Literature DB >> 25815779

Site-specific analysis of protein hydration based on unnatural amino acid fluorescence.

Mariana Amaro1, Jan Brezovský2,3, Silvia Kováčová4,3, Jan Sýkora1, David Bednář2,3, Václav Němec4,3, Veronika Lišková2, Nagendra Prasad Kurumbang2, Koen Beerens2, Radka Chaloupková2, Kamil Paruch4,3, Martin Hof1, Jiří Damborský2,3.   

Abstract

Hydration of proteins profoundly affects their functions. We describe a simple and general method for site-specific analysis of protein hydration based on the in vivo incorporation of fluorescent unnatural amino acids and their analysis by steady-state fluorescence spectroscopy. Using this method, we investigate the hydration of functionally important regions of dehalogenases. The experimental results are compared to findings from molecular dynamics simulations.

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Year:  2015        PMID: 25815779     DOI: 10.1021/jacs.5b01681

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  4 in total

1.  Translocation of small molecules through engineered outer-membrane channels from Gram-negative bacteria.

Authors:  Rémi Terrasse; Mathias Winterhalter
Journal:  Eur Phys J E Soft Matter       Date:  2018-09-24       Impact factor: 1.890

2.  Mechanism-Based Strategy for Optimizing HaloTag Protein Labeling.

Authors:  Sérgio M Marques; Michaela Slanska; Klaudia Chmelova; Radka Chaloupkova; Martin Marek; Spencer Clark; Jiri Damborsky; Eric T Kool; David Bednar; Zbynek Prokop
Journal:  JACS Au       Date:  2022-05-18

3.  Solvatochromic fluorene-linked nucleoside and DNA as color-changing fluorescent probes for sensing interactions.

Authors:  Dmytro Dziuba; Petr Pospíšil; Ján Matyašovský; Jiří Brynda; Dana Nachtigallová; Lubomír Rulíšek; Radek Pohl; Martin Hof; Michal Hocek
Journal:  Chem Sci       Date:  2016-06-21       Impact factor: 9.825

4.  Biomolecular simulation based machine learning models accurately predict sites of tolerability to the unnatural amino acid acridonylalanine.

Authors:  Sam Giannakoulias; Sumant R Shringari; John J Ferrie; E James Petersson
Journal:  Sci Rep       Date:  2021-09-15       Impact factor: 4.379

  4 in total

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