Literature DB >> 25844206

Crystal structure of di-aqua-(μ2-tri-ethyl-ene-tetra-minehexa-acetato)-dizinc tetra-hydrate.

Huan Liu1, Li-Ping Lu1.   

Abstract

The reaction of ZnO and tri-ethyl-ene-tetra-minehexaacetic acid (H6TTHA) in aqueous solution after refluxing yields the binuclear title compound, [Zn2(C18H26N4O12)(H2O)2]·4H2O. There is a centre of symmetry in the [Zn2(H2TTHA)(H2O)2] mol-ecule in the crystalline state. Both Zn(II) ions are octahedrally surrounded and bound by an N2O3 donor set from the H2TTHA(4-) anion and a water mol-ecule; the N atoms are cis and the water mol-ecule is trans to an N atom. The ZnZn separation is 7.562 (1) Å. An intra-molecular C-H⋯O inter-action is observed and both carboxyl-ate H atoms are disordered over two adjacent sites. In the crystal, the components are linked by O-H⋯O and C-H⋯O hydrogen bonds generating a three-dimensonal network.

Entities:  

Keywords:  Crystal structure; binuclear ZnII complex; crystal structure; tri­ethyl­ene­tetra­minehexa­acetic acid

Year:  2015        PMID: 25844206      PMCID: PMC4350722          DOI: 10.1107/S2056989015002108

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For general background to the complexes of tri­ethyl­ene­tetra­minehexaacetic acid, see: Long et al. (2003 ▸); Lu & Zhu (2014 ▸); Mondry & Starynowicz (1998 ▸); Ouyang et al. (2007 ▸); Sethi et al. (2012 ▸); Shi et al. (2006 ▸); Song et al. (2003 ▸); Thompson et al. (1998 ▸); Wang et al. (2003 ▸); Wullens et al. (1996 ▸). For related structures, see: Carlson et al. (2010 ▸); Qian et al. (2013 ▸).

Experimental

Crystal data

[Zn2(C18H26N4O12)(H2O)2]·4H2O M = 729.26 Triclinic, a = 7.1330 (14) Å b = 8.7013 (16) Å c = 11.979 (2) Å α = 103.969 (2)° β = 101.052 (2)° γ = 100.882 (3)° V = 686.2 (2) Å3 Z = 1 Mo Kα radiation μ = 1.84 mm−1 T = 298 K 0.28 × 0.22 × 0.20 mm

Data collection

Bruker SMART APEX CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2000 ▸) T min = 0.627, T max = 0.710 3582 measured reflections 2384 independent reflections 2080 reflections with I > 2σ(I) R int = 0.057

Refinement

R[F 2 > 2σ(F 2)] = 0.034 wR(F 2) = 0.089 S = 0.99 2384 reflections 190 parameters H-atom parameters constrained Δρmax = 0.49 e Å−3 Δρmin = −0.76 e Å−3

