| Literature DB >> 25799405 |
Vanesa Martínez-Barquero1, Griselda de Marco2, Sergio Martínez-Hervas3, Pilar Rentero2, Inmaculada Galan-Chilet2, Sebastian Blesa2, David Morchon4, Sonsoles Morcillo5, Gemma Rojo5, Juan Francisco Ascaso3, José Tomás Real3, Juan Carlos Martín-Escudero4, Felipe Javier Chaves6.
Abstract
BACKGROUND/Entities:
Mesh:
Substances:
Year: 2015 PMID: 25799405 PMCID: PMC4370725 DOI: 10.1371/journal.pone.0118471
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
General characteristics of the population.
| Characteristic | Valcar | Hortega | Valcar + Hortega |
|---|---|---|---|
| No. Of subjects | 468 | 1502 | 1970 |
| Age (years) | 46.4 ± 14.9 | 54.4 ± 19.3 | 52.6 ± 18.7 |
| BMI (kg/m2) | 28 ± 4.7 | 26.4 ± 4.1 | 27.7 ± 4.4 |
| Waist circumference (cm) | 92.6 ± 12.8 | 89.5 ± 13.0 | 90.2 ± 13.0 |
| Obesity (n, %) | 114 (24.8) | 356 (23.7) | 470 (23.9) |
| Abdominal obesity (n, %) | 151 (32.8) | 414 (27.6) | 565 (28.8) |
| Diabetes mellitus (n, %) | 55 (11.9) | 114 (7.6) | 169 (8.6) |
| Glucose (mg/dL) | 99.7 ± 24.4 | 92.5 ± 20.4 | 91.9 ± 29.9 |
| Hypertension (n, %) | 129 (26.7) | 642 (42.7) | 771 (39.3) |
| Systolic blood pressure (mmHg) | 126.5 ± 16.1 | 130.7 ± 21.6 | 129.5 ± 20.5 |
| Diastolic blood pressure (mmHg) | 77.1 ± 9.9 | 79.1 ± 10.6 | 78.2 ± 10.4 |
| Total cholesterol (mg/dL) | 222.7 ± 61.7 | 201.3 ± 38.1 | 207.6 ± 46.2 |
| HDL cholesterol (mg/ dL) | 56.4 ± 15.1 | 51.7 ± 14.2 | 53.9 ± 14.5 |
| Triglycerides (mg/ dL) | 123.4 ± 163.3 | 153.1 ± 113.8 | 145.5 ± 127.4 |
| Metabolic syndrome (n, %) | |||
| IDF criteria | 171 (36.5) | 588 (39.1) | 759 (38.5) |
| ATP III criteria | 148 (31.6) | 480 (31.9) | 628 (31.9) |
Values are mean ± standard deviation. For qualitative variables, data are expressed as (n, %)
* p-value < 0.0001
Characteristics of selected Polymorphisms.
| Chr | HGN | Gene name | Ensemble ID | SNP name | Chr position | Reference | % Genotype | HW | MAF | Allele Reference vs minor |
|---|---|---|---|---|---|---|---|---|---|---|
| 6 | EDN1 | Endothelin 1 | ENSG00000078401 | rs1800541 | 12397205 | NM_001955.4:c.-1644T>G | 97.7 | 0.032 | 0.228 | T>G |
| rs3087459 | 12397625 | NM_001955.4:c.-1224A>C | 98.3 | 0.021 | 0.187 | A>C | ||||
| rs2070699 | 12400758 | NM_001955.4:c.233+30G>T | 97.7 | 0.957 | 0.401 | G>T | ||||
| rs5370 | 12404241 | NM_001955.4:c.594G>T | 98.5 | 0.170 | 0.206 | G>T | ||||
| 1 | EDN2 | Endothelin 2 | ENSG00000127129 | rs11210262 | 41716731 | NM_001956.3:c.*936G>C | 97.0 | 0.476 | 0.072 | G>C |
| rs11572340 | 41723492 | NM_001956.3:c.-633G>T | 98.1 | 0.199 | 0.130 | G>T | ||||
| 20 | EDN3 | Endothelin 3 | ENSG00000124205 | rs260741 | 57309550 | NM_000114.2:c.52+236G>A | 99.0 | 0.710 | 0.200 | C>T |
| rs11570257 | 57310195 | NM_000114.2:c.365+23G>A | 99.6 | 1.00 | 0.016 | G>A | ||||
