Literature DB >> 25832863

Identification of potential therapeutic target genes, key miRNAs and mechanisms in acute myeloid leukemia based on bioinformatics analysis.

Yanhong Zhao1, Xuefang Zhang, Yanqiu Zhao, Desheng Kong, Fan Qin, Jing Sun, Ying Dong.   

Abstract

The study was aimed to explore the underlying mechanisms and identify the potential target genes and key miRNAs for acute myeloid leukemia (AML) treatment by bioinformatics analysis. The microarray data of GSE9476 were downloaded from Gene Expression Omnibus database. A total of 64 samples, including 26 AML and 38 normal samples, were used to identify differentially expressed genes (DEGs) between AML and normal samples. The functional enrichment analysis was performed, and protein-protein interaction (PPI) network of the DEGs was constructed by Cytoscape software. Besides, the target miRNAs for DEGs were identified. Totally, 323 DEGs were identified, including 87 up-regulated and 236 down-regulated genes. Not only up-regulated genes but also down-regulated genes were related to hematopoietic-related functions. Besides, down-regulated genes were also enriched in primary immunodeficiency pathway. Tumor necrosis factor (TNF), interleukin 7 receptor (IL7R), lymphocyte-specific protein tyrosine kinase (LCK), CD79a molecule and immunoglobulin-associated alpha (CD79A) were identified in these functions. TNF and LCK were hub nodes in PPI networks. miR-124 and miR-181 were important miRNAs in this study. The hematopoietic-related functions and primary immunodeficiency pathway may be associated with AML development. Genes, such as TNF, IL7R, LCK and CD79A, may be potential therapeutic target genes for AML, and miR-124 and miR-181 may be key miRNAs in AML development.

Entities:  

Mesh:

Substances:

Year:  2015        PMID: 25832863     DOI: 10.1007/s12032-015-0572-4

Source DB:  PubMed          Journal:  Med Oncol        ISSN: 1357-0560            Impact factor:   3.064


  30 in total

1.  Silencing of hsa-miR-124 by EVI1 in cell lines and patients with acute myeloid leukemia.

Authors:  Iria Vázquez; Miren Maicas; Nerea Marcotegui; Ana Conchillo; Elisabet Guruceaga; José Roman-Gomez; María J Calasanz; Xabier Agirre; Felipe Prosper; María D Odero
Journal:  Proc Natl Acad Sci U S A       Date:  2010-10-07       Impact factor: 11.205

2.  Opposite effects of tumor necrosis factor alpha on the sphingomyelin-ceramide pathway in two myeloid leukemia cell lines: role of transverse sphingomyelin distribution in the plasma membrane.

Authors:  A Bettaieb; M Record; M G Côme; A C Bras; H Chap; G Laurent; J P Jaffrézou
Journal:  Blood       Date:  1996-08-15       Impact factor: 22.113

Review 3.  The prognostic and functional role of microRNAs in acute myeloid leukemia.

Authors:  Guido Marcucci; Krzysztof Mrózek; Michael D Radmacher; Ramiro Garzon; Clara D Bloomfield
Journal:  Blood       Date:  2010-11-02       Impact factor: 22.113

Review 4.  Acute myeloid leukemia.

Authors:  Jeffrey E Rubnitz; Brenda Gibson; Franklin O Smith
Journal:  Hematol Oncol Clin North Am       Date:  2010-02       Impact factor: 3.722

5.  CIP2A is over-expressed in acute myeloid leukaemia and associated with HL60 cells proliferation and differentiation.

Authors:  J Wang; W Li; L Li; X Yu; J Jia; C Chen
Journal:  Int J Lab Hematol       Date:  2011-01-11       Impact factor: 2.877

Review 6.  Src in cancer: deregulation and consequences for cell behaviour.

Authors:  Margaret C Frame
Journal:  Biochim Biophys Acta       Date:  2002-06-21

7.  Somatic mutation of IL7R exon 6 in acute leukemias and solid cancers.

Authors:  Min Sung Kim; Nak Gyun Chung; Myung Shin Kim; Nam Jin Yoo; Sug Hyung Lee
Journal:  Hum Pathol       Date:  2012-10-12       Impact factor: 3.466

8.  Expression and role in growth regulation of tumour necrosis factor receptors p55 and p75 in acute myeloblastic leukaemia cells.

Authors:  A Carter; N Haddad; I Draxler; E Israeli; B Raz; J M Rowe
Journal:  Br J Haematol       Date:  1996-01       Impact factor: 6.998

9.  CD79a: a novel marker for B-cell neoplasms in routinely processed tissue samples.

Authors:  D Y Mason; J L Cordell; M H Brown; J Borst; M Jones; K Pulford; E Jaffe; E Ralfkiaer; F Dallenbach; H Stein
Journal:  Blood       Date:  1995-08-15       Impact factor: 22.113

10.  PathwayVoyager: pathway mapping using the Kyoto Encyclopedia of Genes and Genomes (KEGG) database.

Authors:  Eric Altermann; Todd R Klaenhammer
Journal:  BMC Genomics       Date:  2005-05-03       Impact factor: 3.969

View more
  6 in total

1.  Global view of a drug-sensitivity gene network.

Authors:  Haixiu Yang; Yunpeng Zhang; Jiasheng Wang; Tan Wu; Siyao Liu; Yanjun Xu; Desi Shang
Journal:  Oncotarget       Date:  2017-12-14

2.  The relationship of miR-181a expression level and AML: A systematic review protocol.

Authors:  Mohsen Koolivand; Sohaila Moein; Kianoosh MalekZadeh
Journal:  Int J Surg Protoc       Date:  2018-12-24

3.  New horizons in drug discovery of lymphocyte-specific protein tyrosine kinase (Lck) inhibitors: a decade review (2011-2021) focussing on structure-activity relationship (SAR) and docking insights.

Authors:  Ahmed Elkamhawy; Eslam M H Ali; Kyeong Lee
Journal:  J Enzyme Inhib Med Chem       Date:  2021-12       Impact factor: 5.051

4.  The Src family kinase LCK cooperates with oncogenic FLT3/ITD in cellular transformation.

Authors:  Alissa Marhäll; Julhash U Kazi; Lars Rönnstrand
Journal:  Sci Rep       Date:  2017-10-23       Impact factor: 4.379

5.  In silico prediction and validation of potential therapeutic genes in pancreatic β-cells associated with type 2 diabetes.

Authors:  Di Yi Zhou; Xin Mou; Kaiyuan Liu; Wen Hong Liu; Ya Qing Xu; Danyang Zhou
Journal:  Exp Ther Med       Date:  2020-09-04       Impact factor: 2.447

6.  A comprehensive analysis of the expression and regulation network of lymphocyte-specific protein tyrosine kinase in breast cancer.

Authors:  Yuhua Meng; Ting Huang; Xuanzhao Chen; Yuanzhi Lu
Journal:  Transl Cancer Res       Date:  2021-03       Impact factor: 1.241

  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.