Data collection: SMART (Bruker, 2000 ▸); cell refinement: SAINT (Bruker, 2000 ▸); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▸); molecular graphics: SHELXTL/PC (Sheldrick, 2008 ▸); software used to prepare material for publication: SHELXTL/PC. Crystal structure: contains datablock(s) I. DOI: 10.1107/S2056989015002108/hb7351sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015002108/hb7351Isup2.hkl Click here for additional data file. . DOI: 10.1107/S2056989015002108/hb7351fig1.tif A view of the structure of the title complex with displacement ellipsoids drawn at the 50% probability level. Dash open line indicates hydrogen bonding inter­action. Click here for additional data file. . DOI: 10.1107/S2056989015002108/hb7351fig2.tif The packing diagram of the title compound, Zn dark green C gray, N blue,H light green, O red. CCDC reference: 1046672 Additional supporting information: crystallographic information; 3D view; checkCIF report
[Zn2(C18H26N4O12)(H2O)2]·4H2OZ = 1
Mr = 729.26F(000) = 378
Triclinic, P1Dx = 1.765 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.1330 (14) ÅCell parameters from 2008 reflections
b = 8.7013 (16) Åθ = 2.6–26.9°
c = 11.979 (2) ŵ = 1.84 mm1
α = 103.969 (2)°T = 298 K
β = 101.052 (2)°Block, colorless
γ = 100.882 (3)°0.28 × 0.22 × 0.20 mm
V = 686.2 (2) Å3
Bruker SMART APEX CCD diffractometer2384 independent reflections
Radiation source: fine-focus sealed tube2080 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.057
ω scansθmax = 25.0°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Bruker, 2000)h = −7→8
Tmin = 0.627, Tmax = 0.710k = −10→10
3582 measured reflectionsl = −14→9
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.034Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.089H-atom parameters constrained
S = 0.99w = 1/[σ2(Fo2) + (0.0505P)2] where P = (Fo2 + 2Fc2)/3
2384 reflections(Δ/σ)max < 0.001
190 parametersΔρmax = 0.49 e Å3
0 restraintsΔρmin = −0.75 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against all reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on all data will be even larger.
xyzUiso*/UeqOcc. (<1)
Zn10.27323 (5)0.29051 (4)0.29273 (3)0.02494 (14)
N10.0979 (4)0.0459 (3)0.2561 (2)0.0249 (5)
N20.0131 (4)0.3615 (3)0.3509 (2)0.0257 (5)
O10.3853 (3)0.2527 (2)0.45320 (18)0.0296 (5)
O20.3234 (4)0.0827 (3)0.5614 (2)0.0516 (7)
