| Literature DB >> 25815595 |
Saadullah G Aziz1, Abdulrahman O Alyoubi2, Shaaban A Elroby3,4, Osman I Osman5, Rifaat H Hilal6,7.
Abstract
The present study aims at a fundamental understanding of bonding characteristics of the C-Br and O-Br bonds. The target molecular systems are the isomeric CH3OBr/BrCH2OH system and their decomposition products. Calculations of geometries and frequencies at different density functional theory (DFT) and Hartree-Fock/Møller-Plesset (HF/MP2) levels have been performed. Results have been assessed and evaluated against those obtained at the coupled cluster single-double (Triplet) (CCSD(T)) level of theory. The characteristics of the C-Br and O-Br bonds have been identified via analysis of the electrostatic potential, natural bond orbital (NBO), and quantum theory of atoms in molecules (QTAIM). Analysis of the electrostatic potential (ESP) maps enabled the quantitative characterization of the Br σ-holes. Its magnitude seems very sensitive to the environment and the charge accumulated in the adjacent centers. Some quantum topological parameters, namely Ñ2ρ, ellipticity at bond critical points and the Laplacian bond order, were computed and discussed. The potential energy function for internal rotation has been computed and Fourier transformed to characterize the conformational preferences and origin of the barriers. NBO energetic components for rotation about the C-Br and O-Br bonds as a function of torsion angle have been computed and displayed.Entities:
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Year: 2015 PMID: 25815595 PMCID: PMC4424987 DOI: 10.3390/ijms16046783
Source DB: PubMed Journal: Int J Mol Sci ISSN: 1422-0067 Impact factor: 5.923
Figure 1The optimized geometric structure and atom labeling of cis-BrOCH (I); trans-BrOCH (II); BrCHO (III); BrCH2OH (IV); CH3OBr (V); and CH3BrO (VI).
CCSD(T) total energies (au) computed using different basis sets for the studied isomer bromine containing systems.
| Model | I | II | III | IV | V | VI |
|---|---|---|---|---|---|---|
| aug-cc-pVDZ | −2686.10959 | −2686.09582 | −2687.40968 | −2687.40968 | −2687.35216 | −2687.27657 |
| aug-cc-PVTZ | −2686.37221 (−2686.35370) | −2686.35838 (−2686.34045) | −2687.68607 (−2686.45778) | −2687.68607 (−2687.66428) | −2687.62962 (−2687.60696) | −26875.62997 (−2687.53326) |
| aug-cc-pVQZ | −2686.47047 | −2686.45571 | −26877.86817 | −2687.78682 | −2687.72951 | −2687.66377 |
| CBS | −2686.50733 | −2686.49332 | −2686.61433 | −2687.82633 | −2687.77034 | −2687.70635 |
Figure 2Comparison of the geometric features of the idealized PG and DFT optimized structure (Opt) for the isomeric system CH3OBr/CH3BrO/BrCH2OH.
NBO analyses of the total SCF energy (au), deletion (au) and delocalization (kcal/mol) energies of the studied bromine-containing species computed at the B3LYP/aug-cc-pVTZ level of theory.
| Substrate | Total SCF Energy | Deletion Energy | Delocalization Energy | Rotation Barrier, kcal/mol |
|---|---|---|---|---|
| I | −2688.09805 | −2682.98976 | 3205.503 | |
| II | −2688.08126 | −2683.11274 | 3117.798 | |
| III | −2688.19984 | −2687.94231 | 161.600 | |
| IV | −2689.41115 | −2689.18759 | 140.285 | 42.406 |
| V | −2689.35579 | −2689.22576 | 81.596 | 2.749 |
| VI | −2689.28797 | −2689.10615 | 114.097 | 0.763 |
Figure 3Fourier decomposition of the potential function for rotation about the C–Br bond in CH3BrO.
Vibrational Frequencies and Intensities (km/mol) for the studied bromine-containing compounds.
| Species | ν, cm−1 | Relative Intensity | νanharmonic, cm−1 | Relative Intensity (Anharmonic) | Assignment |
|---|---|---|---|---|---|
| 1924.6 (2068) a | 601.1 | 1905.218 | 613 | C–O str. | |
| 196.8 (206) a | 65.3 | 197.912 | 59 | O–Br str. | |
| 292.2 (348) a | 13.0 | 293.888 | 13 | Br–O–C angle bending | |
| 1979.7 | 588.5 | 1957.464 | 590 | C–O str. | |
| 161.6 | 71.44 | 157.284 | 62 | O–Br str. | |
| 253.8 | 86.2 | 221.901 | 97 | Br–O–C angle bending | |
| BrCHO (III) | 1851.0 (1799) a | 466 | 1836.751 | 484 | C–O str. |
| 633.1 (663) a | 168 | 626.148 | 172 | C–Br str. | |
| 351.5 (370) a | 13 | 350.071 | 14 | O–C–Br angle bending | |
| BrCH2OH (IV) | 1102.7 (1126) a | 286.1 | 1069.0 | 299 | C–O str. |
| 560.5 (625) a | 107 | 549.1 | 129 | C–Br str. | |
| 284.0 (306) a | 37 | 290.0 | 22 | O–C–Br angle bendin | |
| CH3OBr (V) | 1054.4 (1048) a | 63.2 | 1466.6 | 11 | C–O str. |
| 998,1 (581) a | 40 | 967.0 | 38 | O–Br str. | |
| 307.1 (319) a | 3 | 303.5 | 4 | C–O–Br angle bending | |
| CH3BrO (VI) | 657.3 (723) b | 40.1 | 648.6 | 31 | Br–O str. |
| 516.7 (530) b | 1.9 | 505.6 | 2 | C–Br str. | |
| 207.7 (222) b | 5.5 | 208.0 | 6 | C–Br–O angle bending |
a reference [15]; b reference [20].
