| Literature DB >> 25809612 |
Sudip Pan1, Ranajit Saha2, Pratim K Chattaraj3.
Abstract
Ab initio and density functional tEntities:
Mesh:
Substances:
Year: 2015 PMID: 25809612 PMCID: PMC4394539 DOI: 10.3390/ijms16036402
Source DB: PubMed Journal: Int J Mol Sci ISSN: 1422-0067 Impact factor: 5.923
Figure 1Pictorial depictions of the energy minimum structures and the transition states (TSs) of H3SiNSi, HSiNSi, H3SiNgNSi and HSiNgNSi compounds. Point groups along with their electronic states are given in parentheses. TS-1 and TS-2 are associated with the dissociation of H3SiNgNSi and HSiNgNSi, producing Ng and H3SiNSi or HSiNSi.
The geometrical parameters (in Å and degrees) of the optimized geometries of H3SiNgNSi and HSiNgNSi compounds (both minimum energy structures and transition states) studied at the MP2/def2-QZVPPD level.
| Nature of Stationary Points | Compounds | rH–Si | rSi–Ng | rNg–N | rN–Si | <H–Si–Ng | <Si–Ng–N | <Ng–N–Si |
|---|---|---|---|---|---|---|---|---|
| Minimum | H3SiXeNSi | 1.471 | 2.588 | 2.338 | 1.600 | 107.0 | 180.0 | 180.0 |
| Energy | H3SiRnNSi | 1.472 | 2.688 | 2.382 | 1.598 | 107.8 | 180.0 | 180.0 |
| Structures | HSiXeNSi | 1.508 | 2.653 | 2.375 | 1.603 | 88.7 | 179.5 | 178.6 |
| HSiRnNSi | 1.510 | 2.747 | 2.420 | 1.601 | 89.0 | 179.7 | 179.9 | |
| Transition | H3SiXeNSi | 1.462(3) | 2.486 | 2.683 | 1.616 | 103.9, 99.5 | 110.6 | 126.2 |
| States | H3SiRnNSi | 1.463(5) | 2.573 | 2.733 | 1.616 | 104.1, 99.3 | 103.7 | 125.9 |
| HSiXeNSi | 1.504 | 2.511 | 2.576 | 1.626 | 87.6 | 100.7 | 125.6 | |
| HSiRnNSi | 1.505 | 2.590 | 2.623 | 1.625 | 87.7 | 96.0 | 125.5 |
Free energy change (ΔG, kcal/mol) at 298 K for different dissociation channels of H3SiNgNSi and HSiNgNSi compounds at the ωB97X-D/def2-QZVPPD level.
| Processes | ΔG | Processes | ΔG | ||
|---|---|---|---|---|---|
| Xe | Rn | Xe | Rn | ||
| H3SiNgNSi → H3SiNg+ + NSi− | 105.3 | 110.7 | HSiNgNSi → HSiNg+ + NSi− | 99.1 | 103.8 |
| H3SiNgNSi → H3Si− + NgNSi+ | 165.2 | 166.1 | HSiNgNSi → HSiNg + NSi | −3.6 | 3.8 |
| H3SiNgNSi → H3SiNSi + Ng | −119.3 | −110.5 | HSiNgNSi → HSi− + NgNSi+ | 163.6 | 163.9 |
| H3SiNgNSi → H3Si + Ng + NSi | −0.2 | 8.6 | HSiNgNSi → HSiNSi + Ng | −121.1 | −113.0 |
| H3SiNgNSi → H3Si+ + Ng + NSi− | 122.0 | 130.8 | HSiNgNSi → HSi + Ng + NSi | −5.8 | 2.4 |
| H3SiNgNSi → H3Si− + Ng + NSi+ | 201.6 | 210.4 | HSiNgNSi → HSi+ + Ng + NSi− | 112.9 | 121.1 |
| H3SiNgNSi → H2Si + NgH + NSi | 64.4 | 73.0 | HSiNgNSi → HSi− + Ng + NSi+ | 199.9 | 208.1 |
| H3SiNgNSi → H2Si+ + NgH + NSi− | 206.6 | 215.2 | HSiNgNSi → Si + NgH + NSi | 87.7 | 95.7 |
| H3SiNgNSi → H2Si− + NgH + NSi+ | 271.9 | 280.6 | HSiNgNSi → Si + NgH+ + NSi− | 220.2 | 221.9 |
| H3SiNgNSi → H2Si + NgH+ + NSi− | 196.9 | 199.2 | ΔG‡a | 9.2 | 12.8 |
| H3SiNgNSi → H2Si− + NgH+ + NSi | 236.9 | 239.2 | − | − | − |
| H3SiNgNSi → HSi + HNgH + NSi | 149.4 | 149.8 | − | − | − |
| H3SiNgNSi → HSi+ + HNgH + NSi− | 268.1 | 268.4 | − | − | − |
| H3SiNgNSi → HSi− + HNgH + NSi+ | 355.1 | 355.5 | − | − | − |
| ΔG‡a | 19.3 | 23.3 | − | − | − |
ΔG‡a is the activation free energy barrier for the processes, H3SiNgNSi → H3SiNSi + Ng and HSiNgNSi → HSiNSi + Ng.
