Literature DB >> 25825778

Molecular cartography of the human skin surface in 3D.

Amina Bouslimani1, Carla Porto1, Christopher M Rath1, Mingxun Wang2, Yurong Guo3, Antonio Gonzalez4, Donna Berg-Lyon4, Gail Ackermann4, Gitte Julie Moeller Christensen5, Teruaki Nakatsuji6, Lingjuan Zhang6, Andrew W Borkowski6, Michael J Meehan1, Kathleen Dorrestein1, Richard L Gallo6, Nuno Bandeira7, Rob Knight8, Theodore Alexandrov9, Pieter C Dorrestein10.   

Abstract

The human skin is an organ with a surface area of 1.5-2 m(2) that provides our interface with the environment. The molecular composition of this organ is derived from host cells, microbiota, and external molecules. The chemical makeup of the skin surface is largely undefined. Here we advance the technologies needed to explore the topographical distribution of skin molecules, using 3D mapping of mass spectrometry data and microbial 16S rRNA amplicon sequences. Our 3D maps reveal that the molecular composition of skin has diverse distributions and that the composition is defined not only by skin cells and microbes but also by our daily routines, including the application of hygiene products. The technological development of these maps lays a foundation for studying the spatial relationships of human skin with hygiene, the microbiota, and environment, with potential for developing predictive models of skin phenotypes tailored to individual health.

Entities:  

Keywords:  16S rRNA; 3D mapping; human skin; mass spectrometry

Mesh:

Substances:

Year:  2015        PMID: 25825778      PMCID: PMC4418856          DOI: 10.1073/pnas.1424409112

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  43 in total

1.  Intracutaneous injection of lysophosphatidylcholine induces skin inflammation and accumulation of leukocytes.

Authors:  A K Ryborg; B Deleuran; H Søgaard; K Kragballe
Journal:  Acta Derm Venereol       Date:  2000 Jul-Aug       Impact factor: 4.437

Review 2.  Cutaneous defense mechanisms by antimicrobial peptides.

Authors:  Marissa H Braff; Antoanella Bardan; Victor Nizet; Richard L Gallo
Journal:  J Invest Dermatol       Date:  2005-07       Impact factor: 8.551

Review 3.  Dialogue between skin microbiota and immunity.

Authors:  Yasmine Belkaid; Julia A Segre
Journal:  Science       Date:  2014-11-21       Impact factor: 47.728

4.  Defensins and acne.

Authors:  Michael P Philpott
Journal:  Mol Immunol       Date:  2003-11       Impact factor: 4.407

Review 5.  Alpha-defensins in the gastrointestinal tract.

Authors:  R N Cunliffe
Journal:  Mol Immunol       Date:  2003-11       Impact factor: 4.407

Review 6.  Phosphatidylcholine breakdown and signal transduction.

Authors:  J H Exton
Journal:  Biochim Biophys Acta       Date:  1994-04-14

7.  Increased lysophosphatidylcholine content in lesional psoriatic skin.

Authors:  A K Ryborg; B Grøn; K Kragballe
Journal:  Br J Dermatol       Date:  1995-09       Impact factor: 9.302

Review 8.  Cosmetics: what is their influence on the skin microflora?

Authors:  Keith T Holland; Richard A Bojar
Journal:  Am J Clin Dermatol       Date:  2002       Impact factor: 7.403

Review 9.  Microbiology of the skin: resident flora, ecology, infection.

Authors:  R R Roth; W D James
Journal:  J Am Acad Dermatol       Date:  1989-03       Impact factor: 11.527

10.  UniFrac: a new phylogenetic method for comparing microbial communities.

Authors:  Catherine Lozupone; Rob Knight
Journal:  Appl Environ Microbiol       Date:  2005-12       Impact factor: 4.792

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  120 in total

Review 1.  Miniature and Fieldable Mass Spectrometers: Recent Advances.

Authors:  Dalton T Snyder; Christopher J Pulliam; Zheng Ouyang; R Graham Cooks
Journal:  Anal Chem       Date:  2015-10-21       Impact factor: 6.986

2.  Microbiome Variation Across Amphibian Skin Regions: Implications for Chytridiomycosis Mitigation Efforts.

Authors:  Arnaud Bataille; Larisa Lee-Cruz; Binu Tripathi; Hyoki Kim; Bruce Waldman
Journal:  Microb Ecol       Date:  2015-08-15       Impact factor: 4.552

Review 3.  The Landscape Ecology and Microbiota of the Human Nose, Mouth, and Throat.

Authors:  Diana M Proctor; David A Relman
Journal:  Cell Host Microbe       Date:  2017-04-12       Impact factor: 21.023

4.  Skin Metabolite, Farnesyl Pyrophosphate, Regulates Epidermal Response to Inflammation, Oxidative Stress, and Migration.

Authors:  Irena Pastar; Olivera Stojadinovic; Andrew P Sawaya; Rivka C Stone; Linsey E Lindley; Nkemcho Ojeh; Sasa Vukelic; Herbert H Samuels; Marjana Tomic-Canic
Journal:  J Cell Physiol       Date:  2016-03-09       Impact factor: 6.384

5.  Identification of a Human Skin Commensal Bacterium that Selectively Kills Cutibacterium acnes.

Authors:  Alan M O'Neill; Teruaki Nakatsuji; Asumi Hayachi; Michael R Williams; Robert H Mills; David J Gonzalez; Richard L Gallo
Journal:  J Invest Dermatol       Date:  2020-01-23       Impact factor: 8.551

6.  Mass Spectrometry in Cosmetic Science: Advanced Ionization Techniques for Detecting Trace Molecules in or on Human Skin.

Authors:  Akira Motoyama; Keishi Kihara
Journal:  Mass Spectrom (Tokyo)       Date:  2017-09-22

7.  Skin molecule maps using mass spectrometry.

Authors:  R Graham Cooks; Alan K Jarmusch; Christina R Ferreira; Valentina Pirro
Journal:  Proc Natl Acad Sci U S A       Date:  2015-04-20       Impact factor: 11.205

Review 8.  Natural product discovery from the human microbiome.

Authors:  Matthew R Wilson; Li Zha; Emily P Balskus
Journal:  J Biol Chem       Date:  2017-04-07       Impact factor: 5.157

9.  Lifestyle chemistries from phones for individual profiling.

Authors:  Amina Bouslimani; Alexey V Melnik; Zhenjiang Xu; Amnon Amir; Ricardo R da Silva; Mingxun Wang; Nuno Bandeira; Theodore Alexandrov; Rob Knight; Pieter C Dorrestein
Journal:  Proc Natl Acad Sci U S A       Date:  2016-11-14       Impact factor: 11.205

10.  How to Apply Supervised Machine Learning Tools to MS Imaging Files: Case Study with Cancer Spheroids Undergoing Treatment with the Monoclonal Antibody Cetuximab.

Authors:  David Hua; Xin Liu; Eden P Go; Yijia Wang; Amanda B Hummon; Heather Desaire
Journal:  J Am Soc Mass Spectrom       Date:  2020-06-10       Impact factor: 3.109

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