0.0356 (6)0.0395 (6)−0.0011 (4)0.0037 (4)0.0071 (5)
C60.0287 (5)0.0496 (7)0.0379 (6)0.0092 (5)0.0050 (5)0.0037 (5)
C20.0466 (7)0.0473 (8)0.0361 (6)−0.0043 (6)−0.0026 (5)0.0045 (5)
C70.0358 (6)0.0540 (8)0.0450 (7)0.0090 (6)−0.0013 (5)0.0087 (6)
C120.0351 (6)0.0562 (9)0.0464 (8)−0.0055 (6)−0.0089 (6)0.0091 (6)
C150.0477 (8)0.0496 (8)0.0372 (7)0.0010 (6)0.0063 (6)0.0052 (6)
C40.0422 (7)0.0590 (9)0.0377 (7)0.0157 (6)0.0093 (5)−0.0018 (6)
C130.0641 (10)0.0452 (8)0.0459 (8)−0.0178 (7)−0.0079 (7)0.0030 (6)
C30.0587 (9)0.0672 (10)0.0358 (7)0.0103 (8)0.0121 (6)−0.0004 (7)
C140.0711 (11)0.0396 (7)0.0436 (8)0.0024 (7)−0.0003 (7)−0.0026 (6)
O1—C111.4008 (16)C9—C121.566 (2)
O1—H20.8200C9—H90.9800
O2—C81.2320 (16)C10—C151.557 (2)
C16—C121.531 (2)C10—H100.9800
C16—C151.539 (2)C6—C71.3893 (19)
C16—H16A0.99 (2)C6—H60.9300
C16—H16B0.95 (2)C2—C71.382 (2)
C1—C21.505 (2)C2—C31.383 (2)
C1—H1A0.9600C7—H70.9300
C1—H1B0.9600C12—C131.509 (3)
C1—H1C0.9600C12—H120.9800
N1—C81.3574 (14)C15—C141.513 (2)
N1—C51.4256 (16)C15—H150.9800
N1—C111.4776 (15)C4—C31.389 (2)
C11—C101.5290 (18)C4—H40.9300
C11—H110.9800C13—C141.324 (3)
C5—C41.3884 (18)C13—H130.9300
C5—C61.3885 (17)C3—H30.9300
C8—C91.4984 (19)C14—H140.9300
C9—C101.5383 (18)
C11—O1—H2109.5C11—C10—H10110.0
C12—C16—C1593.78 (12)C9—C10—H10110.0
C12—C16—H16A115.2 (12)C15—C10—H10110.0
C15—C16—H16A113.0 (13)C5—C6—C7120.04 (13)
C12—C16—H16B114.7 (15)C5—C6—H6120.0
C15—C16—H16B109.9 (15)C7—C6—H6120.0
H16A—C16—H16B109.4 (19)C7—C2—C3117.07 (13)
C2—C1—H1A109.5C7—C2—C1121.32 (16)
C2—C1—H1B109.5C3—C2—C1121.61 (16)
H1A—C1—H1B109.5C2—C7—C6121.98 (13)
C2—C1—H1C109.5C2—C7—H7119.0
H1A—C1—H1C109.5C6—C7—H7119.0
H1B—C1—H1C109.5C13—C12—C16100.44 (15)
C8—N1—C5125.28 (10)C13—C12—C9106.51 (11)
C8—N1—C11113.71 (10)C16—C12—C999.46 (12)
C5—N1—C11120.96 (9)C13—C12—H12116.0
O1—C11—N1111.06 (11)C16—C12—H12116.0
O1—C11—C10110.93 (11)C9—C12—H12116.0
N1—C11—C10104.17 (9)C14—C15—C1699.98 (14)
O1—C11—H11110.2C14—C15—C10107.43 (12)
N1—C11—H11110.2C16—C15—C1099.24 (13)
C10—C11—H11110.2C14—C15—H15115.9
C4—C5—C6118.85 (12)C16—C15—H15115.9
C4—C5—N1121.80 (11)C10—C15—H15115.9
C6—C5—N1119.32 (11)C5—C4—C3119.75 (14)
