| Literature DB >> 25802804 |
Máire-Caitlín Casey1, Michael J Kerin1, James A Brown1, Karl J Sweeney1.
Abstract
Background. Every new scientific field can be traced back to a single, seminal publication. Therefore, a bibliometric analysis can yield significant insights into the history and potential future of a research field. This year marks 21 years since that first ground-breaking microRNA (miRNA) publication. Here, we make the case that the miRNA field is mature, utilising bibliometrics. Methods. Utilising the Web of Science™ (WoS) database publication and citation information, we charted the history of miRNA-related publications, describing and dissecting contributions by publication type (plus category, pay-per-view or open access), journal (highlighting dominant journals), by country, citations and languages. Results. We found that the United States of America (USA) publishes the most miRNA papers, followed by China and Germany. Significantly, publications attributed to the USA also receive the most citations per publication, followed by a close grouping of England, Germany and France. We also describe the relevance and acceptance of the miRNA field to different research areas, through its uptake in areas from oncology to plant sciences. Exploring the recent momentous change in publishing, we find that although pay-per view articles vastly out-number open-access articles, the citation rate of pay-per-view articles is currently less than double that of open-access. Conclusions. We believe the trends described here represent the typical evolution of a research field. By analysing publications, citations and distribution patterns, key moments in the evolution of this research area are recognised, indicating the maturation of the miRNA field and providing guidance for future research endeavours.Entities:
Keywords: Bibliometric; Let-7; Lin-4; miRNA; microRNA
Year: 2015 PMID: 25802804 PMCID: PMC4369334 DOI: 10.7717/peerj.829
Source DB: PubMed Journal: PeerJ ISSN: 2167-8359 Impact factor: 2.984
Figure 1Number of miRNA publications per year.
Figure 2Language of publication.
Rank of 25 countries publishing miRNA material most prolifically with cumulative number of publications per country.
| Rank | Country | No. publications |
|---|---|---|
| 1 | United States | 11,056 |
| 2 | People’s Republic of China | 5,584 |
| 3 | Germany | 2,083 |
| 4 | United Kingdom | 1,527 |
| 5 | Japan | 1,474 |
| 6 | Italy | 1,455 |
| 7 | Canada | 904 |
| 8 | France | 848 |
| 9 | Australia | 650 |
| 10 | South Korea | 645 |
| 11 | Netherlands | 625 |
| 12 | Spain | 621 |
| 13 | Switzerland | 492 |
| 14 | Denmark | 420 |
| 15 | Taiwan | 411 |
| 16 | India | 371 |
| 17 | Israel | 348 |
| 18 | Sweden | 335 |
| 19 | Belgium | 292 |
| 20 | Ireland | 254 |
| 21 | Singapore | 239 |
| 22 | Austria | 203 |
| 23 | Brazil | 201 |
| 24 | Poland | 184 |
| 25 | Greece | 158 |
Figure 3Number of publications per country.
Rank of 25 research categories featuring miRNA publications most frequently, with number of publications per research category, and percentage of overall publication.
| Rank | Category | No. works | % Total works |
|---|---|---|---|
| 1 | Biochemistry Molecular Biology | 6,163 | 23.53 |
| 2 | Oncology | 4,070 | 15.54 |
| 3 | Cell Biology | 3,923 | 14.98 |
| 4 | Genetics Heredity | 2,554 | 9.75 |
| 5 | Science Technology Other Topics | 2,474 | 9.45 |
| 6 | Biotechnology Applied Microbiology | 1,634 | 6.24 |
| 7 | Research Experimental Medicine | 1,623 | 6.19 |
| 8 | Haematology | 1,131 | 4.32 |
| 9 | Cardiovascular System Cardiology | 1,068 | 4.077 |
| 10 | Neurosciences Neurology | 1,057 | 4.04 |
| 11 | Pharmacology Pharmacy | 935 | 3.57 |
| 12 | Gastroenterology Hepatology | 906 | 3.46 |
| 13 | Pathology | 895 | 3.42 |
| 14 | Biophysics | 893 | 3.40 |
| 15 | Plant Sciences | 745 | 2.84 |
| 16 | Immunology | 701 | 2.68 |
| 17 | Developmental Biology | 696 | 2.66 |
| 18 | Chemistry | 575 | 2.19 |
| 19 | Endocrinology Metabolism | 573 | 2.19 |
| 20 | Life Sciences Biomedicine Other Topics | 516 | 1.97 |
| 21 | Virology | 482 | 1.84 |
| 22 | Mathematical Computational Biology | 411 | 1.57 |
| 23 | General Internal Medicine | 344 | 1.31 |
| 24 | Surgery | 333 | 1.27 |
| 25 | Physiology | 308 | 1.18 |
Rank of 25 journals publishing miRNA material most frequently, with cumulative number of publications per journal.