Second order perturbation (E(2)) estimation of the hyperconjugative energies (kcal/mol) of cis-BrOCH (I), trans-BrOCH (II), and BrCHO (III) which were calculated using B3LYP/aug-cc-pVTZ level of theory.
| Interaction | I | II | III |
|---|---|---|---|
| σC1–H2→n2O4 | 6.58 | 9.74 | – |
| σC1–H2→σ*C1–Br3 | 7.71 | 8.27 | 3.52 |
| σC1–Br3→σ*C1–H2 | 3.82 | 4.18 | 1.90 |
| σ*C1–Br3→σ*C1–O4 | 11.16 | 4.81 | – |
| σ*C1–Br3→σC1–Br3 | 8.30 | 7.72 | 1.76 |
| σ*C1–Br3→n2O4 | 13.13 | 6.93 | – |
| n1O4→n2O4 | 15.38 | 1.23 | – |
| n1O4→σ*C1–H2 | 2.01 | – | 1.32 |
| n1O4→σ*C1–Br3 | 4.02 | – | – |
| n2O4→σ*C1–H2 | 5.69 | 7.92 | 20.31 |
| n2O4→σ*C1–Br3 | 3.17 | 12.06 | 52.67 |
| n2O4→σ*C1–Br3 | 187.75 | 195.27 | – |
| n2O4→σ*C1–O4 | 5.25 | 13.14 | – |
| n2Br3→σ*C1–Br3 | 2.52 | 3.03 | – |
| n2Br3→σ*C1–O4 | – | – | 5.03 |
| n3Br3→πC1–O4 | – | – | 16.55 |
| Total | 276.50 | 274.30 | 103.06 |
Second order perturbation (E(2)) estimation of the hyperconjugative energies (kcal/mol) of BrCH2OH(IV), CH3OBr (V), and CH3BrO(VI) which were calculated using B3LYP/aug-cc-pVTZ level of theory.
| Interaction | IV | V | VI |
|---|---|---|---|
| σC1–H2→σ*O4–H5 (σ*O4–Br6)(σ*Br5–O6) | 3.09 | 6.63 | 1.42 |
| σO4–H5(σO4–Br6)→σ*C1–H2 | 2.16 | 2.25 | – |
| σC1–H2→σ*C1–Br5 | – | – | 1.63 |
| n1O4→σ*C1–H2 | 2.87 | 1.61 | – |
| σC1–H3→σ*C1–Br5 | – | – | 1.35 |
| σC1–H4→σ*C1–Br5 | – | – | 1.36 |
| (n2O4)n2Br5→σ*C1–Br6(σ*C1–H3)(σ*C1–H4) | 21.09 | 5.61 | 2.30 |
| (n2O4)n2Br5→σ*C1–H3(σ*C1–H5) | 3.57 | 5.61 | 2.19 |
| n1O4→σ*C1–H3 | 2.95 | – | – |
| (n2Br6)n3O6→σ*C1–Br5(σ*C1–O4) | – | 1.48 | 15.83 |
| n3Br6→σ*C1–O4 | 5.25 | 1.61 | – |
| σC1–Br5→σ*Br5–O6 | – | – | 1.11 |
| n2Br6→σ*C1–H2 | 1.55 | – | – |
| n2Br6→σ*C1–H3 | 1.71 | – | – |
| Total | 44.24 | 24.80 | 27.19 |
Figure 4Variation of the leading NBO donor–acceptor interaction energies with the torsion angle of rotation about (a) O–Br and (b) C–Br bonds.
Figure 5(a) Electrostatic potentials on the 0.001 au electron density surface; and (b) three dimensional graphs indicating the most positive maxima (red) and most negative minima (blue) surface points, for compounds I–VI.
Computed electrostatic potential maxima (VS,max) and minima (VS,min) on the 0.001 a.u. electron-density contours (values are in kcal/mol), Laplacian bond order and the delocalization index DI(A,B), the electron density at the BCP’s and its Laplacian and ellipticity of the C–Br and O–Br bonds.
| Species | VS,max | VS,min | LBO | DI (A|B) | ρ (r) | ∇2ρ (r) | ε |
|---|---|---|---|---|---|---|---|
| I | 107.878 (Br) | −74.725 | 0.036 | 0.335 | 0.049 | 0.148 | 0.012 |
| II | 67.630 (H) | −32.094 | 0.012 | 0.037 | 0.480 | 0.094 | 0.053 |
| 21.672 (Br) | |||||||
| III | 20.693 (Br) | −56.076 | 0.298 | 1.160 | 0.122 | −0.015 | 0.066 |
| IV | 10.936 (Br) | −54.658 | 0.229 | 1.060 | 0.114 | −0.012 | 0.024 |
| V | 17.589 (Br) | −41.306 | 0.319 | 0.928 | 0.293 | −1.162 | 0.042 |
| −41.305 | |||||||
| VI | 26.623 (Br) | −21.026 | 0.123 | 0.996 | 0.105 | −0.122 | 0.105 |
| −21.026 | −0.122 * | 0.105 * | |||||
| VII (HOBr) | 75.444 (H) | −68.255 | 0.181 | 1.249 | 0.142 | 0.187 | 0.046 |
| 52.797 (Br) |
* O–Br.