Literature DB >> 25825429

A Homology Model Reveals Novel Structural Features and an Immunodominant Surface Loop/Opsonic Target in the Treponema pallidum BamA Ortholog TP_0326.

Amit Luthra1, Arvind Anand1, Kelly L Hawley2, Morgan LeDoyt1, Carson J La Vake2, Melissa J Caimano3, Adriana R Cruz4, Juan C Salazar5, Justin D Radolf6.   

Abstract

UNLABELLED: We recently demonstrated that TP_0326 is a bona fide rare outer membrane protein (OMP) in Treponema pallidum and that it possesses characteristic BamA bipartite topology. Herein, we used immunofluorescence analysis (IFA) to show that only the β-barrel domain of TP_0326 contains surface-exposed epitopes in intact T. pallidum. Using the solved structure of Neisseria gonorrhoeae BamA, we generated a homology model of full-length TP_0326. Although the model predicts a typical BamA fold, the β-barrel harbors features not described in other BamAs. Structural modeling predicted that a dome comprised of three large extracellular loops, loop 4 (L4), L6, and L7, covers the barrel's extracellular opening. L4, the dome's major surface-accessible loop, contains mainly charged residues, while L7 is largely neutral and contains a polyserine tract in a two-tiered conformation. L6 projects into the β-barrel but lacks the VRGF/Y motif that anchors L6 within other BamAs. IFA and opsonophagocytosis assay revealed that L4 is surface exposed and an opsonic target. Consistent with B cell epitope predictions, immunoblotting and enzyme-linked immunosorbent assay (ELISA) confirmed that L4 is an immunodominant loop in T. pallidum-infected rabbits and humans with secondary syphilis. Antibody capture experiments using Escherichia coli expressing OM-localized TP_0326 as a T. pallidum surrogate further established the surface accessibility of L4. Lastly, we found that a naturally occurring substitution (Leu(593) → Gln(593)) in the L4 sequences of T. pallidum strains affects antibody binding in sera from syphilitic patients. Ours is the first study to employ a "structure-to-pathogenesis" approach to map the surface topology of a T. pallidum OMP within the context of syphilitic infection. IMPORTANCE: Previously, we reported that TP_0326 is a bona fide rare outer membrane protein (OMP) in Treponema pallidum and that it possesses the bipartite topology characteristic of a BamA ortholog. Using a homology model as a guide, we found that TP_0326 displays unique features which presumably relate to its function(s) in the biogenesis of T. pallidum's unorthodox OM. The model also enabled us to identify an immunodominant epitope in a large extracellular loop that is both an opsonic target and subject to immune pressure in a human population. Ours is the first study to follow a structure-to-pathogenesis approach to map the surface topology of a T. pallidum rare OMP within the context of syphilitic infection.
Copyright © 2015, American Society for Microbiology. All Rights Reserved.

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Year:  2015        PMID: 25825429      PMCID: PMC4420902          DOI: 10.1128/JB.00086-15

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  58 in total

Review 1.  Evolution of the β-barrel assembly machinery.

Authors:  Chaille T Webb; Eva Heinz; Trevor Lithgow
Journal:  Trends Microbiol       Date:  2012-09-06       Impact factor: 17.079

2.  Dissection of β-barrel outer membrane protein assembly pathways through characterizing BamA POTRA 1 mutants of Escherichia coli.

Authors:  Drew Bennion; Emily S Charlson; Eric Coon; Rajeev Misra
Journal:  Mol Microbiol       Date:  2010-09       Impact factor: 3.501

3.  Clustered syk tyrosine kinase domains trigger phagocytosis.

Authors:  S Greenberg; P Chang; D C Wang; R Xavier; B Seed
Journal:  Proc Natl Acad Sci U S A       Date:  1996-02-06       Impact factor: 11.205

Review 4.  Genetic diversity in Treponema pallidum: implications for pathogenesis, evolution and molecular diagnostics of syphilis and yaws.

Authors:  David Smajs; Steven J Norris; George M Weinstock
Journal:  Infect Genet Evol       Date:  2011-12-15       Impact factor: 3.342

5.  Reactivity of antibodies from syphilis patients to a protein array representing the Treponema pallidum proteome.

Authors:  Mary Beth Brinkman; Matthew McKevitt; Melanie McLoughlin; Carla Perez; Jerrilyn Howell; George M Weinstock; Steven J Norris; Timothy Palzkill
Journal:  J Clin Microbiol       Date:  2006-03       Impact factor: 5.948

6.  Structure of BamA, an essential factor in outer membrane protein biogenesis.

Authors:  Reinhard Albrecht; Monika Schütz; Philipp Oberhettinger; Michaela Faulstich; Ivan Bermejo; Thomas Rudel; Kay Diederichs; Kornelius Zeth
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2014-05-30

7.  Current status of syphilis vaccine development: need, challenges, prospects.

Authors:  Caroline E Cameron; Sheila A Lukehart
Journal:  Vaccine       Date:  2013-10-14       Impact factor: 3.641

8.  Phagocytosis of Borrelia burgdorferi, the Lyme disease spirochete, potentiates innate immune activation and induces apoptosis in human monocytes.

