| Literature DB >> 25809612 |
Sudip Pan1, Ranajit Saha2, Pratim K Chattaraj3.
Abstract
Ab initio and density functional theory-based computations are performed to investigate the structure and stability of H3SiNgNSi and HSiNgNSi compounds (Ng = Xe, Rn). They are thermochemically unstable with respect to the dissociation channel producing Ng and H3SiNSi or HSiNSi. However, they are kinetically stable with respect to this dissociation channel having activation free energy barriers of 19.3 and 23.3 kcal/mol for H3SiXeNSi and H3SiRnNSi, respectively, and 9.2 and 12.8 kcal/mol for HSiXeNSi and HSiRnNSi, respectively. The rest of the possible dissociation channels are endergonic in nature at room temperature for Rn analogues. However, one three-body dissociation channel for H3SiXeNSi and one two-body and one three-body dissociation channels for HSiXeNSi are slightly exergonic in nature at room temperature. They become endergonic at slightly lower temperature. The nature of bonding between Ng and Si/N is analyzed by natural bond order, electron density and energy decomposition analyses. Natural population analysis indicates that they could be best represented as (H3SiNg)+(NSi)- and (HSiNg)+(NSi)-. Energy decomposition analysis further reveals that the contribution from the orbital term (ΔEorb) is dominant (ca. 67%-75%) towards the total attraction energy associated with the Si-Ng bond, whereas the electrostatic term (ΔEelstat) contributes the maximum (ca. 66%-68%) for the same in the Ng-N bond, implying the covalent nature of the former bond and the ionic nature of the latter.Entities:
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Year: 2015 PMID: 25809612 PMCID: PMC4394539 DOI: 10.3390/ijms16036402
Source DB: PubMed Journal: Int J Mol Sci ISSN: 1422-0067 Impact factor: 5.923
Figure 1Pictorial depictions of the energy minimum structures and the transition states (TSs) of H3SiNSi, HSiNSi, H3SiNgNSi and HSiNgNSi compounds. Point groups along with their electronic states are given in parentheses. TS-1 and TS-2 are associated with the dissociation of H3SiNgNSi and HSiNgNSi, producing Ng and H3SiNSi or HSiNSi.
The geometrical parameters (in Å and degrees) of the optimized geometries of H3SiNgNSi and HSiNgNSi compounds (both minimum energy structures and transition states) studied at the MP2/def2-QZVPPD level.
| Nature of Stationary Points | Compounds | rH–Si | rSi–Ng | rNg–N | rN–Si | <H–Si–Ng | <Si–Ng–N | <Ng–N–Si |
|---|---|---|---|---|---|---|---|---|
| Minimum | H3SiXeNSi | 1.471 | 2.588 | 2.338 | 1.600 | 107.0 | 180.0 | 180.0 |
| Energy | H3SiRnNSi | 1.472 | 2.688 | 2.382 | 1.598 | 107.8 | 180.0 | 180.0 |
| Structures | HSiXeNSi | 1.508 | 2.653 | 2.375 | 1.603 | 88.7 | 179.5 | 178.6 |
| HSiRnNSi | 1.510 | 2.747 | 2.420 | 1.601 | 89.0 | 179.7 | 179.9 | |
| Transition | H3SiXeNSi | 1.462(3) | 2.486 | 2.683 | 1.616 | 103.9, 99.5 | 110.6 | 126.2 |
| States | H3SiRnNSi | 1.463(5) | 2.573 | 2.733 | 1.616 | 104.1, 99.3 | 103.7 | 125.9 |
| HSiXeNSi | 1.504 | 2.511 | 2.576 | 1.626 | 87.6 | 100.7 | 125.6 | |
| HSiRnNSi | 1.505 | 2.590 | 2.623 | 1.625 | 87.7 | 96.0 | 125.5 |
Free energy change (ΔG, kcal/mol) at 298 K for different dissociation channels of H3SiNgNSi and HSiNgNSi compounds at the ωB97X-D/def2-QZVPPD level.
| Processes | ΔG | Processes | ΔG | ||
|---|---|---|---|---|---|
| Xe | Rn | Xe | Rn | ||
| H3SiNgNSi → H3SiNg+ + NSi− | 105.3 | 110.7 | HSiNgNSi → HSiNg+ + NSi− | 99.1 | 103.8 |
| H3SiNgNSi → H3Si− + NgNSi+ | 165.2 | 166.1 | HSiNgNSi → HSiNg + NSi | −3.6 | 3.8 |
| H3SiNgNSi → H3SiNSi + Ng | −119.3 | −110.5 | HSiNgNSi → HSi− + NgNSi+ | 163.6 | 163.9 |
| H3SiNgNSi → H3Si + Ng + NSi | −0.2 | 8.6 | HSiNgNSi → HSiNSi + Ng | −121.1 | −113.0 |
| H3SiNgNSi → H3Si+ + Ng + NSi− | 122.0 | 130.8 | HSiNgNSi → HSi + Ng + NSi | −5.8 | 2.4 |
| H3SiNgNSi → H3Si− + Ng + NSi+ | 201.6 | 210.4 | HSiNgNSi → HSi+ + Ng + NSi− | 112.9 | 121.1 |
| H3SiNgNSi → H2Si + NgH + NSi | 64.4 | 73.0 | HSiNgNSi → HSi− + Ng + NSi+ | 199.9 | 208.1 |
| H3SiNgNSi → H2Si+ + NgH + NSi− | 206.6 | 215.2 | HSiNgNSi → Si + NgH + NSi | 87.7 | 95.7 |
| H3SiNgNSi → H2Si− + NgH + NSi+ | 271.9 | 280.6 | HSiNgNSi → Si + NgH+ + NSi− | 220.2 | 221.9 |
| H3SiNgNSi → H2Si + NgH+ + NSi− | 196.9 | 199.2 | ΔG‡a | 9.2 | 12.8 |
| H3SiNgNSi → H2Si− + NgH+ + NSi | 236.9 | 239.2 | − | − | − |
| H3SiNgNSi → HSi + HNgH + NSi | 149.4 | 149.8 | − | − | − |
| H3SiNgNSi → HSi+ + HNgH + NSi− | 268.1 | 268.4 | − | − | − |
| H3SiNgNSi → HSi− + HNgH + NSi+ | 355.1 | 355.5 | − | − | − |
| ΔG‡a | 19.3 | 23.3 | − | − | − |
ΔG‡a is the activation free energy barrier for the processes, H3SiNgNSi → H3SiNSi + Ng and HSiNgNSi → HSiNSi + Ng.
