Literature DB >> 25801053

NAD in RNA: unconventional headgear.

Daniel J Luciano1, Joel G Belasco2.   

Abstract

Although widely assumed to bear a 5'-terminal triphosphate or monophosphate, recent evidence suggests that the 5' end of bacterial RNA can sometimes bear a modification reminiscent of a eukaryotic cap. A new study has now identified Escherichia coli RNAs that begin with a noncanonical cap resembling the redox cofactor nicotinamide adenine dinucleotide (NAD), as well as a cellular enzyme that can remove it. The biological function of such caps remains to be determined.
Copyright © 2015 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  NudC; RNA I; RNA degradation; RNase E; RppH; sRNA

Mesh:

Substances:

Year:  2015        PMID: 25801053      PMCID: PMC4408252          DOI: 10.1016/j.tibs.2015.03.004

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN: 0968-0004            Impact factor:   13.807


  10 in total

1.  Polyadenylic acid sequences in E. coli messenger RNA.

Authors:  H Nakazato; S Venkatesan; M Edmonds
Journal:  Nature       Date:  1975-07-10       Impact factor: 49.962

2.  Structure of Escherichia coli RNase E catalytic domain and implications for RNA turnover.

Authors:  Anastasia J Callaghan; Maria Jose Marcaida; Jonathan A Stead; Kenneth J McDowall; William G Scott; Ben F Luisi
Journal:  Nature       Date:  2005-10-20       Impact factor: 49.962

3.  Initiation of RNA decay in Escherichia coli by 5' pyrophosphate removal.

Authors:  Helena Celesnik; Atilio Deana; Joel G Belasco
Journal:  Mol Cell       Date:  2007-07-06       Impact factor: 17.970

4.  NAD captureSeq indicates NAD as a bacterial cap for a subset of regulatory RNAs.

Authors:  Hana Cahová; Marie-Luise Winz; Katharina Höfer; Gabriele Nübel; Andres Jäschke
Journal:  Nature       Date:  2014-12-22       Impact factor: 49.962

5.  The bacterial enzyme RppH triggers messenger RNA degradation by 5' pyrophosphate removal.

Authors:  Atilio Deana; Helena Celesnik; Joel G Belasco
Journal:  Nature       Date:  2008-01-17       Impact factor: 49.962

6.  Ribonuclease E is a 5'-end-dependent endonuclease.

Authors:  G A Mackie
Journal:  Nature       Date:  1998-10-15       Impact factor: 49.962

7.  Control of RNase E-mediated RNA degradation by 5'-terminal base pairing in E. coli.

Authors:  P Bouvet; J G Belasco
Journal:  Nature       Date:  1992-12-03       Impact factor: 49.962

8.  Cloning, purification, and properties of a novel NADH pyrophosphatase. Evidence for a nucleotide pyrophosphatase catalytic domain in MutT-like enzymes.

Authors:  D N Frick; M J Bessman
Journal:  J Biol Chem       Date:  1995-01-27       Impact factor: 5.157

9.  Substrate ambiguity among the nudix hydrolases: biologically significant, evolutionary remnant, or both?

Authors:  Alexander G McLennan
Journal:  Cell Mol Life Sci       Date:  2012-11-27       Impact factor: 9.261

10.  LC/MS analysis of cellular RNA reveals NAD-linked RNA.

Authors:  Y Grace Chen; Walter E Kowtoniuk; Isha Agarwal; Yinghua Shen; David R Liu
Journal:  Nat Chem Biol       Date:  2009-10-11       Impact factor: 15.040

  10 in total
  7 in total

1.  Characterization of 3'-Phosphate RNA Ligase Paralogs RtcB1, RtcB2, and RtcB3 from Myxococcus xanthus Highlights DNA and RNA 5'-Phosphate Capping Activity of RtcB3.

Authors:  William P Maughan; Stewart Shuman
Journal:  J Bacteriol       Date:  2015-09-08       Impact factor: 3.490

2.  Fluorescent probe displacement assays reveal unique nucleic acid binding properties of human nudix enzymes.

Authors:  Atreyei Ray; David N Frick
Journal:  Anal Biochem       Date:  2020-02-12       Impact factor: 3.365

Review 3.  Applications of Phosphate Modification and Labeling to Study (m)RNA Caps.

Authors:  Marcin Warminski; Pawel J Sikorski; Joanna Kowalska; Jacek Jemielity
Journal:  Top Curr Chem (Cham)       Date:  2017-01-23

4.  Structure and function of the bacterial decapping enzyme NudC.

Authors:  Katharina Höfer; Sisi Li; Florian Abele; Jens Frindert; Jasmin Schlotthauer; Julia Grawenhoff; Jiamu Du; Dinshaw J Patel; Andres Jäschke
Journal:  Nat Chem Biol       Date:  2016-07-18       Impact factor: 15.040

5.  The mechanism of RNA 5′ capping with NAD+, NADH and desphospho-CoA.

Authors:  Jeremy G Bird; Yu Zhang; Yuan Tian; Natalya Panova; Ivan Barvík; Landon Greene; Min Liu; Brian Buckley; Libor Krásný; Jeehiun K Lee; Craig D Kaplan; Richard H Ebright; Bryce E Nickels
Journal:  Nature       Date:  2016-07-06       Impact factor: 49.962

6.  A Novel NAD-RNA Decapping Pathway Discovered by Synthetic Light-Up NAD-RNAs.

Authors:  Florian Abele; Katharina Höfer; Patrick Bernhard; Julia Grawenhoff; Maximilian Seidel; André Krause; Sara Kopf; Martin Schröter; Andres Jäschke
Journal:  Biomolecules       Date:  2020-03-28

7.  DapF stabilizes the substrate-favoring conformation of RppH to stimulate its RNA-pyrophosphohydrolase activity in Escherichia coli.

Authors:  Qiang Wang; Delin Zhang; Zeyuan Guan; Dongqin Li; Kai Pei; Jian Liu; Tingting Zou; Ping Yin
Journal:  Nucleic Acids Res       Date:  2018-07-27       Impact factor: 16.971

  7 in total

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