O30.4168 (3)0.1580 (3)0.17890 (19)0.0331 (5)
O40.3493 (3)−0.0649 (3)0.0251 (2)0.0390 (6)
H40.4574−0.03690.01200.058*0.50
O50.1248 (3)0.3442 (3)0.14014 (18)0.0312 (5)
O6−0.0748 (4)0.4953 (3)0.0850 (2)0.0437 (6)
H6−0.03930.48970.02320.065*0.50
O70.4665 (3)0.5080 (2)0.3369 (2)0.0377 (5)
H710.50330.57120.40420.057*
H720.45530.56220.28980.057*
C10.3041 (5)0.1170 (4)0.4670 (3)0.0315 (7)
C20.1742 (5)−0.0156 (4)0.3559 (3)0.0332 (7)
H2A0.2499−0.09260.32940.040*
H2B0.0634−0.07470.37720.040*
C30.3124 (4)0.0213 (4)0.1162 (3)0.0293 (7)
C40.1217 (5)−0.0520 (4)0.1428 (3)0.0300 (7)
H4A0.0114−0.05830.07890.036*
H4B0.1204−0.16230.14670.036*
C5−0.1051 (4)0.0634 (4)0.2504 (3)0.0341 (7)
H5A−0.1871−0.03700.25390.041*
H5B−0.15850.08250.17560.041*
C6−0.1089 (4)0.2049 (4)0.3529 (3)0.0308 (7)
H6A−0.24380.21330.34780.037*
H6B−0.06020.18350.42750.037*
C7−0.0878 (5)0.4310 (4)0.2619 (3)0.0383 (8)
H7A−0.07910.54490.29960.046*
H7B−0.22620.37400.23560.046*
C8−0.0028 (5)0.4194 (4)0.1545 (3)0.0303 (7)
C90.0821 (4)0.4801 (4)0.4711 (3)0.0293 (7)
H9A0.16060.58080.46570.035*
H9B0.16710.43670.52210.035*
O80.4369 (4)0.7275 (3)0.2220 (2)0.0575 (7)
H810.51960.79180.27980.086*
H820.49630.69240.17310.086*
O90.6210 (6)0.6889 (4)0.0405 (3)0.0923 (12)
H910.65120.6831−0.02290.138*
H920.66380.62050.06730.138*
U11U22U33U12U13U23
Zn10.0260 (2)0.0262 (2)0.0228 (2)0.00595 (14)0.00896 (14)0.00540 (14)
N10.0269 (13)0.0268 (12)0.0197 (13)0.0050 (10)0.0083 (10)0.0037 (10)
N20.0287 (14)0.0320 (13)0.0212 (13)0.0122 (11)0.0122 (11)0.0081 (11)
O10.0362 (12)0.0283 (11)0.0223 (11)0.0051 (9)0.0041 (9)0.0079 (9)
O20.0700 (18)0.0531 (15)0.0268 (13)0.0008 (13)0.0058 (12)0.0186 (12)
O30.0289 (12)0.0353 (12)0.0319 (13)0.0060 (10)0.0140 (10)0.0003 (10)
O40.0419 (14)0.0420 (13)0.0306 (13)0.0098 (11)0.0181 (10)−0.0007 (11)
O50.0339 (12)0.0416 (12)0.0242 (11)0.0155 (10)0.0122 (9)0.0121 (10)
O60.0534 (16)0.0635 (16)0.0340 (13)0.0340 (13)0.0195 (12)0.0288 (12)
O70.0442 (14)0.0321 (12)0.0300 (13)−0.0023 (10)0.0068 (10)0.0075 (10)
C10.0356 (18)0.0370 (17)0.0258 (17)0.0140 (15)0.0111 (14)0.0097 (14)
C20.0449 (19)0.0280 (16)0.0296 (18)0.0088 (14)0.0127 (15)0.0111 (14)
C30.0320 (17)0.0348 (17)0.0245 (17)0.0140 (14)0.0092 (14)0.0086 (14)
C40.0348 (18)0.0285 (15)0.0231 (16)0.0047 (13)0.0093 (13)0.0017 (13)
C50.0263 (17)0.0383 (18)0.0325 (18)0.0018 (14)0.0097 (14)0.0038 (15)
C60.0256 (16)0.0378 (17)0.0302 (18)0.0066 (14)0.0136 (13)0.0074 (14)