Natural population analysis (NPA) charge on each atomic center (qk, au) and Wiberg bond indices (WBI) values of Si–Ng and Ng–N bonds computed at the MP2/def2-QZVPPD level.
| Compounds | qk | WBI | |||||
|---|---|---|---|---|---|---|---|
| H | Si | Ng | N | Si | Si–Ng | Ng–N | |
| H3SiXeNSi | −0.17 | +0.63 | +0.61 | −1.50 | +0.79 | 0.64 | 0.22 |
| H3SiRnNSi | −0.17 | +0.56 | +0.68 | −1.52 | +0.80 | 0.65 | 0.22 |
| HSiXeNSi | −0.33 | +0.56 | +0.50 | −1.50 | +0.77 | 0.63 | 0.18 |
| HSiRnNSi | −0.33 | +0.51 | +0.57 | −1.54 | +0.79 | 0.66 | 0.17 |
Calculated topological properties (au) at the bond critical points of Ng–Si and Ng–N bonds obtained from the .wfn files generated at the MP2/def2-QZVPPD level.
| Compounds | ρ(rc) | ∇2ρ(rc) | G(rc) | V(rc) | H(rc) | ELF |
|---|---|---|---|---|---|---|
| H3Si__●__XeNSi | 0.078 | −0.093 | 0.016 | −0.055 | −0.039 | 0.868 |
| H3SiXe__●__NSi | 0.073 | 0.140 | 0.057 | −0.079 | −0.022 | 0.295 |
| H3Si__●__RnNSi | 0.075 | −0.061 | 0.018 | −0.051 | −0.033 | 0.824 |
| H3SiRn__●__NSi | 0.073 | 0.139 | 0.058 | −0.081 | −0.023 | 0.284 |
| HSi__●__XeNSi | 0.069 | −0.056 | 0.017 | −0.049 | −0.032 | 0.786 |
| HSiXe__●__NSi | 0.068 | 0.137 | 0.053 | −0.072 | −0.019 | 0.278 |
| HSi__●__RnNSi | 0.066 | −0.042 | 0.017 | −0.045 | −0.028 | 0.769 |
| HSiRn__●__NSi | 0.068 | 0.132 | 0.053 | −0.073 | −0.020 | 0.276 |
Figure 2Contour plots of the Laplacian of the electron density of H3SiXeNSi and HSiXeNSi clusters at a particular plane computed at the MP2/def2-QZVPPD/WTBS level (WTBS is used for Xe and Rn; The green-colored region shows the area of ∇2ρ(r) > 0, whereas the blue-colored region shows the area of ∇2ρ(r) < 0).
Figure 3Color-filled maps of the electron localization function of H3SiXeNSi and HSiXeNSi clusters at a particular plane computed at the MP2/def2-QZVPPD/WTBS level (WTBS is used for Xe and Rn).
Energy decomposition analysis (EDA) results of the H3SiNgNSi and HSiNgNSi molecules studied at the revPBE-D3/TZ2P//MP2/def2-QZVPPD level. All of the energy terms are in kcal/mol.
| Compounds | Fragments | ΔEint | ΔEpauli | ΔEelstat | ΔEorb | ΔEdisp |
|---|---|---|---|---|---|---|
| H3SiXeNSi | [H3Si] + [XeNSi] | −46.0 | 210.4 | −82.0 (32.0%) | −172.6 (67.3%) | −1.7 (0.7%) |
| [H3SiXe]+ + [NSi]− | −128.1 | 111.6 | −159.4 (66.5%) | −78.6 (32.8%) | −1.7 (0.7%) | |
| H3SiRnNSi | [H3Si] + [RnNSi] | −49.9 | 198.8 | −80.0 (32.2%) | −166.9 (67.1%) | −1.8 (0.7%) |
| [H3SiRn]+ + [NSi]− | −132.9 | 113.0 | −166.6 (67.7%) | −77.4 (31.5%) | −1.9 (0.8%) | |
| HSiXeNSi | [HSi] + [XeNSi] | −37.8 | 169.6 | −51.0 (24.6%) | −155.4 (74.9%) | −1.0 (0.5%) |
| [HSiXe]+ + [NSi]− | −120.4 | 103.4 | −148.0 (66.2%) | −74.0 (33.1%) | −1.7 (0.8%) | |
| HSiRnNSi | [HSi] + [RnNSi] | −41.0 | 163.9 | −50.9 (24.8%) | −153.0 (74.7%) | −1.1 (0.5%) |
| [HSiRn]+ + [NSi]− | −123.7 | 105.3 | −154.4 (67.4%) | −72.7 (31.7%) | −1.9 (0.8%) |
(The percentage values within the parentheses show the contribution towards the total attractive interaction ΔEelstat + ΔEorb + ΔEdisp).