O2—C8—N1124.90 (13)C5—C4—H4120.1
O2—C8—C9125.12 (11)C3—C4—H4120.1
N1—C8—C9109.98 (11)C14—C13—C12107.37 (14)
C8—C9—C10105.05 (10)C14—C13—H13126.3
C8—C9—C12114.92 (11)C12—C13—H13126.3
C10—C9—C12103.28 (12)C2—C3—C4122.30 (14)
C8—C9—H9111.0C2—C3—H3118.9
C10—C9—H9111.0C4—C3—H3118.9
C12—C9—H9111.0C13—C14—C15107.95 (15)
C11—C10—C9106.91 (10)C13—C14—H14126.0
C11—C10—C15116.70 (11)C15—C14—H14126.0
C9—C10—C15102.71 (11)
C8—N1—C11—O1117.43 (12)C3—C2—C7—C6−0.1 (3)
C5—N1—C11—O1−60.01 (14)C1—C2—C7—C6179.60 (17)
C8—N1—C11—C10−2.04 (14)C5—C6—C7—C20.7 (2)
C5—N1—C11—C10−179.48 (11)C15—C16—C12—C13−50.25 (14)
C8—N1—C5—C4−26.3 (2)C15—C16—C12—C958.64 (14)
C11—N1—C5—C4150.86 (14)C8—C9—C12—C13−45.60 (17)
C8—N1—C5—C6155.78 (13)C10—C9—C12—C1368.21 (15)
C11—N1—C5—C6−27.09 (17)C8—C9—C12—C16−149.55 (12)
C5—N1—C8—O2−3.7 (2)C10—C9—C12—C16−35.73 (14)
C11—N1—C8—O2178.96 (13)C12—C16—C15—C1449.62 (15)
C5—N1—C8—C9176.52 (11)C12—C16—C15—C10−60.06 (14)
C11—N1—C8—C9−0.79 (15)C11—C10—C15—C1451.45 (17)
O2—C8—C9—C10−176.50 (14)C9—C10—C15—C14−65.11 (15)
N1—C8—C9—C103.26 (15)C11—C10—C15—C16155.05 (12)
O2—C8—C9—C12−63.72 (19)C9—C10—C15—C1638.49 (13)
N1—C8—C9—C12116.04 (13)C6—C5—C4—C30.1 (2)
O1—C11—C10—C9−115.65 (11)N1—C5—C4—C3−177.82 (15)
N1—C11—C10—C93.91 (13)C16—C12—C13—C1433.93 (16)
O1—C11—C10—C15130.13 (12)C9—C12—C13—C14−69.31 (17)
N1—C11—C10—C15−110.31 (12)C7—C2—C3—C4−0.6 (3)
C8—C9—C10—C11−4.38 (14)C1—C2—C3—C4179.80 (19)
C12—C9—C10—C11−125.16 (11)C5—C4—C3—C20.5 (3)
C8—C9—C10—C15118.98 (12)C12—C13—C14—C15−0.61 (18)
C12—C9—C10—C15−1.79 (13)C16—C15—C14—C13−32.66 (17)
C4—C5—C6—C7−0.7 (2)C10—C15—C14—C1370.41 (17)
N1—C5—C6—C7177.28 (13)
D—H···AD—HH···AD···AD—H···A
C4—H4···O20.932.332.860 (2)116
O1—H2···O2i0.822.142.7194 (15)128
C13—H13···Cg1ii0.932.943.6903 (18)139
C16—H16A···Cg4iii0.99 (2)2.86 (2)3.692 (2)143.4 (15)
Table 1

Hydrogen-bond geometry (, )

Cg1 and Cg4 are the centroids of the N1/C8C11 and C2C7 rings, respectively.

DHA DHHA D A DHA
C4H4O20.932.332.860(2)116
O1H2O2i 0.822.142.7194(15)128
C13H13Cg1ii 0.932.943.6903(18)139
C16H16A Cg4iii 0.99(2)2.86(2)3.692(2)143.4(15)

Symmetry codes: (i) ; (ii) ; (iii) .

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