Literature DB >> 25832354

A novel satellite DNA isolated in Pecten jacobaeus shows high sequence similarity among molluscs.

Agnese Petraccioli1, Gaetano Odierna1, Teresa Capriglione1, Marco Barucca2, Mariko Forconi2, Ettore Olmo2, Maria Assunta Biscotti3.   

Abstract

The aim of this work is to investigate the sequence conservation and the evolution of repeated DNA in related species. Satellite DNA is a component of eukaryotic genomes and is made up of tandemly repeated sequences. These sequences are affected by high rates of mutation that lead to the occurrence of species-specific satellite DNAs, which are different in terms of both quantity and quality. In this work, a novel repetitive DNA family, named PjHhaI sat, is described in Pecten jacobaeus. The quantitative analyses revealed a different abundance of this element in the molluscan species investigated in agreement with the "library hypothesis" even if, in this case, at a high taxonomic level. In addition, the qualitative analysis demonstrated an astonishing sequence conservation not only among scallops but also in six other molluscan species belonging to three classes. These findings suggest that the PjHhaI sat may be considered as the most ancients of DNA described so far, which remained "frozen" during molluscan evolution. The widespread distribution of this sat DNA in molluscs as well as its long evolutionary preservation open up questions on the functional role of this element. A future challenge might be the identification of proteins or molecules which interact with the PjHhaI sat.

Entities:  

Keywords:  Mollusca; Pecten jacobaeus; Pectinidae; Satellite DNA

Mesh:

Substances:

Year:  2015        PMID: 25832354     DOI: 10.1007/s00438-015-1036-4

Source DB:  PubMed          Journal:  Mol Genet Genomics        ISSN: 1617-4623            Impact factor:   3.291


  59 in total

1.  Recurrent amplifications and deletions of satellite DNA accompanied chromosomal diversification in South American tuco-tucos (genus Ctenomys, Rodentia: Octodontidae): a phylogenetic approach.

Authors:  C H Slamovits; J A Cook; E P Lessa; M S Rossi
Journal:  Mol Biol Evol       Date:  2001-09       Impact factor: 16.240

Review 2.  Satellite DNA evolution.

Authors:  M Plohl; N Meštrović; B Mravinac
Journal:  Genome Dyn       Date:  2012-06-25

Review 3.  Chromosome territories--a functional nuclear landscape.

Authors:  Thomas Cremer; Marion Cremer; Steffen Dietzel; Stefan Müller; Irina Solovei; Stanislav Fakan
Journal:  Curr Opin Cell Biol       Date:  2006-05-09       Impact factor: 8.382

4.  Initial analysis of tandemly repetitive sequences in the genome of Zhikong scallop (Chlamys farreri Jones et Preston).

Authors:  Lingling Zhang; Chao Chen; Jie Cheng; Shi Wang; Xiaoli Hu; Jingjie Hu; Zhenmin Bao
Journal:  DNA Seq       Date:  2008-06

5.  Relevance of satellite DNA genomic distribution in phylogenetic analysis: a case study with root-knot nematodes of the genus Meloidogyne.

Authors:  Nevenka Mestrović; Miroslav Plohl; Philippe Castagnone-Sereno
Journal:  Mol Phylogenet Evol       Date:  2008-10-26       Impact factor: 4.286

6.  Comparative analysis of different satellite DNAs in four Mytilus species.

Authors:  A Martínez-Lage; F Rodríguez; A González-Tizón; E Prats; L Cornudella; J Méndez
Journal:  Genome       Date:  2002-10       Impact factor: 2.166

7.  A satellite DNA containing CENP-B box-like motifs is present in the antarctic scallop Adamussium colbecki.

Authors:  A Canapa; M Barucca; P N Cerioni; E Olmo
Journal:  Gene       Date:  2000-04-18       Impact factor: 3.688

8.  Unusual chromosomal distribution of a major satellite DNA from Discoglossus pictus (Amphibia, Anura).

Authors:  N Amor; G Odierna; G Chinali; K Said; O Picariello
Journal:  Cytogenet Genome Res       Date:  2010-01-29       Impact factor: 1.636

