Literature DB >> 25811897

Quantitative prediction of charge mobilities of π-stacked systems by first-principles simulation.

Wei-Qiao Deng1, Lei Sun1, Jin-Dou Huang1, Shuo Chai1, Shu-Hao Wen1, Ke-Li Han1.   

Abstract

This protocol is intended to provide chemists and physicists with a tool for predicting the charge carrier mobilities of π-stacked systems such as organic semiconductors and the DNA double helix. An experimentally determined crystal structure is required as a starting point. The simulation involves the following operations: (i) searching the crystal structure; (ii) selecting molecular monomers and dimers from the crystal structure; (iii) using density function theory (DFT) calculations to determine electronic coupling for dimers; (iv) using DFT calculations to determine self-reorganization energy of monomers; and (v) using a numerical calculation to determine the charge carrier mobility. For a single crystal structure consisting of medium-sized molecules, this protocol can be completed in ∼4 h. We have selected two case studies (a rubrene crystal and a DNA segment) as examples of how this procedure can be used.

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Year:  2015        PMID: 25811897     DOI: 10.1038/nprot.2015.038

Source DB:  PubMed          Journal:  Nat Protoc        ISSN: 1750-2799            Impact factor:   13.491


  26 in total

1.  Dynamics of photoinduced charge transfer and hole transport in synthetic DNA hairpins.

Authors:  F D Lewis; R L Letsinger; M R Wasielewski
Journal:  Acc Chem Res       Date:  2001-02       Impact factor: 22.384

Review 2.  Evaluation of charge mobility in organic materials: from localized to delocalized descriptions at a first-principles level.

Authors:  Zhigang Shuai; Linjun Wang; Qikai Li
Journal:  Adv Mater       Date:  2011-03-04       Impact factor: 30.849

3.  Base pair motions control the rates and distance dependencies of reductive and oxidative DNA charge transfer.

Authors:  Linda Valis; Qiang Wang; Milen Raytchev; Ivan Buchvarov; Hans-Achim Wagenknecht; Torsten Fiebig
Journal:  Proc Natl Acad Sci U S A       Date:  2006-06-26       Impact factor: 11.205

4.  From charge transport parameters to charge mobility in organic semiconductors through multiscale simulation.

Authors:  Zhigang Shuai; Hua Geng; Wei Xu; Yi Liao; Jean-Marie André
Journal:  Chem Soc Rev       Date:  2014-01-06       Impact factor: 54.564

5.  Impact of a single base pair substitution on the charge transfer rate along short DNA hairpins.

Authors:  Nicolas Renaud; Yuri A Berlin; Mark A Ratner
Journal:  Proc Natl Acad Sci U S A       Date:  2013-08-26       Impact factor: 11.205

6.  Crossover from superexchange to hopping as the mechanism for photoinduced charge transfer in DNA hairpin conjugates.

Authors:  Frederick D Lewis; Huihe Zhu; Pierre Daublain; Torsten Fiebig; Milen Raytchev; Qiang Wang; Vladimir Shafirovich
Journal:  J Am Chem Soc       Date:  2006-01-25       Impact factor: 15.419

7.  Between superexchange and hopping: an intermediate charge-transfer mechanism in poly(A)-poly(T) DNA hairpins.

Authors:  Nicolas Renaud; Yuri A Berlin; Frederick D Lewis; Mark A Ratner
Journal:  J Am Chem Soc       Date:  2013-02-27       Impact factor: 15.419

8.  Impact of molecular packing on electronic polarization in organic crystals: the case of pentacene vs TIPS-pentacene.

Authors:  Sean M Ryno; Chad Risko; Jean-Luc Brédas
Journal:  J Am Chem Soc       Date:  2014-04-22       Impact factor: 15.419

9.  Charging effects on bonding and catalyzed oxidation of CO on Au8 clusters on MgO.

Authors:  Bokwon Yoon; Hannu Häkkinen; Uzi Landman; Anke S Wörz; Jean-Marie Antonietti; Stéphane Abbet; Ken Judai; Ueli Heiz
Journal:  Science       Date:  2005-01-21       Impact factor: 47.728

10.  Modification of n-type organic semiconductor performance of perylene diimides by substitution in different positions: two-dimensional π-stacking and hydrogen bonding.

Authors:  Ming-Xing Zhang; Guang-Jiu Zhao
Journal:  ChemSusChem       Date:  2012-02-09       Impact factor: 8.928

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  16 in total

1.  A computational study of anisotropic charge transport in air-stable fluorinated benzobisbenzothiophene (FBBBT) derivatives.

Authors:  Smruti Ranjan Sahoo; Sagar Sharma; Sridhar Sahu
Journal:  J Mol Model       Date:  2019-12-18       Impact factor: 1.810

2.  A molecular design for a turn-off NIR fluoride chemosensor.

Authors:  Xiaochen Wang; Tianxin Bai; Tianshu Chu
Journal:  J Mol Model       Date:  2021-03-08       Impact factor: 1.810

Review 3.  Photoinduced hydrogen-bonding dynamics.

Authors:  Tian-Shu Chu; Jinmei Xu
Journal:  J Mol Model       Date:  2016-08-04       Impact factor: 1.810

4.  The charge mobilities in fused ring Oligothiophenes and their derivatives: influence of molecular structures.

Authors:  Yujuan Liu; Xiaoyan Liu; Jindou Huang; Jianyong Liu; Shijie Xie; Yujun Zheng
Journal:  J Mol Model       Date:  2016-07-15       Impact factor: 1.810

5.  Influence of molecular designs on polaronic and vibrational transitions in a conjugated push-pull copolymer.

Authors:  Christoph Cobet; Jacek Gasiorowski; Reghu Menon; Kurt Hingerl; Stefanie Schlager; Matthew S White; Helmut Neugebauer; N Serdar Sariciftci; Philipp Stadler
Journal:  Sci Rep       Date:  2016-10-12       Impact factor: 4.379

6.  A DFT Study on the Electronic Structures and Conducting Properties of Rubrene and its Derivatives in Organic Field-Effect Transistors.

Authors:  Huipeng Ma; Na Liu; Jin-Dou Huang
Journal:  Sci Rep       Date:  2017-03-23       Impact factor: 4.379

7.  Photoactive layer based on T-shaped benzimidazole dyes used for solar cell: from photoelectric properties to molecular design.

Authors:  Beibei Xu; Yuanzuo Li; Peng Song; Fengcai Ma; Mengtao Sun
Journal:  Sci Rep       Date:  2017-03-28       Impact factor: 4.379

8.  Effect of the phenoxy groups on PDIB and its derivatives.

Authors:  Peng Song; Baijie Guan; Qiao Zhou; Meiyu Zhao; Jindou Huang; Fengcai Ma
Journal:  Sci Rep       Date:  2016-10-19       Impact factor: 4.379

9.  Charge-transport properties of 4-(1,2,2-tri-phenyl-vinyl)-aniline salicylaldehyde hydrazone: tight-packing induced molecular 'hardening'.

Authors:  Huipeng Ma; Shuo Chai; Dengyi Chen; Jin-Dou Huang
Journal:  IUCrJ       Date:  2017-09-01       Impact factor: 4.769

10.  Theoretical insights into excited-state hydrogen bonding effects and intramolecular proton transfer (ESIPT) mechanism for BTS system.

Authors:  Jiemin Wang; Qiang Liu; Dapeng Yang
Journal:  Sci Rep       Date:  2020-03-20       Impact factor: 4.379

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