| Literature DB >> 25827698 |
Afrose Liaquat, Gul Zareen Asifa, Asyia Zeenat, Qamar Javed1.
Abstract
BACKGROUND AND OBJECTIVES: The tumor necrosis factor-alpha (TNF-a) and interleukin (IL)-6 gene polymorphism has a controversial role in the pathogenesis of cardiovascular disease among different populations. The effect of the cytokine's gene polymorphism on idiopathic dilated cardiomyopathy (IDCM) is still unresolved. The current study aimed to evaluate the association of the TNF-a -308 G/A and IL-6 -174 G/C polymorphism with IDCM in a Pakistani population. DESIGN AND SETTINGS: Blood samples for this case-control study were collected from the cardiology out.patient department of multiple cardiology centers of Rawalpindi/Islamabad, Pakistan, between July 2012 and December 2012. PATIENTS AND METHODS: IDCM cases (number [n]=250) and healthy controls (n=300) were genotyped using polymerase chain reaction and restriction fragment length polymorphism.Entities:
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Year: 2014 PMID: 25827698 PMCID: PMC6074564 DOI: 10.5144/0256-4947.2014.407
Source DB: PubMed Journal: Ann Saudi Med ISSN: 0256-4947 Impact factor: 1.526
Figure 1Agarose gels showing the enzyme-digested patterns of PCR products of TNF-α −308 G/A. Electropherogram of ethidium bromide stained 4% agarose gel showing genotype pattern obtained with Ncol restriction digest at −308 G/A TNF-α polymorphism. Lane L represents 100-bp DNA ladder (Fermentas, Germany) while lane UD refers to the undigested PCR-amplified (134 bp) fragment. The other lanes refer to genotype pattern of samples. Genotypes of the samples are noted at the bottom of figure. Genotypes are characterized as GG (114 bp, 20 bp), GA (134 bp, 114 bp, and 20 bp), and AA (134 bp). On the gel, 20-bp fragments cannot be seen.
Figure 2Agarose gels showing the enzyme-digested patterns of PCR products of IL-6 −174 G/C polymorphism. Electropherogram of ethidium bromide stained 4% agarose gel showing genotype pattern obtained with Nla Ill restriction digest at −174 G/C IL-6 polymorphism. Lane L represents 100-bp DNA ladder (Fermentas, Germany) while lane UD refers to the undigested PCR-amplified (408 bp) fragment. Genotypes of the samples are noted at the bottom of figure. Genotypes are characterized as GG (208 bp, 171 bp, and 29 bp), GC (208 bp, 171 bp, 122 bp, 86 bp and 29 bp), and CC (171 bp, 122 bp, 86 bp, and 29 bp). On the gel, 29-bp fragments cannot be seen. tnf-a −308 g/a and il-6 −174 g/c gene polymo rphisms
Baseline and clinical characteristics of control subjects and IDCM cases.
| Characteristics | Controls (n=300) | Patients (n=250) | |
|---|---|---|---|
|
| |||
| Age (years) | 53.7 (13.4) | 53 (14.7) | .5179 |
| Gender (M/F) | 208/92 | 181/69 | .4884 |
| BMI (kg/m2) | 25.1 (3.3) | 22.7 (2.9) | <.0001 |
| TC (mg/dL) | 167.5 (26.4) | 156.7 (44.7) | .0004 |
| TG (mg/dL) | 149.8 (58.6) | 138.1 (57.3) | .019 |
| LDL-C (mg/dL) | 101.5 (35.8) | 88.8 (37.1) | <.0001 |
| HDL-C (mg/dL) | 40.7 (8.7) | 35.2 (11.5) | <.0001 |
| hs-CRP (mg/L) | 1.11 (0.7) | 4.28 (4.6) | <.0001 |
Notes: Values are given as means (SD). A P value <.05 indicates statistical significance.
P value calculated by Student t test (unpaired).
P value calculated by the chi-square test.
Abbreviations: IDCM: Idiopathic dilated cardiomyopathy; n: number; M: male; F: female; BMI: body mass index; TC: total cholesterol; TG: triglycerides; LDL-C: low-density lipoprotein cholesterol; HDL-C: high-density lipoprotein cholesterol; hs-CRP: high-sensitivity C-reactive protein; SD: standard deviation.
Genotype and allele frequencies of the TNF-α −308 G/A and IL-6 −174 G/C polymorphism in the study population.
| TNF-α | Controls | Patients | OR | 95% CI | |
|---|---|---|---|---|---|
|
| |||||
| GG | 223 (74) | 72 (29) | 7.16 | 4.91–10.44 | <.0001 |
| GA+AA | 77 (26) | 178 (71) | |||
| G | 510 (85) | 293 (59) | 4.00 | 3.00–5.33 | <.0001 |
| A | 90 (15) | 207 (41) | |||
| GG | 252 (84) | 182 (73) | 1.96 | 1.29–2.97 | .0019 |
| GC+CC | 48 (16) | 68 (27) | |||
| G | 544 (91) | 419 (84) | 1.87 | 1.30–2.70 | .0008 |
| C | 56 (9) | 81 (16) | |||
Notes: P value calculated by chi-square test. A P value <.05 indicates statistical significance.
Abbreviations: TNF-α: Tumor necrosis factor-alpha; IL-6: interleukin-6; n: number; OR: odds ratio; CI: confidence interval.
Haplotype analysis of the TNF-α −308 G/A and IL-6 −174 G/C polymorphism in IDCM patients and control subjects.
| TNF-α | Controls | Patients | χ2 | 95% CI | |
|---|---|---|---|---|---|
|
| |||||
| G-G | 461 (77) | 263 (53) | |||
| G-C | 49 (8) | 30 (6) | 0.02 | 1.07 (0.66–1.7) | .868 |
| A-G | 83 (14) | 156 (31) | 60.8 | 3.29 (2.4–4.5) | <.0001 |
| A-C | 7 (1) | 51 (10) | 57.3 | 12.8 (5.7–28.5) | <.0001 |
Notes: P value calculated by chi-square test (Yates corrected). A P value <.05 indicates statistical significance.
Abbreviations: TNF-α: Tumor necrosis factor-alpha; IL-6: interleukin-6; IDCM: idiopathic dilated cardiomyopathy; n: number; CI: confidence interval.
The serum hs-CRP levels in relation to the TNF-α −308 G/A and IL-6 −174 G/C polymorphism in the study population.
| TNF-α | (n=300) | CRP (mg/L) Controls | (n=250) | CRP (mg/L) Patients | |
|---|---|---|---|---|---|
|
| |||||
| GG | (n=223) | 1.08 (0.7) | (n=72) | 2.70 (3.4) | <.0001 |
| GA | (n=64) | 1.11 (0.6) | (n=149) | 4.57 (4.7) | <.0001 |
| AA | (n=13) | 1.59 (0.8) | (n=29) | 6.71 (5.9) | .0034 |
| GG | (n=252) | 1.07 (0.7) | (n=182) | 3.69 (4.4) | <.0001 |
| GC | (n=40) | 1.24 (0.7) | (n=55) | 5.92 (4.9) | <.0001 |
| CC | (n=8) | 1.73 (1.1) | (n=13) | 5.57 (5.5) | .0671 |
Notes: Values are given as mean (SD). P value calculated by student t test (unpaired). P value (<.05) indicates statistical significance.
Abbreviations: hs-CRP: High-sensitivity C-reactive protein; TNF-α: tumor necrosis factor-alpha; IL-6: interleukin-6; n: number; CRP: C-reactive protein.