Literature DB >> 25832726

Segregation of ovarian cancer stage exploiting spectral biomarkers derived from blood plasma or serum analysis: ATR-FTIR spectroscopy coupled with variable selection methods.

Kássio M G Lima1,2, Ketan B Gajjar1,3, Pierre L Martin-Hirsch1, Francis L Martin1.   

Abstract

Ovarian cancer is a solid tumor and a leading cause of mortality. Diagnostic tools for the detection of early stage (stage I) ovarian cancer are urgently needed. For this purpose, attenuated total reflection Fourier-transform infrared spectroscopy (ATR-FTIR) coupled with variable selection methods, successive projection algorithm or genetic algorithm (GA) combined with linear discriminant analysis (LDA), were employed to identify spectral biomarkers in blood plasma or serum samples for accurate diagnosis of different stages of ovarian cancer, histological type and segregation based on age. Three spectral datasets (stage I vs. stage II-IV; serous vs. non-serous carcinoma; and, ≤60 years vs. >60 years) were processed: sensitivity and specificity required for real-world diagnosis of ovarian cancer was achieved. Toward segregating stage I vs. stage II-IV, sensitivity and specificity (plasma blood) of 100% was achieved using a GA-LDA model with 33 wavenumbers. For serous vs. non-serous category (plasma blood), the sensitivity and specificity levels, using 29 wavenumbers by GA-LDA, were remarkable (up to 94%). For ≤60 years and >60 years categories (plasma blood), the sensitivity and specificity, using 42 wavenumbers by GA-LDA, gave complete accuracy (100%). For serum samples, sensitivity and specificity results gave relatively high accuracy (up to 91.6% stage I vs. stage II-IV; up to 93.0% serous vs. non-serous; and, up to 96.0% ≤60 years vs. >60 years) using several wavenumbers. These findings justify a prospective population-based assessment of biomarkers signatures using ATR-FTIR spectroscopy as a screening tool for stage of ovarian cancer.
© 2015 American Institute of Chemical Engineers.

Entities:  

Keywords:  ATR/FTIR spectroscopy; biospectroscopy; classification analysis; ovarian cancer; screening; wavenumber selection

Mesh:

Substances:

Year:  2015        PMID: 25832726     DOI: 10.1002/btpr.2084

Source DB:  PubMed          Journal:  Biotechnol Prog        ISSN: 1520-6033


  8 in total

1.  ATR-IR Spectroscopy Application to Diagnostic Screening of Advanced Endometriosis.

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Journal:  Oxid Med Cell Longev       Date:  2022-06-06       Impact factor: 7.310

Review 2.  Vibrational Biospectroscopy: An Alternative Approach to Endometrial Cancer Diagnosis and Screening.

Authors:  Roberta Schiemer; David Furniss; Sendy Phang; Angela B Seddon; William Atiomo; Ketankumar B Gajjar
Journal:  Int J Mol Sci       Date:  2022-04-27       Impact factor: 6.208

3.  Use of Fourier-transform infrared spectroscopy in the diagnosis of rheumatoid arthritis: a pilot study.

Authors:  Lukasz Lechowicz; Magdalena Chrapek; Jozef Gaweda; Mariusz Urbaniak; Iwona Konieczna
Journal:  Mol Biol Rep       Date:  2016-09-17       Impact factor: 2.316

4.  Mass spectrometry and multivariate analysis to classify cervical intraepithelial neoplasia from blood plasma: an untargeted lipidomic study.

Authors:  Ana C O Neves; Camilo L M Morais; Thais P P Mendes; Boniek G Vaz; Kássio M G Lima
Journal:  Sci Rep       Date:  2018-03-02       Impact factor: 4.379

Review 5.  Vibrational Spectroscopy Fingerprinting in Medicine: from Molecular to Clinical Practice.

Authors:  Vera Balan; Cosmin-Teodor Mihai; Florina-Daniela Cojocaru; Cristina-Mariana Uritu; Gianina Dodi; Doru Botezat; Ioannis Gardikiotis
Journal:  Materials (Basel)       Date:  2019-09-06       Impact factor: 3.623

6.  Multivariate classification techniques and mass spectrometry as a tool in the screening of patients with fibromyalgia.

Authors:  Marcelo V S Alves; Lanaia I L Maciel; Ruver R F Ramalho; Leomir A S Lima; Boniek G Vaz; Camilo L M Morais; João O S Passos; Rodrigo Pegado; Kássio M G Lima
Journal:  Sci Rep       Date:  2021-11-19       Impact factor: 4.379

7.  Characterization of ovarian cancer cells and tissues by Fourier transform infrared spectroscopy.

Authors:  Lei Li; Xiaoning Bi; Hengzi Sun; Simiao Liu; Mei Yu; Ying Zhang; Shifu Weng; Limin Yang; Yanan Bao; Jinguang Wu; Yizhuang Xu; Keng Shen
Journal:  J Ovarian Res       Date:  2018-08-02       Impact factor: 4.234

Review 8.  Fourier Transform Infrared Spectroscopy as a Cancer Screening and Diagnostic Tool: A Review and Prospects.

Authors:  Kar-Yan Su; Wai-Leng Lee
Journal:  Cancers (Basel)       Date:  2020-01-01       Impact factor: 6.639

  8 in total

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