| Literature DB >> 25827376 |
Leila Noohinejad1, Swastik Mondal1, Sk Imran Ali1, Somnath Dey1, Sander van Smaalen1, Andreas Schönleber1.
Abstract
The co-crystal of phenazine (Phz) and chloranilic acid (H2ca) becomes ferroelectric upon cooling through the loss of inversion symmetry. Further cooling results in the development of an incommensurate ferroelectric phase, followed by a lock-in transition towards a twofold superstructure. Here we present the incommensurately modulated crystal structure of Phz-H2ca at T = 139 K with a symmetry given by the superspace group P2(1)(½ σ(2) ½)0 and σ(2) = 0.5139. The modulation mainly affects the positions of the protons within half of the intermolecular hydrogen bonds that are responsible for the spontaneous polarization in all three low-temperature phases. Evidence for proton transfer in part of the hydrogen bonds is obtained from the correlated dependence on the phase of the modulation of the lengths of bonds involved in resonance stabilization of the acidic anion, and much smaller variations of bond lengths of atoms not involved in the resonance mechanism. Incommensurability is explained as competition between proton transfer favored for single hydrogen bonds on the basis of pKa values and avoiding unfavorable Coulomb repulsion within the lattice of the resulting ionic molecules.Entities:
Keywords: ferroelectric materials; incommensurate structure; protron transfer
Year: 2015 PMID: 25827376 PMCID: PMC4383393 DOI: 10.1107/S2052520615004084
Source DB: PubMed Journal: Acta Crystallogr B Struct Sci Cryst Eng Mater ISSN: 2052-5192
Experimental details
| Crystal data | |
| Chemical formula | C12H8N2C6H2Cl2O4 |
|
| 389.2 |
| Crystal system, superspace group | Monoclinic, |
| Temperature (K) | 139 |
| Wavevector |
|
|
| 12.3720(2), 3.7649(5), 16.8315(2) |
| () | 107.789(7) |
|
| 746.52(14) |
|
| 2 |
| Radiation type | Synchrotron, = 0.56 |
| (mm1) | 0.24 |
| Crystal size (mm) | 0.22 0.13 0.05 |
| Data collection | |
| Diffractometer | Marresearch, mar165 CCD |
| Absorption correction | Empirical (using intensity measurements) |
|
| 0.777, 0.991 |
| No. of measured, independent and observed [ | 25001, 15433, 8092 |
| Main (obs, all) | 5607, 5942 |
| Satellites, first order (obs, all) | 2485, 9491 |
|
| 0.019 |
| (sin /)max (1) | 0.981 |
| Refinement | |
|
| 0.045, 0.071, 2.08 |
| No. of reflections | 15433 |
| No. of parameters | 719 |
| H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
| max, min (e3) | 0.17, 0.02 |
| Absolute structure | 6649 Friedel pairs used in the refinement |
| Absolute structure parameter | 0.5 |
R values for the different structure models
Included are R values for observed (obs; defined by I > 3) and all (all) reflections. Partial R values are given for the group of main and satellite (sat) reflections. Structure model A is based on the low-temperature commensurate structure; model B has been obtained by refinement with arbitrary but small initial values for the modulation amplitudes; and model C is obtained after refinement of the superflip solution.
| Model | A | B | C |
|---|---|---|---|
| GOFobs | 2.78 | 2.78 | 2.79 |
|
| 0.0449 | 0.0449 | 0.0451 |
|
| 0.0411 | 0.0412 | 0.0411 |
|
| 0.1268 | 0.1266 | 0.1301 |
| GOFall | 2.08 | 2.08 | 2.08 |
|
| 0.0720 | 0.0718 | 0.0720 |
|
| 0.0425 | 0.0425 | 0.0425 |
|
| 0.3661 | 0.3634 | 0.3663 |
| No. of parameters | 719 | 719 | 719 |
Figure 1Phenazine C12H8N2 and chloranilic acid C6Cl2H2O4 with the atom labels as employed in the present work.
Figure 2Interatomic distances (Å) as a function of phase t of the modulation. The t plot for model B (in blue) is superimposed onto the t plot for model A (in black), after application of a phase shift of −0.5139 in t to model B.
Geometry of the intermolecular hydrogen bonds O1H1o1N1 and O2H1o2N2 at different temperatures corresponding to the FE-I, FE-IC and FE-II phases, respectively
Interatomic distances are given in and bond angles in degrees. (Maxmin) provides the difference between the maximum (max) and minimum (min) separation depending on the phase t of the modulation in the FE-IC phase. The mean gives the value averaged over t. Standard uncertainties are given in parentheses.