C70.043 (2)0.055 (2)0.0338 (19)0.0285 (17)0.0212 (16)0.0214 (17)
C80.0318 (17)0.0341 (17)0.0258 (17)0.0094 (14)0.0080 (13)0.0088 (14)
C90.0277 (16)0.0328 (16)0.0285 (17)0.0088 (14)0.0136 (13)0.0048 (13)
O80.0607 (18)0.0574 (17)0.0524 (17)0.0100 (14)0.0120 (14)0.0173 (14)
O90.115 (3)0.089 (2)0.108 (3)0.047 (2)0.076 (3)0.036 (2)
Zn1—O72.003 (2)C1—C21.530 (4)
Zn1—O12.063 (2)C2—H2A0.9700
Zn1—O32.112 (2)C2—H2B0.9700
Zn1—O52.130 (2)C3—C41.516 (4)
Zn1—N12.150 (2)C4—H4A0.9700
Zn1—N22.243 (2)C4—H4B0.9700
N1—C51.474 (4)C5—C61.523 (4)
N1—C41.477 (4)C5—H5A0.9700
N1—C21.477 (4)C5—H5B0.9700
N2—C61.480 (4)C6—H6A0.9700
N2—C71.483 (4)C6—H6B0.9700
N2—C91.483 (4)C7—C81.514 (4)
O1—C11.277 (4)C7—H7A0.9700
O2—C11.227 (4)C7—H7B0.9700
O3—C31.246 (4)C9—C9i1.523 (5)
O4—C31.270 (4)C9—H9A0.9700
O4—H40.8200C9—H9B0.9700
O5—C81.232 (4)O8—H810.8203
O6—C81.274 (4)O8—H820.8203
O6—H60.8199O9—H910.8207
O7—H710.8199O9—H920.8211
O7—H720.8200
O7—Zn1—O191.79 (8)N1—C2—H2B108.6
O7—Zn1—O397.19 (9)C1—C2—H2B108.6
O1—Zn1—O3102.29 (8)H2A—C2—H2B107.6
O7—Zn1—O588.93 (9)O3—C3—O4124.8 (3)
O1—Zn1—O5171.03 (8)O3—C3—C4120.6 (3)
O3—Zn1—O586.48 (8)O4—C3—C4114.6 (3)
O7—Zn1—N1172.37 (9)N1—C4—C3111.7 (2)
O1—Zn1—N182.46 (8)N1—C4—H4A109.3
O3—Zn1—N179.26 (9)C3—C4—H4A109.3
O5—Zn1—N197.53 (9)N1—C4—H4B109.3
O7—Zn1—N2101.71 (9)C3—C4—H4B109.3
O1—Zn1—N292.61 (9)H4A—C4—H4B107.9
O3—Zn1—N2155.51 (9)N1—C5—C6110.8 (2)
O5—Zn1—N278.50 (8)N1—C5—H5A109.5
N1—Zn1—N283.63 (9)C6—C5—H5A109.5
C5—N1—C4113.2 (2)N1—C5—H5B109.5
C5—N1—C2112.3 (2)C6—C5—H5B109.5
C4—N1—C2111.4 (2)H5A—C5—H5B108.1
C5—N1—Zn1104.87 (18)N2—C6—C5111.6 (2)
C4—N1—Zn1107.68 (17)N2—C6—H6A109.3
C2—N1—Zn1106.79 (18)C5—C6—H6A109.3
C6—N2—C7112.4 (3)N2—C6—H6B109.3
C6—N2—C9111.3 (2)C5—C6—H6B109.3
C7—N2—C9112.1 (2)H6A—C6—H6B108.0
C6—N2—Zn1103.30 (16)N2—C7—C8113.6 (2)
C7—N2—Zn1108.16 (17)N2—C7—H7A108.8
C9—N2—Zn1109.12 (17)C8—C7—H7A108.8
C1—O1—Zn1115.50 (19)N2—C7—H7B108.8
C3—O3—Zn1113.58 (19)C8—C7—H7B108.8
C3—O4—H4118.3H7A—C7—H7B107.7
C8—O5—Zn1116.02 (19)O5—C8—O6125.4 (3)
C8—O6—H6118.2O5—C8—C7121.3 (3)
Zn1—O7—H71123.8O6—C8—C7113.3 (3)
Zn1—O7—H72117.0N2—C9—C9i114.6 (3)
H71—O7—H72108.0N2—C9—H9A108.6
O2—C1—O1125.6 (3)C9i—C9—H9A108.6
O2—C1—C2117.1 (3)N2—C9—H9B108.6
O1—C1—C2117.3 (3)C9i—C9—H9B108.6
N1—C2—C1114.6 (2)H9A—C9—H9B107.6
N1—C2—H2A108.6H81—O8—H82107.0
C1—C2—H2A108.6H91—O9—H92106.8
O1—Zn1—N1—C5111.87 (18)O7—Zn1—O5—C8−87.6 (2)
