Literature DB >> 25796391

Symmetrical and Thermodynamic Properties of Phenotypic Graphs of Amino Acids Encoded by the Primeval RNY Code.

Marco V José1, Gabriel S Zamudio, Miryam Palacios-Pérez, Juan R Bobadilla, Sávio Torres de Farías.   

Abstract

The 12 different types of graphs of the 8 amino acids encoded by the presumably primeval RNY code are derived. The symmetry groups of these graphs are analyzed and coincide with the corresponding values of polar requirement for each amino acid. The symmetry groups at the codon level are partially carried over as a group or subgroup at the amino acid level. Measures of centrality of the 12 graphs indicate that all amino acids were equally relevant irrespective of its chronological order of its appearance. The elimination of any amino acid would be strongly selected against and therefore the genetic code at this stage was already frozen.

Mesh:

Substances:

Year:  2015        PMID: 25796391     DOI: 10.1007/s11084-015-9427-4

Source DB:  PubMed          Journal:  Orig Life Evol Biosph        ISSN: 0169-6149            Impact factor:   1.950


  11 in total

1.  The mechanism of synthesis of amino acids by electric discharges.

Authors:  S L MILLER
Journal:  Biochim Biophys Acta       Date:  1957-03

2.  A production of amino acids under possible primitive earth conditions.

Authors:  S L MILLER
Journal:  Science       Date:  1953-05-15       Impact factor: 47.728

3.  Genetic hotels for the standard genetic code: evolutionary analysis based upon novel three-dimensional algebraic models.

Authors:  Marco V José; Eberto R Morgado; Tzipe Govezensky
Journal:  Bull Math Biol       Date:  2010-08-20       Impact factor: 1.758

4.  Primordial synthesis of amines and amino acids in a 1958 Miller H2S-rich spark discharge experiment.

Authors:  Eric T Parker; Henderson J Cleaves; Jason P Dworkin; Daniel P Glavin; Michael Callahan; Andrew Aubrey; Antonio Lazcano; Jeffrey L Bada
Journal:  Proc Natl Acad Sci U S A       Date:  2011-03-21       Impact factor: 11.205

5.  An extended RNA code and its relationship to the standard genetic code: an algebraic and geometrical approach.

Authors:  Marco V José; Eberto R Morgado; Tzipe Govezensky
Journal:  Bull Math Biol       Date:  2006-11-02       Impact factor: 1.758

6.  The genetic code is one in a million.

Authors:  S J Freeland; L D Hurst
Journal:  J Mol Evol       Date:  1998-09       Impact factor: 2.395

Review 7.  New insights into prebiotic chemistry from Stanley Miller's spark discharge experiments.

Authors:  Jeffrey L Bada
Journal:  Chem Soc Rev       Date:  2013-01-22       Impact factor: 54.564

8.  The molecular basis for the genetic code.

Authors:  C R Woese; D H Dugre; W C Saxinger; S A Dugre
Journal:  Proc Natl Acad Sci U S A       Date:  1966-04       Impact factor: 11.205

9.  The hypercycle. A principle of natural self-organization. Part A: Emergence of the hypercycle.

Authors:  M Eigen; P Schuster
Journal:  Naturwissenschaften       Date:  1977-11

10.  Three-Dimensional Algebraic Models of the tRNA Code and 12 Graphs for Representing the Amino Acids.

Authors:  Marco V José; Eberto R Morgado; Romeu Cardoso Guimarães; Gabriel S Zamudio; Sávio Torres de Farías; Juan R Bobadilla; Daniela Sosa
Journal:  Life (Basel)       Date:  2014-08-11
View more
  3 in total

1.  A Proposal of the Ur-proteome.

Authors:  Miryam Palacios-Pérez; Fernando Andrade-Díaz; Marco V José
Journal:  Orig Life Evol Biosph       Date:  2017-11-10       Impact factor: 1.950

2.  On the Uniqueness of the Standard Genetic Code.

Authors:  Gabriel S Zamudio; Marco V José
Journal:  Life (Basel)       Date:  2017-02-13

3.  A unified model of the standard genetic code.

Authors:  Marco V José; Gabriel S Zamudio; Eberto R Morgado
Journal:  R Soc Open Sci       Date:  2017-03-01       Impact factor: 2.963

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.