Literature DB >> 25844203

Crystal structure of catena-poly[silver(I)-μ-l-tyrosinato-κ(2) O:N].

Aqsa Yousaf1, Muhammad Nawaz Tahir2, Abdul Rauf1, Shafique Ahmad Awan3, Saeed Ahmad1.   

Abstract

The title compound, [Ag(C9H10NO3)] n , is a polymeric silver(I) complex of l-tyrosine. The Ag(I) atom is connected to N and O atoms of two different l-tyrosine ligands in an almost linear arrangement, with an N(i)-Ag-O1 bond angle of 173.4 (2)° [symmetry code: (i) x + 1, y, z]. The Ag-N(i) and Ag-O bond lengths are 2.156 (5) and 2.162 (4) Å, respectively. The polymeric chains extend along the crystallographic a axis. Strong hydrogen bonds of the N-H⋯O and O-H⋯O types and additional C-H⋯O inter-actions connect these chains into a double-layer polymeric network in the ab plane.

Entities:  

Keywords:  crystal structure; hydrogen bonding; l-tyrosinate; one-dimensional silver(I) coordination polymer

Year:  2015        PMID: 25844203      PMCID: PMC4350688          DOI: 10.1107/S2056989015001905

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For related structures and studies, see: Ahmad et al. (2006 ▸); Kasuga et al. (2011 ▸); Nomiya et al. (2000 ▸); Nomiya & Yokoyama (2002 ▸).

Experimental

Crystal data

[Ag(C9H10NO3)] M = 288.05 Monoclinic, a = 7.2944 (5) Å b = 7.1464 (5) Å c = 9.2736 (7) Å β = 101.546 (4)° V = 473.64 (6) Å3 Z = 2 Mo Kα radiation μ = 2.11 mm−1 T = 296 K 0.34 × 0.20 × 0.18 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▸) T min = 0.538, T max = 0.701 4086 measured reflections 1816 independent reflections 1752 reflections with I > 2σ(I) R int = 0.023

Refinement

R[F 2 > 2σ(F 2)] = 0.022 wR(F 2) = 0.052 S = 1.11 1816 reflections 134 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.28 e Å−3 Δρmin = −0.48 e Å−3 Absolute structure: Flack x determined using 751 quotients [(I +)−(I −)]/[(I +)+(I −)] (Parsons et al., 2013 ▸) Absolute structure parameter: 0.04 (2)