Authors:  Adriana R Cruz; Meagan W Moore; Carson J La Vake; Christian H Eggers; Juan C Salazar; Justin D Radolf
Journal:  Infect Immun       Date:  2007-10-15       Impact factor: 3.441

9.  Structural insight into the biogenesis of β-barrel membrane proteins.

Authors:  Nicholas Noinaj; Adam J Kuszak; James C Gumbart; Petra Lukacik; Hoshing Chang; Nicole C Easley; Trevor Lithgow; Susan K Buchanan
Journal:  Nature       Date:  2013-09-01       Impact factor: 49.962

10.  Reliable B cell epitope predictions: impacts of method development and improved benchmarking.

Authors:  Jens Vindahl Kringelum; Claus Lundegaard; Ole Lund; Morten Nielsen
Journal:  PLoS Comput Biol       Date:  2012-12-27       Impact factor: 4.475

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  15 in total

Review 1.  The Treponema pallidum Outer Membrane.

Authors:  Justin D Radolf; Sanjiv Kumar
Journal:  Curr Top Microbiol Immunol       Date:  2018       Impact factor: 4.291

Review 2.  Treponema pallidum, the syphilis spirochete: making a living as a stealth pathogen.

Authors:  Justin D Radolf; Ranjit K Deka; Arvind Anand; David Šmajs; Michael V Norgard; X Frank Yang
Journal:  Nat Rev Microbiol       Date:  2016-10-10       Impact factor: 60.633

3.  Characterization of Treponema denticola Major Surface Protein (Msp) by Deletion Analysis and Advanced Molecular Modeling.

Authors:  M Paula Goetting-Minesky; Valentina Godovikova; Wei Zheng; J Christopher Fenno
Journal:  J Bacteriol       Date:  2022-08-01       Impact factor: 3.476

Review 4.  Syphilis.

Authors:  Rosanna W Peeling; David Mabey; Mary L Kamb; Xiang-Sheng Chen; Justin D Radolf; Adele S Benzaken
Journal:  Nat Rev Dis Primers       Date:  2017-10-12       Impact factor: 52.329

Review 5.  Novel Treponema pallidum Recombinant Antigens for Syphilis Diagnostics: Current Status and Future Prospects.

Authors:  Aleksey Kubanov; Anastassia Runina; Dmitry Deryabin
Journal:  Biomed Res Int       Date:  2017-04-24       Impact factor: 3.411

6.  Characterizing the Syphilis-Causing Treponema pallidum ssp. pallidum Proteome Using Complementary Mass Spectrometry.

Authors:  Kara K Osbak; Simon Houston; Karen V Lithgow; Conor J Meehan; Michal Strouhal; David Šmajs; Caroline E Cameron; Xaveer Van Ostade; Chris R Kenyon; Geert A Van Raemdonck
Journal:  PLoS Negl Trop Dis       Date:  2016-09-08

7.  Needle lost in the haystack: multiple reaction monitoring fails to detect Treponema pallidum candidate protein biomarkers in plasma and urine samples from individuals with syphilis.

Authors:  Geert A Van Raemdonck; Kara K Osbak; Xaveer Van Ostade; Chris R Kenyon
Journal:  F1000Res       Date:  2018-03-19

8.  Analysis of host cell binding specificity mediated by the Tp0136 adhesin of the syphilis agent Treponema pallidum subsp. pallidum.

Authors:  Vitomir Djokic; Lorenzo Giacani; Nikhat Parveen
Journal:  PLoS Negl Trop Dis       Date:  2019-05-09

9.  IFNγ Enhances CD64-Potentiated Phagocytosis of Treponema pallidum Opsonized with Human Syphilitic Serum by Human Macrophages.

Authors:  Kelly L Hawley; Adriana R Cruz; Sarah J Benjamin; Carson J La Vake; Jorge L Cervantes; Morgan LeDoyt; Lady G Ramirez; Daniza Mandich; Mary Fiel-Gan; Melissa J Caimano; Justin D Radolf; Juan C Salazar
Journal:  Front Immunol       Date:  2017-10-05       Impact factor: 7.561

10.  Sequence Variation of Rare Outer Membrane Protein β-Barrel Domains in Clinical Strains Provides Insights into the Evolution of Treponema pallidum subsp. pallidum, the Syphilis Spirochete.

Authors:  Sanjiv Kumar; Melissa J Caimano; Arvind Anand; Abhishek Dey; Kelly L Hawley; Morgan E LeDoyt; Carson J La Vake; Adriana R Cruz; Lady G Ramirez; Lenka Paštěková; Irina Bezsonova; David Šmajs; Juan C Salazar; Justin D Radolf
Journal:  MBio       Date:  2018-06-12       Impact factor: 7.867

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