| 4 | EDNRA | Endothelin receptor type A | ENSG00000151617 | rs6842241 | 148620269 | NM_001957.3:c.-1780C>A | 97.3 | 0.123 | 0.247 | C>A |
| rs1801708 | 148621819 | NM_001957.3:c.-230G>A | 96.6 | 0.387 | 0.464 | G>A | ||||
| rs5333 | 148680487 | NM_001957.3:c.969T>C | 99.5 | 0.256 | 0.326 | T>C | ||||
| rs5334 | 148680523 | NM_001957.3:c.1005G>A | 98.3 | 0.440 | 0.326 | G>A | ||||
| rs5335 | 148683290 | NM_001957.3:c.*70G>C | 98.9 | 0.927 | 0.499 | G>C | ||||
| rs5342 | 148684221 | NM_001957.3:c.*1001A>G | 97.9 | 0.310 | 0.353 | A>G | ||||
| 13 | EDNRB | Endothelin receptor type B | ENSG00000136160 | rs5352 | 77373231 | NM_001201397.1:c.1184G>A | 99.7 | 0.085 | 0.007 | G>A |
| rs5351 | 77373314 | NM_001201397.1:c.1101A>G | 99.4 | 0.788 | 0.451 | G>A | ||||
| rs12716722 | 77390857 | NM_001201397.1:c.220–97A>G | 99.9 | 0.935 | 0.062 | A>G | ||||
| rs3759475 | 77393106 | NM_001201397.1:c.-1355T>C | 99.7 | 0.604 | 0.500 | C>T |
HGN, The HUGO Gene Nomenclature.
¥:Tag-SNP by Hapmap in Caucasian patients. Ensemble ID: Ensemble human release 53. SNP name: dbSNP129 (NCBI´s build 36, version 3)
Association between obesity and BMI and SNPs of EDNRB genes adjusted by age and sex in: A-Valcar Study / B-Hortega Study / C-Both.
| EDNRB | dbSNP | Genotype | N | BMI | % non obese | % obese | Obesity OR (95% CI) |
|---|---|---|---|---|---|---|---|
|
| |||||||
|
| |||||||
| rs5351 | |||||||
| HWE: 0.7881 | GG | 154 | 27.43 (0.36) | 105 (34.4%) | 49 (46.2%) | 1.00 | |
| MAF: 0.451 | AG-AA | 257 | 27.45 (0.3) | 200 (65.6%) | 57 (53.8%) | 0.63 (0.40–0.99) | |
|
| 0.65 |
| |||||
| rs3759475 | |||||||
| HWE: 0.6045 | CC | 149 | 27.35 (0.37) | 103 (33.8%) | 46 (43.4%) | 1.00 | |
| MAF: 0.500 | CT-TT | 262 | 27.49 (0.3) | 202 (66.2%) | 60 (56.6%) | 0.70 (0.44–1.10) | |
|
| 0.41 | 0.12 | |||||
|
| |||||||
| rs5351 | |||||||
| HWE: 0.7881 | GG | 480 | 26.64 (0.21) | 372 (31.9%) | 108 (42.2%) | 1.00 | |
| MAF: 0.451 | AG-AA | 942 | 26.27 (0.13) | 794 (68.1%) | 148 (57.8%) | 0.62 (0.47–0.83) | |
|
| 0.08 |
| |||||
| rs3759475 | |||||||
| HWE: 0.6045 | CC | 487 | 26.63 (0.21) | 379 (32.6%) | 108 (41.7%) | 1.00 | |
| MAF: 0.500 | CT-TT | 935 | 26.32 (0.13) | 784 (67.4%) | 151 (58.3%) | 0.66 (0.49–0.87) | |
|
| 0.14 |
| |||||
|
| |||||||
| rs5351 | |||||||
| HWE: 0.7881 | GG | 634 | 26.83 (0.18) | 477 (32.4%) | 157 (43.4%) | 1.00 | |
| MAF: 0.451 | AG-AA | 1199 | 26.52 (0.12) | 994 (67.6%) | 205 (56.6%) | 0.61 (0.48–0.78) | |
|
| 0.12 |
| |||||
| rs3759475 | |||||||
| HWE: 0.6045 | CC | 636 | 26.8 (0.18) | 482 (32.8%) | 154 (42.2%) | 1.00 | |
| MAF: 0.500 | CT-TT | 1197 | 26.57 (0.12) | 986 (67.2%) | 211 (57.8%) | 0.66 (0.52–0.84) | |
|
| 0.29 |
|
HWE, Hardy—Weinberg equilibrium; MAF, minor allele frequency; SNP, single-nucleotide polymorphism; OR, odds ratio. Values are mean ± standard error. Bold indicates significance.
