| Literature DB >> 25793574 |
Francesca Chiovaro1, Ruth Chiquet-Ehrismann, Matthias Chiquet.
Abstract
Extracellular matrix proteins of the tenascin family resemble each other in their domain structure, and also share functions in modulating cell adhesion and cellular responses to growth factors. Despite these common features, the 4 vertebrate tenascins exhibit vastly different expression patterns. Tenascin-R is specific to the central nervous system. Tenascin-C is an "oncofetal" protein controlled by many stimuli (growth factors, cytokines, mechanical stress), but with restricted occurrence in space and time. In contrast, tenascin-X is a constituitive component of connective tissues, and its level is barely affected by external factors. Finally, the expression of tenascin-W is similar to that of tenascin-C but even more limited. In accordance with their highly regulated expression, the promoters of the tenascin-C and -W genes contain TATA boxes, whereas those of the other 2 tenascins do not. This article summarizes what is currently known about the complex transcriptional regulation of the 4 tenascin genes in development and disease.Entities:
Keywords: AKT, v-akt murine thymoma viral oncogene homolog; ALK, anaplastic lymphoma kinase; AP-1, activator protein-1; ATF, activating transcription factor; BMP, bone morphogenetic protein; CBP, CREB binding protein; CREB, cAMP response element-binding protein; CREB-RP, CREB-related protein; CYP21A2, cytochrome P450 family 21 subfamily A polypeptide 2; ChIP, chromatin immunoprecipitation; EBS, Ets binding site; ECM, extracellular matrix; EGF, epidermal growth factor; ERK1/2, extracellular signal-regulated kinase 1/2; ETS, E26 transformation-specific; EWS-ETS, Ewing sarcoma-Ets fusion protein; Evx1, even skipped homeobox 1; FGF, fibroblast growth factor; HBS, homeodomain binding sequence; IL, interleukin; ILK, integrin-linked kinase; JAK, Janus kinase; JNK, c-Jun N-terminal kinase; MHCIII, major histocompatibility complex class III; MKL1, megakaryoblastic leukemia-1; NFκB, nuclear factor kappa B; NGF, nerve growth factor; NFAT, nuclear factor of activated T-cells; OTX2, orthodenticle homolog 2; PDGF, platelet-derived growth factor; PI3K, phosphatidylinositol 3-kinase; POU3F2, POU domain class 3 transcription factor 2; PRRX1, paired-related homeobox 1; RBPJk, recombining binding protein suppressor of hairless; ROCK, Rho-associated, coiled-coil-containing protein kinase; RhoA, ras homolog gene family member A; SAP, SAF-A/B, Acinus, and PIAS; SCX, scleraxix; SEAP, secreted alkaline phosphatase; SMAD, small body size - mothers against decapentaplegic; SOX4, sex determining region Y-box 4; SRE, serum response element; SRF, serum response factor; STAT, signal transducer and activator of transcription; TGF-β, transforming growth factor-β; TNC, tenascin-C; TNF-α, tumor necrosis factor-α; TNR, tenascin-R; TNW, tenascin-W; TNX, tenascin-X; TSS, transcription start site; UTR, untranslated region; WNT, wingless-related integration site; cancer; cytokine; development; extracellular matrix; gene promoter; gene regulation; glucocorticoid; growth factor; homeobox gene; matricellular; mechanical stress; miR, micro RNA; p38 MAPK, p38 mitogen activated protein kinase; tenascin; transcription factor
Mesh:
Substances:
Year: 2015 PMID: 25793574 PMCID: PMC4422812 DOI: 10.1080/19336918.2015.1008333
Source DB: PubMed Journal: Cell Adh Migr ISSN: 1933-6918 Impact factor: 3.405
Figure 1.Schematic representation of all tenascin genes. Gene models of TNC, tenascin-C; TNN, tenascin-W; TNR, tenascin-R; TNXB, tenascin-X were captured from the NCBI database (http://www.ncbi.nlm.nih.gov/gene/). TNC, TNN and TNR have a single transcription start site (TSS1) whereas the TNXB gene has 4 closely clustered TSSs(TSS1–4) in its principle promoter shown here. Non-coding exons up to the first coding exons (indicated by the translation start codon ATG) as well as the last exons are numbered with e1, 2, … below the models. Note that the TNC and TNN genes possess TATA boxes (red triangles) whereas the TNR and the TNXB genes do not.
