Literature DB >> 25798936

MutMap accelerates breeding of a salt-tolerant rice cultivar.

Hiroki Takagi1, Muluneh Tamiru1, Akira Abe1, Kentaro Yoshida2, Aiko Uemura1, Hiroki Yaegashi1, Tsutomu Obara1, Kaori Oikawa1, Hiroe Utsushi1, Eiko Kanzaki1, Chikako Mitsuoka1, Satoshi Natsume1, Shunichi Kosugi3, Hiroyuki Kanzaki1, Hideo Matsumura4, Naoya Urasaki5, Sophien Kamoun2, Ryohei Terauchi1.   

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Year:  2015        PMID： 25798936     DOI： 10.1038/nbt.3188

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN： 1087-0156            Impact factor:   54.908


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  16 in total

1.  QTLs for Na+ and K+ uptake of the shoots and roots controlling rice salt tolerance.

Authors:  H X Lin; M Z Zhu; M Yano; J P Gao; Z W Liang; W A Su; X H Hu; Z H Ren; D Y Chao
Journal:  Theor Appl Genet       Date:  2003-09-26       Impact factor: 5.699

2.  Target site specificity of the Tos17 retrotransposon shows a preference for insertion within genes and against insertion in retrotransposon-rich regions of the genome.

Authors:  Akio Miyao; Katsuyuki Tanaka; Kazumasa Murata; Hiromichi Sawaki; Shin Takeda; Kiyomi Abe; Yoriko Shinozuka; Katsura Onosato; Hirohiko Hirochika
Journal:  Plant Cell       Date:  2003-08       Impact factor: 11.277

3.  Genome sequencing reveals agronomically important loci in rice using MutMap.

Authors:  Akira Abe; Shunichi Kosugi; Kentaro Yoshida; Satoshi Natsume; Hiroki Takagi; Hiroyuki Kanzaki; Hideo Matsumura; Kakoto Yoshida; Chikako Mitsuoka; Muluneh Tamiru; Hideki Innan; Liliana Cano; Sophien Kamoun; Ryohei Terauchi
Journal:  Nat Biotechnol       Date:  2012-01-22       Impact factor: 54.908

4.  A rice quantitative trait locus for salt tolerance encodes a sodium transporter.

Authors:  Zhong-Hai Ren; Ji-Ping Gao; Le-Gong Li; Xiu-Ling Cai; Wei Huang; Dai-Yin Chao; Mei-Zhen Zhu; Zong-Yang Wang; Sheng Luan; Hong-Xuan Lin
Journal:  Nat Genet       Date:  2005-09-11       Impact factor: 38.330

Review 5.  Mechanisms of salinity tolerance.

Authors:  Rana Munns; Mark Tester
Journal:  Annu Rev Plant Biol       Date:  2008       Impact factor: 26.379

6.  Retrotransposons of rice involved in mutations induced by tissue culture.

Authors:  H Hirochika; K Sugimoto; Y Otsuki; H Tsugawa; M Kanda
Journal:  Proc Natl Acad Sci U S A       Date:  1996-07-23       Impact factor: 11.205

7.  The Sequence Alignment/Map format and SAMtools.

Authors:  Heng Li; Bob Handsaker; Alec Wysoker; Tim Fennell; Jue Ruan; Nils Homer; Gabor Marth; Goncalo Abecasis; Richard Durbin
Journal:  Bioinformatics       Date:  2009-06-08       Impact factor: 6.937

8.  Fine definition of the pedigree haplotypes of closely related rice cultivars by means of genome-wide discovery of single-nucleotide polymorphisms.

Authors:  Toshio Yamamoto; Hideki Nagasaki; Jun-ichi Yonemaru; Kaworu Ebana; Maiko Nakajima; Taeko Shibaya; Masahiro Yano
Journal:  BMC Genomics       Date:  2010-04-27       Impact factor: 3.969

9.  Coval: improving alignment quality and variant calling accuracy for next-generation sequencing data.

Authors:  Shunichi Kosugi; Satoshi Natsume; Kentaro Yoshida; Daniel MacLean; Liliana Cano; Sophien Kamoun; Ryohei Terauchi
Journal:  PLoS One       Date:  2013-10-08       Impact factor: 3.240

10.  TopHat: discovering splice junctions with RNA-Seq.

Authors:  Cole Trapnell; Lior Pachter; Steven L Salzberg
Journal:  Bioinformatics       Date:  2009-03-16       Impact factor: 6.937
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  76 in total