Data collection: APEX2 (Bruker, 2007 ▸); cell refinement: SAINT (Bruker, 2007 ▸); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▸); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▸) and PLATON (Spek, 2009 ▸); software used to prepare material for publication: WinGX (Farrugia, 2012 ▸) and PLATON. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S2056989015001905/im2459sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015001905/im2459Isup2.hkl Click here for additional data file. . DOI: 10.1107/S2056989015001905/im2459fig1.tif View of the asymmetric unit of the title compound. Thermal ellipsoids are drawn at the 50% probability level. H atoms are shown by small circles of arbitrary radii. Click here for additional data file. PLATON . DOI: 10.1107/S2056989015001905/im2459fig2.tif The partial packing (PLATON; Spek, 2009) showing the polymeric network due to C—H⋯O, N—H⋯O and O—H⋯O inter­actions. H atoms not involved in hydrogen-bonding inter­actions are omitted for clarity. CCDC reference: 1046166 Additional supporting information: crystallographic information; 3D view; checkCIF report
[Ag(C9H10NO3)]F(000) = 284
Mr = 288.05Dx = 2.020 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
a = 7.2944 (5) ÅCell parameters from 1753 reflections
b = 7.1464 (5) Åθ = 2.9–26.0°
c = 9.2736 (7) ŵ = 2.11 mm1
β = 101.546 (4)°T = 296 K
V = 473.64 (6) Å3Block, colorless
Z = 20.34 × 0.20 × 0.18 mm
Bruker Kappa APEXII CCD diffractometer1816 independent reflections
Radiation source: fine-focus sealed tube1752 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.023
Detector resolution: 8.00 pixels mm-1θmax = 26.0°, θmin = 2.9°
ω scansh = −8→8
Absorption correction: multi-scan (SADABS; Bruker, 2005)k = −8→8
Tmin = 0.538, Tmax = 0.701l = −11→11
4086 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.022H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.052w = 1/[σ2(Fo2) + (0.0222P)2 + 0.0305P] where P = (Fo2 + 2Fc2)/3
S = 1.11(Δ/σ)max = 0.001
1816 reflectionsΔρmax = 0.28 e Å3
134 parametersΔρmin = −0.48 e Å3
1 restraintAbsolute structure: Flack x determined using 751 quotients [(I+)-(I-)]/[(I+)+(I-)] (Parsons et al., 2013)
Primary atom site location: structure-invariant direct methodsAbsolute structure parameter: 0.04 (2)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
Ag10.95099 (4)0.57540 (7)0.87242 (4)0.04160 (14)
O10.6862 (5)0.4646 (5)0.9045 (4)0.0364 (8)
O20.5870 (6)0.7436 (5)0.8171 (6)0.0493 (10)
O3−0.4102 (5)0.0526 (9)0.6482 (4)0.0418 (12)
H3−0.4074−0.02850.71110.063*
N10.2293 (6)0.6694 (6)0.8634 (6)0.0367 (10)
H1A0.219 (9)0.716 (8)0.781 (7)0.044*
H1B0.282 (9)0.725 (9)0.945 (7)0.044*
C10.5594 (5)0.5852 (11)0.8581 (4)0.0270 (9)
C20.3595 (7)0.5138 (6)0.8509 (5)0.0265 (11)
H20.36010.42670.93260.032*
C30.2963 (7)0.4091 (7)0.7071 (5)0.0307 (10)
H3A0.29210.49630.62640.037*
H3B0.38920.31460.69890.037*
C40.1078 (7)0.3152 (6)0.6902 (5)0.0273 (10)
C50.0880 (7)0.1543 (6)0.7700 (5)0.0312 (10)
H50.19250.10520.83270.037*
C6−0.0825 (6)0.0651 (10)0.7588 (5)0.0312 (9)
H6−0.0914−0.04170.81430.037*
C7−0.2405 (6)0.1346 (6)0.6650 (5)0.0290 (11)
C8−0.2230 (7)0.2942 (7)0.5838 (6)0.0336 (11)
H8−0.32720.34220.52000.040*
C9−0.0515 (7)0.3826 (7)0.5972 (5)0.0324 (11)
H9−0.04290.49000.54230.039*
U11U22U33U12U13U23
Ag10.01769 (18)0.0458 (2)0.0638 (3)−0.0039 (2)0.01412 (15)−0.0078 (3)
O10.0186 (19)0.044 (2)0.047 (2)0.0018 (16)0.0080 (16)0.0041 (17)