O3—Zn1—N1—C5−144.02 (19)O3—Zn1—O5—C8175.2 (2)
O5—Zn1—N1—C5−59.08 (19)N1—Zn1—O5—C896.5 (2)
N2—Zn1—N1—C518.38 (18)N2—Zn1—O5—C814.6 (2)
O1—Zn1—N1—C4−127.26 (19)Zn1—O1—C1—O2−166.3 (3)
O3—Zn1—N1—C4−23.16 (18)Zn1—O1—C1—C214.7 (3)
O5—Zn1—N1—C461.78 (19)C5—N1—C2—C1−97.9 (3)
N2—Zn1—N1—C4139.24 (19)C4—N1—C2—C1133.9 (3)
O1—Zn1—N1—C2−7.52 (18)Zn1—N1—C2—C116.6 (3)
O3—Zn1—N1—C296.59 (19)O2—C1—C2—N1159.0 (3)
O5—Zn1—N1—C2−178.48 (18)O1—C1—C2—N1−21.9 (4)
N2—Zn1—N1—C2−101.02 (19)Zn1—O3—C3—O4164.5 (2)
O7—Zn1—N2—C6−164.05 (17)Zn1—O3—C3—C4−13.1 (4)
O1—Zn1—N2—C6−71.68 (18)C5—N1—C4—C3138.9 (3)
O3—Zn1—N2—C656.2 (3)C2—N1—C4—C3−93.3 (3)
O5—Zn1—N2—C6109.49 (18)Zn1—N1—C4—C323.4 (3)
N1—Zn1—N2—C610.43 (18)O3—C3—C4—N1−7.9 (4)
O7—Zn1—N2—C776.6 (2)O4—C3—C4—N1174.3 (2)
O1—Zn1—N2—C7169.0 (2)C4—N1—C5—C6−162.2 (3)
O3—Zn1—N2—C7−63.1 (3)C2—N1—C5—C670.6 (3)
O5—Zn1—N2—C7−9.9 (2)Zn1—N1—C5—C6−45.0 (3)
N1—Zn1—N2—C7−108.9 (2)C7—N2—C6—C578.5 (3)
O7—Zn1—N2—C9−45.53 (19)C9—N2—C6—C5−154.9 (3)
O1—Zn1—N2—C946.84 (19)Zn1—N2—C6—C5−37.9 (3)
O3—Zn1—N2—C9174.73 (19)N1—C5—C6—N259.6 (3)
O5—Zn1—N2—C9−131.99 (19)C6—N2—C7—C8−107.8 (3)
N1—Zn1—N2—C9128.95 (19)C9—N2—C7—C8126.0 (3)
O7—Zn1—O1—C1−178.9 (2)Zn1—N2—C7—C85.6 (3)
O3—Zn1—O1—C1−81.1 (2)Zn1—O5—C8—O6162.7 (3)
N1—Zn1—O1—C1−3.9 (2)Zn1—O5—C8—C7−16.4 (4)
N2—Zn1—O1—C179.3 (2)N2—C7—C8—O56.7 (5)
O7—Zn1—O3—C3−166.2 (2)N2—C7—C8—O6−172.5 (3)
O1—Zn1—O3—C3100.4 (2)C6—N2—C9—C9i−58.1 (4)
O5—Zn1—O3—C3−77.7 (2)C7—N2—C9—C9i68.7 (4)
N1—Zn1—O3—C320.6 (2)Zn1—N2—C9—C9i−171.5 (3)
N2—Zn1—O3—C3−25.8 (3)
D—H···AD—HH···AD···AD—H···A
C9—H9B···O10.972.543.198 (4)125
C2—H2A···O8ii0.972.523.476 (4)168
C5—H5B···O4iii0.972.483.428 (4)166
O7—H71···O1iv0.821.912.720 (3)169
O7—H72···O80.821.832.627 (3)164
O8—H81···O2iv0.821.942.747 (4)166
O8—H82···O90.821.962.734 (4)157
O9—H91···O5v0.822.333.074 (4)151
O9—H92···O6vi0.822.333.033 (4)144
Table 1

Selected bond lengths ()

Zn1O72.003(2)
Zn1O12.063(2)
Zn1O32.112(2)
Zn1O52.130(2)
Zn1N12.150(2)
Zn1N22.243(2)
Table 2

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
C9H9BO10.972.543.198(4)125
C2H2AO8i 0.972.523.476(4)168
C5H5BO4ii 0.972.483.428(4)166
O7H71O1iii 0.821.912.720(3)169
O7H72O80.821.832.627(3)164
O8H81O2iii 0.821.942.747(4)166
O8H82O90.821.962.734(4)157
O9H91O5iv 0.822.333.074(4)151
O9H92O6v 0.822.333.033(4)144

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

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