Natural population analysis (NPA) charge on each atomic center (qk, au) and Wiberg bond indices (WBI) values of Si–Ng and Ng–N bonds computed at the MP2/def2-QZVPPD level.
| Compounds | qk | WBI | |||||
|---|---|---|---|---|---|---|---|
| H | Si | Ng | N | Si | Si–Ng | Ng–N | |
| H3SiXeNSi | −0.17 | +0.63 | +0.61 | −1.50 | +0.79 | 0.64 | 0.22 |
| H3SiRnNSi | −0.17 | +0.56 | +0.68 | −1.52 | +0.80 | 0.65 | 0.22 |
| HSiXeNSi | −0.33 | +0.56 | +0.50 | −1.50 | +0.77 | 0.63 | 0.18 |
| HSiRnNSi | −0.33 | +0.51 | +0.57 | −1.54 | +0.79 | 0.66 | 0.17 |
Calculated topological properties (au) at the bond critical points of Ng–Si and Ng–N bonds obtained from the .wfn files generated at the MP2/def2-QZVPPD level.
| Compounds | ρ(rc) | ∇2ρ(rc) | G(rc) | V(rc) | H(rc) | ELF |
|---|---|---|---|---|---|---|
| H3Si__●__XeNSi | 0.078 | −0.093 | 0.016 | −0.055 | −0.039 | 0.868 |
| H3SiXe__●__NSi | 0.073 | 0.140 | 0.057 | −0.079 | −0.022 | 0.295 |
| H3Si__●__RnNSi | 0.075 | −0.061 | 0.018 | −0.051 | −0.033 | 0.824 |
| H3SiRn__●__NSi | 0.073 | 0.139 | 0.058 | −0.081 | −0.023 | 0.284 |
| HSi__●__XeNSi | 0.069 | −0.056 | 0.017 | −0.049 | −0.032 | 0.786 |
| HSiXe__●__NSi | 0.068 | 0.137 | 0.053 | −0.072 | −0.019 | 0.278 |
| HSi__●__RnNSi | 0.066 | −0.042 | 0.017 | −0.045 | −0.028 | 0.769 |
| HSiRn__●__NSi | 0.068 | 0.132 | 0.053 | −0.073 | −0.020 | 0.276 |
Figure 2Contour plots of the Laplacian of the electron density of H3SiXeNSi and HSiXeNSi clusters at a particular plane computed at the MP2/def2-QZVPPD/WTBS level (WTBS is used for Xe and Rn; The green-colored region shows the area of ∇2ρ(r) > 0, whereas the blue-colored region shows the area of ∇2ρ(r) < 0).
Figure 3Color-filled maps of the electron localization function of H3SiXeNSi and HSiXeNSi clusters at a particular plane computed at the MP2/def2-QZVPPD/WTBS level (WTBS is used for Xe and Rn).
Energy decomposition analysis (EDA) results of the H3SiNgNSi and HSiNgNSi molecules studied at the revPBE-D3/TZ2P//MP2/def2-QZVPPD level. All of the energy terms are in kcal/mol.
| Compounds | Fragments | ΔEint | ΔEpauli | ΔEelstat | ΔEorb | ΔEdisp |
|---|---|---|---|---|---|---|
| H3SiXeNSi | [H3Si] + [XeNSi] | −46.0 | 210.4 | −82.0 (32.0%) | −172.6 (67.3%) | −1.7 (0.7%) |
| [H3SiXe]+ + [NSi]− | −128.1 | 111.6 | −159.4 (66.5%) | −78.6 (32.8%) | −1.7 (0.7%) | |
| H3SiRnNSi | [H3Si] + [RnNSi] | −49.9 | 198.8 | −80.0 (32.2%) | −166.9 (67.1%) | −1.8 (0.7%) |
| [H3SiRn]+ + [NSi]− | −132.9 | 113.0 | −166.6 (67.7%) | −77.4 (31.5%) | −1.9 (0.8%) | |
| HSiXeNSi | [HSi] + [XeNSi] | −37.8 | 169.6 | −51.0 (24.6%) | −155.4 (74.9%) | −1.0 (0.5%) |
| [HSiXe]+ + [NSi]− | −120.4 | 103.4 | −148.0 (66.2%) | −74.0 (33.1%) | −1.7 (0.8%) | |
| HSiRnNSi | [HSi] + [RnNSi] | −41.0 | 163.9 | −50.9 (24.8%) | −153.0 (74.7%) | −1.1 (0.5%) |
| [HSiRn]+ + [NSi]− | −123.7 | 105.3 | −154.4 (67.4%) | −72.7 (31.7%) | −1.9 (0.8%) |
(The percentage values within the parentheses show the contribution towards the total attractive interaction ΔEelstat + ΔEorb + ΔEdisp).