| 170 K | 139K | 100K | ||
|---|---|---|---|---|
| Distance | Distance | Maxmin | Distance | |
| O1H1o1 | 1.02(4) | 1.44(2) (mean) | 0.25 | 0.943(15) (A) |
| 1.32(2) (min) | 1.609(15) (B) | |||
| 1.57(2) (max) | 1.066(14) (C) | |||
| 1.467(14) (D) | ||||
| O2H1o2 | 0.73(2) | 0.91(2) (mean) | 0.06 | 0.863(15) (A) |
| 0.88(2) (min) | 0.796(15) (B) | |||
| 0.94(2) (max) | 0.840(14) (C) | |||
| 0.815(13) (D) | ||||
| H1o1N1i | 1.66(4) | 1.320(14) (mean) | 0.42 | 1.879(15) (A) |
| 1.11(2) (min) | 1.027(15) (B) | |||
| 1.53(2) (max) | 1.700(14) (C) | |||
| 1.205(14) (D) | ||||
| H1o2N2ii | 2.15(2) | 1.945(2) (mean) | 0.05 | 1.908(14) (A) |
| 1.92(2) (min) | 2.121(14) (B) | |||
| 1.97(2) (max) | 1.944(14) (C) | |||
| 2.084(14) (D) | ||||
| O1N1i | 2.6446(16) | 2.629(2) (mean) | 0.07 | 2.6976(14) (A) |
| 2.586(2) (min) | 2.5736(14) (B) | |||
| 2.672(2) (max) | 2.5974(42) (D) | |||
| 2.6726(14) (C) | ||||
| O2N2ii | 2.7722(16) | 2.763(2) (mean) | 0.09 | 2.7086(15) (A) |
| 2.715(3) (min) | 2.8251(15) (B) | |||
| 2.811(3) (max) | 2.7264(15) (C) | |||
| 2.8062(15) (D) | ||||
| O1H1o1N1i | 159(3) | 144.8(15) (mean) | 9.9 | 143.8(11) (A) |
| 139.5(14) (min) | 154.4(11) (B) | |||
| 149.7(16) (max) | 149.3(10) (C) | |||
| 152.6(10) (D) | ||||
| O2H1o2N2ii | 145(2) | 149.2(18) (mean) | 5.4 | 153.7(11) (A) |
| 146.4(17) (min) | 147.5(12) (B) | |||
| 152.0(18) (max) | 154.5(11) (C) | |||
| 147.60(12) (D) | ||||
Symmetry codes for N1 and N2 in the structure model at T = 139K are: (i) ; (ii) .
From Gotoh et al. (2007 ▶).
From Noohinejad et al. (2014 ▶); the labels A, B, C and D refer to the four molecular chains, which have become independent in the crystal structure at low temperatures.
Figure 3Selected interatomic distances (Å) as a function of phase t of the modulation. (a) The O—H and N—H distances within the two hydrogen bonds. (b) C—C and C—O distances of the resonance system stabilizing the Hca− anion, as well as the C6—O2 distance not involved in resonance. Notice the different length scale on the vertical axes for panels (a) and (b).
Selected bond lengths () at different temperatures corresponding to the FE-I, FE-IC and FE-II phases, respectively
(Maxmin) provides the difference between maximum (max) and minimum (min) separation depending on phase t of the modulation in the FE-IC phase. The mean gives the value averaged over t. Standard uncertainties are given in parentheses.
| 170K | 139K | 100K | ||
|---|---|---|---|---|
| Distance | Distance | Maxmin | Distance | |
| C3O1 | 1.2923(13) | 1.281(2) (mean) | 0.060 | 1.3200(14) (A) |
| 1.251(2) (min) | 1.2536(14) (B) | |||
| 1.311(2) (max) | 1.3054(14) (C) | |||
| 1.2676(14) (D) | ||||
| C6O2 | 1.3204(13) | 1.312(3) (mean) | 0.004 | 1.3133(15) (A) |
| 1.310(2) (min) | 1.3204(15) (B) | |||
| 1.314(2) (max) | 1.3118(14) (C) | |||
| 1.3214(14) (D) | ||||
| C4O3 | 1.2269(15) | 1.219(2) (mean) | 0.008 | 1.2243(14) (A) |
| 1.215(2) (min) | 1.2211(14) (B) | |||
| 1.223(2) (max) | 1.2248(14) (C) | |||
| 1.2201(14) (D) | ||||
| C1O4 | 1.2291(15) | 1.221(2) (mean) | 0.026 | 1.2183(14) (A) |
| 1.208(2) (min) | 1.2385(14) (B) | |||
| 1.234(2) (max) | 1.2210(14) (C) | |||
| 1.2355(14) (D) | ||||
| C1C2 | 1.4404(15) | 1.428(3) (mean) | 0.043 | 1.4590(8) (A) |
| 1.406(3) (min) | 1.4114(7) (B) | |||
| 1.449(3) (max) | 1.4496(8) (C) | |||
| 1.4207(8) (D) | ||||
| C2C3 | 1.3713(16) | 1.372(3) (mean) | 0.047 | 1.3517(9) (A) |
| 1.349(3) (min) | 1.3949(9) (B) | |||
| 1.396(3) (max) | 1.3622(9) (C) | |||
| 1.3843(9) (D) | ||||
| N1C12 | 1.3493(13) | 1.342(2) (mean) | 0.006 | 1.3451(11) (A) |
| 1.339(2) (min) | 1.3465(11) (B) | |||
| 1.345(2) (max) | 1.3468(14) (C) | |||
| 1.3443(12) (D) | ||||
| N1C17 | 1.3472(17) | 1.344(2) (mean) | 0.005 | 1.3490(14) (A) |
| 1.342(2) (min) | 1.3505(14) (B) | |||
| 1.347(2) (max) | 1.3464(14) (C) | |||
| 1.3526(14) (D) | ||||
From Gotoh et al. (2007 ▶).
From Noohinejad et al. (2014 ▶).
Figure 4Schematic representation of resonance within the anion Hca− of chloranilic acid.