Literature DB >> 25802025

Gut microbiota: Optimal sampling of the intestinal microbiota for research.

R Balfour Sartor1.   

Abstract

Mesh：

Year:  2015        PMID： 25802025     DOI： 10.1038/nrgastro.2015.46

Source DB:  PubMed          Journal:  Nat Rev Gastroenterol Hepatol        ISSN： 1759-5045            Impact factor:   46.802


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  10 in total

1.  Spatial organization and composition of the mucosal flora in patients with inflammatory bowel disease.

Authors:  Alexander Swidsinski; Jutta Weber; Vera Loening-Baucke; Laura P Hale; Herbert Lochs
Journal:  J Clin Microbiol       Date:  2005-07       Impact factor: 5.948

2.  Therapeutic Manipulation of the Microbiome in IBD: Current Results and Future Approaches.

Authors:  Jonathan J Hansen; R Balfour Sartor
Journal:  Curr Treat Options Gastroenterol       Date:  2015-03

3.  Culture independent analysis of ileal mucosa reveals a selective increase in invasive Escherichia coli of novel phylogeny relative to depletion of Clostridiales in Crohn's disease involving the ileum.

Authors:  Martin Baumgart; Belgin Dogan; Mark Rishniw; Gil Weitzman; Brian Bosworth; Rhonda Yantiss; Renato H Orsi; Martin Wiedmann; Patrick McDonough; Sung Guk Kim; Douglas Berg; Ynte Schukken; Ellen Scherl; Kenneth W Simpson
Journal:  ISME J       Date:  2007-07-12       Impact factor: 10.302

4.  The treatment-naive microbiome in new-onset Crohn's disease.

Authors:  Subra Kugathasan; Lee A Denson; Dirk Gevers; Yoshiki Vázquez-Baeza; Will Van Treuren; Boyu Ren; Emma Schwager; Dan Knights; Se Jin Song; Moran Yassour; Xochitl C Morgan; Aleksandar D Kostic; Chengwei Luo; Antonio González; Daniel McDonald; Yael Haberman; Thomas Walters; Susan Baker; Joel Rosh; Michael Stephens; Melvin Heyman; James Markowitz; Robert Baldassano; Anne Griffiths; Francisco Sylvester; David Mack; Sandra Kim; Wallace Crandall; Jeffrey Hyams; Curtis Huttenhower; Rob Knight; Ramnik J Xavier
Journal:  Cell Host Microbe       Date:  2014-03-12       Impact factor: 21.023

5.  Spatial heterogeneity and co-occurrence patterns of human mucosal-associated intestinal microbiota.

Authors:  Zhigang Zhang; Jiawei Geng; Xiaodan Tang; Hong Fan; Jinchao Xu; Xiujun Wen; Zhanshan Sam Ma; Peng Shi
Journal:  ISME J       Date:  2013-10-17       Impact factor: 10.302

6.  The intestinal microbiota in inflammatory bowel diseases.

Authors:  R Balfour Sartor
Journal:  Nestle Nutr Inst Workshop Ser       Date:  2014-09-05

7.  Bacterial community mapping of the mouse gastrointestinal tract.

Authors:  Shenghua Gu; Dandan Chen; Jin-Na Zhang; Xiaoman Lv; Kun Wang; Li-Ping Duan; Yong Nie; Xiao-Lei Wu
Journal:  PLoS One       Date:  2013-10-07       Impact factor: 3.240

8.  Mouse background strain profoundly influences Paneth cell function and intestinal microbial composition.

Authors:  Ajay S Gulati; Michael T Shanahan; Janelle C Arthur; Emily Grossniklaus; Richard J von Furstenberg; Lieselotte Kreuk; Susan J Henning; Christian Jobin; R Balfour Sartor
Journal:  PLoS One       Date:  2012-02-27       Impact factor: 3.240

9.  Bacterial biogeography of the human digestive tract.

Authors:  Jennifer C Stearns; Michael D J Lynch; Dilani B Senadheera; Howard C Tenenbaum; Michael B Goldberg; Dennis G Cvitkovitch; Kenneth Croitoru; Gabriel Moreno-Hagelsieb; Josh D Neufeld
Journal:  Sci Rep       Date:  2011-11-25       Impact factor: 4.379