*dbSNP 129.
Haplotype association analysis of rs5351 and rs3759475 of EDNRB gene with BMI and obesity risk adjusted by age and sex.
| Frequency | BMI | |||||||
|---|---|---|---|---|---|---|---|---|
| No. | Haplotype | Non-obese | Obese | Freq | OR (95% CI) | P-value | Difference (95% CI) | P-value |
| 1 | GC | 0.566 | 0.635 | 0.580 | 1.00 | --- | 0.00 | --- |
| 2 | AT | 0.418 | 0.347 | 0.403 | 0.73 (0.61–0.87) |
| -0.22 (-0.49–0.05) | 0.11 |
| 3 | GT + AC | 0.015 | 0.018 | 0.016 | 0.99 (0.52–1.88) | 0.97 | -0.32 (-1.39–0.74) | 0.55 |
Single nucleotide polymorphisms used in the haplotype construction: rs5351, rs3759475.
Fig 1Linkage Disequilibrium (LD) plot of studied EDNRB SNPs. a) D´ b) R2.
Relation with Arsenic serum levels.
| 1- Association with rs5351 (NM_001201397.1:c.1101A>G) of EDNRB gene. | |||||
|---|---|---|---|---|---|
| Genotype | N | BMI | % non obese | % obese | Obesity OR (95% CI) |
|
| |||||
| GG | 157 | 27.15 (0.36) | 115 (30.4%) | 42 (43.8%) | 1.00 |
| AG-AA | 319 | 26.59 (0.22) | 265 (69.6%) | 54 (56.2%) | 0.51 (0.32–0.82) |
| 0.08 |
| ||||
|
| |||||
| GG | 170 | 26.77 (0.35) | 133 (34.2%) | 37 (43.0%) | 1.00 |
| AG-AA | 305 | 26.32 (0.23) | 256 (65.8%) | 49 (57.0%) | 0.70 (0.43–1.13) |
| 0.29 | 0.15 | ||||
|
| |||||
| GG | 152 | 25.98 (0.37) | 123 (31.1%) | 29 (38.7%) | 1.00 |
| AG-AA | 318 | 25.92 (0.23) | 272 (68.9%) | 46 (61.3%) | 0.70 (0.41–1.20) |
| 0.71 | 0.20 | ||||
Association between obesity and BMI and SNPs of EDNRB genes adjusted by age and sex. OR, odds ratio. Values are mean ± standard error. Bold indicates significance.
Haplotype association analysis of rs5351 and rs3759475 of EDNRB gene with BMI and obesity risk adjusted by age and sex in relation with Arsenic serum levels.
| A) Individuals with higher Arsenic serum levels. | ||||||||
|---|---|---|---|---|---|---|---|---|
| Frequency | BMI | |||||||
| No. | Haplotype | Non-obese | Obese | Freq | OR (95% CI) | P-value | Difference (95% CI) | P-value |
| 1 | GC | 0.549 | 0.678 | 0.576 | 1.00 | --- | 0.00 | --- |
| 2 | AT | 0.430 | 0.306 | 0.405 | 0.53 (0.37–0.76) |
| -0.49 (-1.01–0.02) | 0.06 |
| 3 | AC | 0.012 | 0.010 | 0.012 | 0.66 (0.13–3.28) | 0.62 | 0.02 (-2.35–2.39) | 0.99 |
| 4 | GT | 0.008 | 0.005 | 0.007 | 0.78 (0.09–6.72) | 0.82 | -0.32 (-3.24–2.6) | 0.83 |
Single nucleotide polymorphisms used in the haplotype construction: rs5351, rs3759475.