O20.034 (2)0.038 (2)0.077 (3)−0.0093 (18)0.015 (2)0.0112 (19)
O30.0268 (16)0.039 (3)0.057 (2)−0.009 (2)0.0010 (14)0.004 (2)
N10.020 (2)0.039 (2)0.052 (3)−0.0001 (19)0.010 (2)−0.006 (2)
C10.0209 (19)0.031 (2)0.030 (2)−0.006 (3)0.0076 (15)−0.007 (3)
C20.019 (3)0.031 (3)0.031 (3)−0.0017 (16)0.0073 (19)0.0005 (16)
C30.025 (3)0.037 (3)0.032 (3)−0.006 (2)0.009 (2)−0.003 (2)
C40.027 (2)0.029 (2)0.025 (2)−0.0037 (19)0.005 (2)−0.0037 (18)
C50.027 (2)0.027 (2)0.036 (3)0.0020 (19)−0.002 (2)0.0040 (19)
C60.035 (2)0.024 (2)0.034 (2)−0.004 (3)0.0055 (17)0.000 (3)
C70.024 (2)0.029 (3)0.033 (3)−0.0052 (17)0.005 (2)−0.0073 (17)
C80.025 (3)0.038 (3)0.035 (3)−0.002 (2)−0.001 (2)0.001 (2)
C90.034 (3)0.033 (2)0.030 (3)−0.003 (2)0.004 (2)0.0053 (19)
Ag1—N1i2.156 (4)C3—C41.510 (6)
Ag1—O12.162 (4)C3—H3A0.9700
O1—C11.275 (7)C3—H3B0.9700
O2—C11.224 (9)C4—C91.388 (7)
O3—C71.350 (6)C4—C51.390 (6)
O3—H30.8200C5—C61.383 (7)
N1—C21.482 (6)C5—H50.9300
N1—Ag1ii2.156 (4)C6—C71.390 (7)
N1—H1A0.83 (6)C6—H60.9300
N1—H1B0.87 (7)C7—C81.386 (6)
C1—C21.534 (6)C8—C91.385 (7)
C2—C31.518 (7)C8—H80.9300
C2—H20.9800C9—H90.9300
N1i—Ag1—O1173.41 (18)C4—C3—H3B108.6
C1—O1—Ag1108.3 (3)C2—C3—H3B108.6
C7—O3—H3109.5H3A—C3—H3B107.5
C2—N1—Ag1ii113.1 (3)C9—C4—C5117.0 (4)
C2—N1—H1A100 (4)C9—C4—C3122.8 (4)
Ag1ii—N1—H1A105 (4)C5—C4—C3120.1 (4)
C2—N1—H1B103 (4)C6—C5—C4122.0 (5)
Ag1ii—N1—H1B111 (4)C6—C5—H5119.0
H1A—N1—H1B124 (6)C4—C5—H5119.0
O2—C1—O1125.2 (4)C5—C6—C7120.2 (5)
O2—C1—C2120.6 (5)C5—C6—H6119.9
O1—C1—C2114.2 (6)C7—C6—H6119.9
N1—C2—C3110.6 (4)O3—C7—C8118.5 (5)
N1—C2—C1111.4 (5)O3—C7—C6122.9 (5)
C3—C2—C1108.7 (4)C8—C7—C6118.6 (5)
N1—C2—H2108.7C9—C8—C7120.4 (5)
C3—C2—H2108.7C9—C8—H8119.8
C1—C2—H2108.7C7—C8—H8119.8
C4—C3—C2114.8 (4)C8—C9—C4121.8 (4)
C4—C3—H3A108.6C8—C9—H9119.1
C2—C3—H3A108.6C4—C9—H9119.1
Ag1—O1—C1—O2−7.0 (6)C2—C3—C4—C5−73.4 (6)
Ag1—O1—C1—C2170.8 (3)C9—C4—C5—C6−0.5 (7)
Ag1ii—N1—C2—C363.8 (5)C3—C4—C5—C6179.3 (5)
Ag1ii—N1—C2—C1−175.2 (3)C4—C5—C6—C70.6 (7)
O2—C1—C2—N1−28.0 (7)C5—C6—C7—O3179.2 (5)
O1—C1—C2—N1154.2 (4)C5—C6—C7—C8−0.1 (7)
O2—C1—C2—C394.2 (6)O3—C7—C8—C9−179.8 (5)
O1—C1—C2—C3−83.6 (5)C6—C7—C8—C9−0.4 (7)
N1—C2—C3—C4−62.6 (5)C7—C8—C9—C40.5 (7)
C1—C2—C3—C4174.7 (5)C5—C4—C9—C80.0 (7)
C2—C3—C4—C9106.5 (5)C3—C4—C9—C8−179.8 (4)
D—H···AD—HH···AD···AD—H···A
O3—H3···O2iii0.821.912.710 (7)166
N1—H1B···O1iv0.87 (7)2.19 (7)2.988 (6)152 (5)
C2—H2···O2v0.982.633.589 (7)168
C3—H3B···O3i0.972.483.441 (7)171
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
O3H3O2i 0.821.912.710(7)166
N1H1BO1ii 0.87(7)2.19(7)2.988(6)152(5)
C2H2O2iii 0.982.633.589(7)168
C3H3BO3iv 0.972.483.441(7)171

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis and characterization of water-soluble silver(I) complexes with L-histidine (H2his) and (S)-(-)-2-pyrrolidone-5-carboxylic acid (H2pyrrld) showing a wide spectrum of effective antibacterial and antifungal activities. Crystal structures of chiral helical polymers [Ag(Hhis)]n and ([Ag(Hpyrrld)]2)n in the solid state.

Authors:  K Nomiya; S Takahashi; R Noguchi; S Nemoto; T Takayama; M Oda
Journal:  Inorg Chem       Date:  2000-07-24       Impact factor: 5.165

3.  Use of intensity quotients and differences in absolute structure refinement.

Authors:  Simon Parsons; Howard D Flack; Trixie Wagner
Journal:  Acta Crystallogr B Struct Sci Cryst Eng Mater       Date:  2013-05-17

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total

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