9.  Tnat1 and Tnat2 from Arabidopsis thaliana: novel transposable elements with tandem repeat sequences.

Authors:  K Noma; E Ohtsubo
Journal:  DNA Res       Date:  2000-02-28       Impact factor: 4.458

10.  Pearl, a novel family of putative transposable elements in bivalve mollusks.

Authors:  Patrick M Gaffney; James C Pierce; Antony G Mackinley; Deborah A Titchen; Wendy K Glenn
Journal:  J Mol Evol       Date:  2003-03       Impact factor: 2.395

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  12 in total

Review 1.  Transcription of tandemly repetitive DNA: functional roles.

Authors:  Maria Assunta Biscotti; Adriana Canapa; Mariko Forconi; Ettore Olmo; Marco Barucca
Journal:  Chromosome Res       Date:  2015-09       Impact factor: 5.239

2.  W-enriched satellite sequence in the Indian meal moth, Plodia interpunctella (Lepidoptera, Pyralidae).

Authors:  Martina Dalíková; Magda Zrzavá; Svatava Kubíčková; František Marec
Journal:  Chromosome Res       Date:  2017-05-12       Impact factor: 5.239

3.  RUDI, a short interspersed element of the V-SINE superfamily widespread in molluscan genomes.

Authors:  Andrea Luchetti; Eva Šatović; Barbara Mantovani; Miroslav Plohl
Journal:  Mol Genet Genomics       Date:  2016-03-17       Impact factor: 2.980

4.  Adjacent sequences disclose potential for intra-genomic dispersal of satellite DNA repeats and suggest a complex network with transposable elements.

Authors:  Eva Satović; Tanja Vojvoda Zeljko; Andrea Luchetti; Barbara Mantovani; Miroslav Plohl
Journal:  BMC Genomics       Date:  2016-12-06       Impact factor: 3.969

Review 5.  Satellite DNA: An Evolving Topic.

Authors:  Manuel A Garrido-Ramos
Journal:  Genes (Basel)       Date:  2017-09-18       Impact factor: 4.096

6.  New insights into the genome repetitive fraction of the Antarctic bivalve Adamussium colbecki.

Authors:  Maria Assunta Biscotti; Marco Barucca; Adriana Canapa
Journal:  PLoS One       Date:  2018-03-28       Impact factor: 3.240

Review 7.  Rex Retroelements and Teleost Genomes: An Overview.

Authors:  Federica Carducci; Marco Barucca; Adriana Canapa; Maria Assunta Biscotti
Journal:  Int J Mol Sci       Date:  2018-11-20       Impact factor: 5.923

8.  A Long-Term Conserved Satellite DNA That Remains Unexpanded in Several Genomes of Characiformes Fish Is Actively Transcribed.

Authors:  Rodrigo Zeni Dos Santos; Rodrigo Milan Calegari; Duílio Mazzoni Zerbinato de Andrade Silva; Francisco J Ruiz-Ruano; Silvana Melo; Claudio Oliveira; Fausto Foresti; Marcela Uliano-Silva; Fábio Porto-Foresti; Ricardo Utsunomia
Journal:  Genome Biol Evol       Date:  2021-02-03       Impact factor: 3.416

9.  FA-SAT Is an Old Satellite DNA Frozen in Several Bilateria Genomes.

Authors:  Raquel Chaves; Daniela Ferreira; Ana Mendes-da-Silva; Susana Meles; Filomena Adega
Journal:  Genome Biol Evol       Date:  2017-11-01       Impact factor: 3.416

10.  Methylation profile of a satellite DNA constituting the intercalary G+C-rich heterochromatin of the cut trough shell Spisula subtruncata (Bivalvia, Mactridae).

Authors:  Daniel García-Souto; Brankica Mravinac; Eva Šatović; Miroslav Plohl; Paloma Morán; Juan J Pasantes
Journal:  Sci Rep       Date:  2017-07-31       Impact factor: 4.379

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