Summary of transcriptional regulation of the tenascin gene promoters. For each publication cited, the species of the promoter analyzed, the transcription factor(s) over-expressed or growth factors added, the response elements and their sequences and relative position to the TSS are listed together with a short description of the main experimental evidence provided
| Gene | Promoter species | Transcription factor overexpressed or factors added | Response element | Sequence | Position | Functional assays |
|---|---|---|---|---|---|---|
| Chicken | −3986 to + 121 | 3986bp more active than 721bp promoter in chicken embryo fibroblasts. 3986bp promoter active in human U251MG cells, but not in HT1080 cells. | ||||
| Chicken | EVX1 (mouse) | TRE/AP1 | CTGAGTCAT | −281 to −273 | Reporter activation in NIH3T3 cells and inactivation by mutation of response elements. | |
| Chicken | HBS 1 | TAATGATGAT | −1354 to −1345 | In vitro binding assay with | ||
| HBS 2 | TAATGATTCT | −1369 to −1360 | ||||
| Chicken | AP1 | CTGAGTCAT | −281 to −273 | Reporter activation in chicken embryo fibroblasts; deletion of response element. | ||
| ECM | −570 to −469 | Reporter activation on attached but not floating collagen gels; transfer of response to SV40 promoter | ||||
| Mouse | −247 to + 147 | 247bp promoter construct was more active than longer constructs in NIH3T3 and chicken fibroblasts | ||||
| Mouse | POU3F2 (BRN2) | octamer | ATGCAATG | −201 to −193 | Reporter activation in mouse mouse N2A cells, but not in rat C6 cells. Binding assays (EMSA, footprint). | |
| NF1 | TGGCGGCGCGCCT | −187 to −165 | Inactivation of reporter activity by mutation of response element in N2A, C6 and NIH3T3 cells. | |||
| EGR1 (KROX-24) | KROX20/24 | GCGGGGGCG | −256 to −248 | In vitro binding assays. Presence of element represses reporter in N2A cells, but not in NIH3T3 or C6 cells. | ||
| Mouse 42,43 | PRRX1 (PRX1) | HBS | CATTAC | −57 to −52 | Reporter activation in rat A10 vascular SMCs and RFL-6 lung fibroblasts, EMSA and supershift. | |
| Mouse | MKL1 | SRE (CArG) | CTATTTATGG | −1414 to −1423 | SRF-dependent reporter activation in NIH3T3 cells and inactivation by mutation of response elements. | |
| MKL1mutB1 | −247 to + 147 | SRF-independent SAP domain dependent promoter activation by cyclic strain; ChIP | ||||
| Mouse | MKL1 | −247 to + 147 | SRF-independent SAP domain dependent promoter activation in HC11 mammary epithelial cells | |||
| Human | SOX4 | |||||
| Human | −220 to +79 | 220bp promoter more active than longer constructs in SK-Mel-28 and InR1-G9 cells. Positive effect of first 20bp of first exon; inclusion of 1338bp of the first intron in the long promoter construct activates the reporter in SK-Mel-28, but not InR1-G9 cells. | ||||
| Human | OTX2 | OTS | TAATCC | −530 to −525 | In vitro binding assays. | |
| Human | OTX2 | OTS | TCTAATCCC | −531 to −523 | Reporter repression in U87-MG human glioblastoma cells; EMSA and binding studies. | |
| Human | TGF-β and SMAD3 and 4ETS1 | CAGA1CAGA2EBS1 | TCTGGCAGAGTTCC | −66 to −62−43 to −39−121 to −118 | Reporter activation in human dermal fibroblasts in a complex with CBP-300; mutation of response elements; DNA affinity precipitation; Co-IP`s of complexes. | |
