Literature DB >> 25823682

Spermatozoa input concentrations and RNA isolation methods on RNA yield and quality in bull (Bos taurus).

Sivashanmugam Parthipan1, Sellappan Selvaraju2, Lakshminarayana Somashekar1, Atul P Kolte3, Arunachalam Arangasamy4, Janivara Parameswaraiah Ravindra4.   

Abstract

Sperm RNA can be used to understand the past spermatogenic process, future successful fertilization, and embryo development. To study the sperm RNA composition and function, isolation of good quality RNA with sufficient quantity is essential. The objective of this study was to assess the influence of sperm input concentrations and RNA isolation methods on RNA yield and quality in bull sperm. The fresh semen samples from bulls (n = 6) were snap-frozen in liquid nitrogen and stored at -80 °C. The sperm RNA was isolated using membrane-based methods combined with TRIzol (RNeasy+TRIzol and PureLink+TRIzol) and conventional methods (TRIzol, Double TRIzol, and RNAzol RT). Based on fluorometric quantification, combined methods resulted in significantly (P < 0.05) higher total RNA yields (800-900 ng/30-40 × 10(6)) as compared with other methods and yielded 20 to 30 fg of RNA/spermatozoon. The quality of RNA isolated by membrane-based methods was superior to that isolated by conventional methods. The sperm RNA was observed to be intact as well as fragmented (50-2000 bp). The study revealed that the membrane-based methods with a cocktail of lysis solution and an optimal input concentration of 30 to 40 million sperm were optimal for maximum recovery of RNA from bull spermatozoa.
Copyright © 2015 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Bull; RNA isolation; RNA quality; RNA yield; Spermatozoa

Mesh:

Substances:

Year:  2015        PMID: 25823682     DOI: 10.1016/j.ab.2015.03.022

Source DB:  PubMed          Journal:  Anal Biochem        ISSN: 0003-2697            Impact factor:   3.365


  10 in total

1.  EGF, GDNF, and IGF-1 influence the proliferation and stemness of ovine spermatogonial stem cells in vitro.

Authors:  B K Binsila; S Selvaraju; S K Ghosh; L Ramya; A Arangasamy; R Ranjithkumaran; R Bhatta
Journal:  J Assist Reprod Genet       Date:  2020-08-21       Impact factor: 3.412

2.  Occurrence and functional significance of the transcriptome in bovine (Bos taurus) spermatozoa.

Authors:  Sellappan Selvaraju; Sivashanmugam Parthipan; Lakshminarayana Somashekar; Atul P Kolte; B Krishnan Binsila; Arunachalam Arangasamy; Janivara Parameshwaraiah Ravindra
Journal:  Sci Rep       Date:  2017-03-09       Impact factor: 4.379

3.  RNA-Seq analysis reveals functionally relevant coding and non-coding RNAs in crossbred bull spermatozoa.

Authors:  Mani Arul Prakash; Arumugam Kumaresan; Manish Kumar Sinha; Elango Kamaraj; Tushar Kumar Mohanty; Tirtha Kumar Datta; Jane M Morrell
Journal:  Anim Reprod Sci       Date:  2020-10-10       Impact factor: 2.145

4.  Single-molecule long-read sequencing reveals a conserved intact long RNA profile in sperm.

Authors:  Yu H Sun; Anqi Wang; Chi Song; Goutham Shankar; Rajesh K Srivastava; Kin Fai Au; Xin Zhiguo Li
Journal:  Nat Commun       Date:  2021-03-01       Impact factor: 14.919

5.  Deep Metabolomic Profiling Reveals Alterations in Fatty Acid Synthesis and Ketone Body Degradations in Spermatozoa and Seminal Plasma of Astheno-Oligozoospermic Bulls.

Authors:  Mohua Dasgupta; Arumugam Kumaresan; Kaustubh Kishor Saraf; Pradeep Nag; Manish Kumar Sinha; Muhammad Aslam M K; Gayathree Karthikkeyan; T S Keshava Prasad; Prashant Kumar Modi; Tirtha Kumar Datta; Kerekoppa Ramesha; Ayyasamy Manimaran; Sakthivel Jeyakumar
Journal:  Front Vet Sci       Date:  2022-01-11

6.  Divergence Analyses of Sperm DNA Methylomes between Monozygotic Twin AI Bulls.

Authors:  Shuli Liu; Siqian Chen; Wentao Cai; Hongwei Yin; Aoxing Liu; Yanhua Li; George E Liu; Yachun Wang; Ying Yu; Shengli Zhang
Journal:  Epigenomes       Date:  2019-09-26

7.  SpermBase: A Database for Sperm-Borne RNA Contents.

Authors:  Andrew Schuster; Chong Tang; Yeming Xie; Nicole Ortogero; Shuiqiao Yuan; Wei Yan
Journal:  Biol Reprod       Date:  2016-09-14       Impact factor: 4.285

8.  Characterization and functional roles of paternal RNAs in 2-4 cell bovine embryos.

Authors:  Nicole Gross; Maria Giuseppina Strillacci; Francisco Peñagaricano; Hasan Khatib
Journal:  Sci Rep       Date:  2019-12-30       Impact factor: 4.379

9.  Comparative Transcriptomic Analysis of Spermatozoa From High- and Low-Fertile Crossbred Bulls: Implications for Fertility Prediction.

Authors:  Mani Arul Prakash; Arumugam Kumaresan; John Peter Ebenezer Samuel King; Pradeep Nag; Ankur Sharma; Manish Kumar Sinha; Elango Kamaraj; Tirtha Kumar Datta
Journal:  Front Cell Dev Biol       Date:  2021-05-10

10.  Sperm Transcripts Associated With Odorant Binding and Olfactory Transduction Pathways Are Altered in Breeding Bulls Producing Poor-Quality Semen.

Authors:  Thirumalaisamy Karuthadurai; Dayal Nitai Das; Arumugam Kumaresan; Manish Kumar Sinha; Elango Kamaraj; Pradeep Nag; John Peter Ebenezer Samuel King; Tirtha Kumar Datta; Ayyasamy Manimaran; Sakthivel Jeyakumar; Kerekoppa Ramesha
Journal:  Front Vet Sci       Date:  2022-02-22
  10 in total

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