| Rank | Journal | No. publications |
|---|---|---|
| 1 | PLoS ONE | 1,589 |
| 2 | Nucleic Acids Research | 489 |
| 3 | PNAS | 451 |
| 4 | BLOOD | 432 |
| 5 | Journal of Biological Chemistry | 346 |
| 6 | Biochem Biophys Res Communications | 329 |
| 7 | RNA-a Publication of the RNA Society | 303 |
| 8 | Cancer Research | 302 |
| 9 | BMC Genomics | 296 |
| 10 | Hepatology | 252 |
| 11 | Circulation | 246 |
| 12 | Oncogene | 211 |
| 13 | Faseb Journal | 210 |
| 14 | Cell Cycle | 200 |
| 15 | Febs Letter | 180 |
| 16 | Modern Pathology | 179 |
| 17 | Gastroenterology | 176 |
| 18 | Laboratory Investigation | 171 |
| 19 | Genes Development | 167 |
| 20 | Journal of Virology | 162 |
| 21 | Cell | 159 |
| 22 | RNA Biology | 146 |
| 23 | International Journal of Cancer | 136 |
| 24 | Nature | 136 |
| 25 | Oncology Reports | 136 |
Figure 4Publication citations.
(A) Number of citations per yearly publication. (B) Number of cumulative citations per country. (C) Average citation per publication per country.
Figure 5Number of citations per journal for the 10 journals publishing miRNA material most prolifically.
Top 10 cited primary research miRNA publications.
| Rank | Citations | Title | Author | Journal | Year |
|---|---|---|---|---|---|
| 1 | 4,167 | Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets | Lewis BP, et al. | Cell | 2005 |
| 2 | 3,671 | The C-Elegans heterochronic gene Lin-4 encodes small RNAs with antisense complementarity to Lin-14 | Lee RC, et al. | Cell | 1993 |
| 3 | 3,512 | MicroRNA expression profiles classify human cancers | Lu J, et al. | Nature | 2005 |
| 4 | 2,337 | Mapping and quantifying mammalian transcriptomes by RNA-Seq | Mortazavi A, et al. | Nature Methods | 2008 |
| 5 | 2,291 | A microRNA expression signature of human solid tumors defines cancer gene targets | Volinia S, et al. | PNAS | 2006 |
| 6 | 2,168 | Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs | Lim LP, et al. | Nature | 2005 |
| 7 | 2,151 | Prediction of mammalian microRNA targets | Lewis BP et al. | Cell | 2003 |
| 8 | 2,009 | Identification of novel genes coding for small expressed RNAs | Lagos-Quintana M et al. | Science | 2001 |
| 9 | 1,954 | Combinatorial microRNA target predictions | Krek A et al. | Nature Genetics | 2005 |
| 10 | 1,851 | The nuclear RNase III drosha initiates microRNA processing | Lee Y et al. | Nature | 2003 |
Figure 6Open access versus pay-per-view publications.
(A) Number of open access versus pay-per-view publications. (B) Number of cumulative citations by open versus non-open access publications. (C) Average number of citations per open and pay-per-view publication.