1.  A Sorghum Mutant Resource as an Efficient Platform for Gene Discovery in Grasses.

Authors:  Yinping Jiao; John Burke; Ratan Chopra; Gloria Burow; Junping Chen; Bo Wang; Chad Hayes; Yves Emendack; Doreen Ware; Zhanguo Xin
Journal:  Plant Cell       Date:  2016-06-27       Impact factor: 11.277

2.  Rapid identification of causal mutations in tomato EMS populations via mapping-by-sequencing.

Authors:  Virginie Garcia; Cécile Bres; Daniel Just; Lucie Fernandez; Fabienne Wong Jun Tai; Jean-Philippe Mauxion; Marie-Christine Le Paslier; Aurélie Bérard; Dominique Brunel; Koh Aoki; Saleh Alseekh; Alisdair R Fernie; Paul D Fraser; Christophe Rothan
Journal:  Nat Protoc       Date:  2016-11-03       Impact factor: 13.491

3.  INDETERMINATE SPIKELET1 Recruits Histone Deacetylase and a Transcriptional Repression Complex to Regulate Rice Salt Tolerance.

Authors:  Xiliu Cheng; Shaoxuan Zhang; Weichun Tao; Xiangxiang Zhang; Jie Liu; Jiaqiang Sun; Haiwen Zhang; Li Pu; Rongfeng Huang; Tao Chen
Journal:  Plant Physiol       Date:  2018-07-30       Impact factor: 8.340

4.  Gene identification and transcriptome analysis of low cadmium accumulation rice mutant (lcd1) in response to cadmium stress using MutMap and RNA-seq.

Authors:  Zhen Zhen Cao; Xiao Yan Lin; Yong Jie Yang; Mei Yan Guan; Ping Xu; Ming Xue Chen
Journal:  BMC Plant Biol       Date:  2019-06-11       Impact factor: 4.215

5.  A novel single-base mutation in CaBRI1 confers dwarf phenotype and brassinosteroid accumulation in pepper.

Authors:  Bozhi Yang; Shudong Zhou; Lijun Ou; Feng Liu; Liying Yang; Jingyuan Zheng; Wenchao Chen; Zhuqing Zhang; Sha Yang; Yanqing Ma; Xuexiao Zou
Journal:  Mol Genet Genomics       Date:  2019-11-19       Impact factor: 3.291

6.  Cscs encoding chorismate synthase is a candidate gene for leaf variegation mutation in cucumber.

Authors:  Wen Cao; Yalin Du; Chao Wang; Lilin Xu; Tao Wu
Journal:  Breed Sci       Date:  2018-11-17       Impact factor: 2.086

7.  A cytochrome P450, OsDSS1, is involved in growth and drought stress responses in rice (Oryza sativa L.).

Authors:  Muluneh Tamiru; Jerwin R Undan; Hiroki Takagi; Akira Abe; Kakoto Yoshida; Jesusa Q Undan; Satoshi Natsume; Aiko Uemura; Hiromasa Saitoh; Hideo Matsumura; Naoya Urasaki; Takao Yokota; Ryohei Terauchi
Journal:  Plant Mol Biol       Date:  2015-03-24       Impact factor: 4.076

8.  Genetic mapping and molecular marker development for Pi65(t), a novel broad-spectrum resistance gene to rice blast using next-generation sequencing.

Authors:  Wenjing Zheng; Yan Wang; Lili Wang; Zuobin Ma; Jiaming Zhao; Ping Wang; Lixia Zhang; Zhiheng Liu; Xiaochun Lu
Journal:  Theor Appl Genet       Date:  2016-02-16       Impact factor: 5.699

9.  Effective identification of soybean candidate genes involved in resistance to soybean cyst nematode via direct whole genome re-sequencing of two segregating mutants.

Authors:  Shiming Liu; Fengyong Ge; Wenkun Huang; David A Lightfoot; Deliang Peng
Journal:  Theor Appl Genet       Date:  2019-06-27       Impact factor: 5.699

10.  Comparative genomic analyses of two segregating mutants reveal seven genes likely involved in resistance to Fusarium equiseti in soybean via whole genome re-sequencing.

Authors:  Liuping Zhang; Wenkun Huang; Deliang Peng; Shiming Liu
Journal:  Theor Appl Genet       Date:  2019-07-23       Impact factor: 5.699
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