10.  Spatial variation of the colonic microbiota in patients with ulcerative colitis and control volunteers.

Authors:  A Lavelle; G Lennon; O O'Sullivan; N Docherty; A Balfe; A Maguire; H E Mulcahy; G Doherty; D O'Donoghue; J Hyland; R P Ross; J C Coffey; K Sheahan; P D Cotter; F Shanahan; D C Winter; P R O'Connell
Journal:  Gut       Date:  2015-01-16       Impact factor: 23.059
  10 in total
  17 in total

1.  Relationship Between Microbiota of the Colonic Mucosa vs Feces and Symptoms, Colonic Transit, and Methane Production in Female Patients With Chronic Constipation.

Authors:  Gopanandan Parthasarathy; Jun Chen; Xianfeng Chen; Nicholas Chia; Helen M O'Connor; Patricia G Wolf; H Rex Gaskins; Adil E Bharucha
Journal:  Gastroenterology       Date:  2015-10-13       Impact factor: 22.682

Review 2.  The Gut Microbiome in Adult and Pediatric Functional Gastrointestinal Disorders.

Authors:  Andrea Shin; Geoffrey A Preidis; Robert Shulman; Purna C Kashyap
Journal:  Clin Gastroenterol Hepatol       Date:  2018-08-25       Impact factor: 11.382

Review 3.  Finding intestinal fortitude: Integrating the microbiome into a holistic view of depression mechanisms, treatment, and resilience.

Authors:  M C Flux; Christopher A Lowry
Journal:  Neurobiol Dis       Date:  2019-08-24       Impact factor: 5.996

4.  Antibiotic exposure postweaning disrupts the neurochemistry and function of enteric neurons mediating colonic motor activity.

Authors:  Lin Y Hung; Pavitha Parathan; Prapaporn Boonma; Qinglong Wu; Yi Wang; Anthony Haag; Ruth Ann Luna; Joel C Bornstein; Tor C Savidge; Jaime P P Foong
Journal:  Am J Physiol Gastrointest Liver Physiol       Date:  2020-05-11       Impact factor: 4.052

5.  The microbiota-derived metabolite indole decreases mucosal inflammation and injury in a murine model of NSAID enteropathy.

Authors:  Canaan M Whitfield-Cargile; Noah D Cohen; Robert S Chapkin; Brad R Weeks; Laurie A Davidson; Jennifer S Goldsby; Carrie L Hunt; Shelby H Steinmeyer; Rani Menon; Jan S Suchodolski; Arul Jayaraman; Robert C Alaniz
Journal:  Gut Microbes       Date:  2016-03-23

6.  Reproducibility of assessing fecal microbiota in chronic constipation.

Authors:  G Parthasarathy; J Chen; N Chia; H M O'Connor; H R Gaskins; A E Bharucha
Journal:  Neurogastroenterol Motil       Date:  2017-07-28       Impact factor: 3.598

7.  Does the intestinal microbial community of Korean Crohn's disease patients differ from that of western patients?

Authors:  Chang Soo Eun; Min-Jung Kwak; Dong Soo Han; A Reum Lee; Dong Il Park; Suk-Kyun Yang; Yong Seok Kim; Jihyun F Kim
Journal:  BMC Gastroenterol       Date:  2016-02-29       Impact factor: 3.067

8.  Linking Spatial Structure and Community-Level Biotic Interactions through Cooccurrence and Time Series Modeling of the Human Intestinal Microbiota.

Authors:  Eric J de Muinck; Knut E A Lundin; Pål Trosvik
Journal:  mSystems       Date:  2017-09-05       Impact factor: 6.496

Review 9.  Sampling Strategies for Three-Dimensional Spatial Community Structures in IBD Microbiota Research.

Authors:  Shaocun Zhang; Xiaocang Cao; He Huang
Journal:  Front Cell Infect Microbiol       Date:  2017-02-24       Impact factor: 5.293

10.  Age-Related Colonic Mucosal Microbiome Community Shifts in Monkeys.

Authors:  Ravichandra Vemuri; Chrissy Sherrill; Matthew A Davis; Kylie Kavanagh
Journal:  J Gerontol A Biol Sci Med Sci       Date:  2021-10-13       Impact factor: 6.053
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