| EBS4 | GGAA | −39 to −36 | ||||
| SP1 | SBS2 | GGC | −60 to −58 | |||
| SBS3 | GGA | −39 to −37 | ||||
| Human | PDGF and ETS1,2 and SP1 | EBS1EBS3EBS4SBS2 | TTCCGGAAAGGATGGAAGGC | −121 to −118−76 to −68−39 to −36−60 to −58 | Reporter activation in human dermal fibroblasts after PDGF stimulation; mutation of response elements; overexpression of dominant negative TFs; Co-IP`s of complexes | |
| SBS3 | GGA | −39 to −37 | ||||
| PDGF and FLI1 | SBS2SBS3 | GGCGGA | −60 to −58−39 to −37 | Abrogation of PDGF-induced reporter expression in human dermal fibroblasts | ||
| Human | EWS-FLI; EWS-ERG (EWS-ETS) | EBS1–4 | GGAA | −130 to −30 | Reporter activation in H1299 cells. Endogenous transcripts induced by EWS-ETS, but not FLI or ERG | |
| Human | JUNRELA (p65) | GCN4NFkB | TGAGTGGGGAATTCCT | −149 to −144−214 to −207 | Synergistic reporter activation; mutation of response elements EMSA; transcripts induced by Jun overexpression in rat embryo fibroblasts. | |
| Human | NOTCH2 | RBPJk | GTGGGAA | −79 to −73 | Reporter activation in Hs683 cells and inactivation by mutation of response element, or mutation of NOTCH2. | |
| Human | GATA6 | TTATCC | −467 to −462 | Reporter repression in human dermal fibroblasts (both basal and IL-4 or TGF-β induced); mutation of binding element; ChIP | ||
| Human | NFKBIA (IkBα); IKBKB (IKK-β) | NFkB | GGGAATTCCT | −214 to −207 | Deletion of binding element inhibits promoter activation; EMSA; Overexpression of dominant negative regulators of NFkB inhibit strain-induced promoter activation in neonatal rat cardiac myocytes. | |
| Mouse | −167 to +435 | 167bp promoter was sufficient for full activity of reporter expression in cell lines of neural or glial origin but not in NIH3T3 and P19 teratocarcinoma cells. | ||||
| Human | −57 to +40 | 57bp promoter was sufficient for full activity of reporter expression in cell lines of neural or glial origin but not in SK-MEL28 and HeLa cells. | ||||
| Mouse | −150 to +333 | More active than longer or shorter constructs in mouse L and human 293Tcells | ||||
| SP1 | GGGAGG | −145 to −150 | Mutation of binding element reduces reporter activity; EMSA and supershifts. | |||
| Human | −181 to +88 | Higher activity in HT1080 cells than longer or shorter constructs; TSS in HT1080 cells and fibroblasts at +46bp. | ||||
| SP1, SP3 | SP1/3 | GGG…GGG…GGG…GGG…CCC | −33 to −76 | Activation of 311bp and 181bp reporter constructs in Drosophila S9 cells. Mutation of binding sites inhibits promoter activity; EMSA and supershifts. |
Figure 2.Scheme of the gene promoters of the 4 tenascins. The transcription start sites (TSS) are indicated with blue arrows in front of the first exons (e1; blue boxes). The start codons (ATG) of the translation start sites are marked with red arrows in the second (e2) or third exon (e3; for TNR), respectively. The upstream promoter sequences are represented by horizontal light blue lines, on which the experimentally confirmed transcription factor binding sites are marked by vertical bars. Dark blue color refers to those sites reported for the human promoters; sites described so far in the mouse promoters only are labeled in green. For nomenclature of binding sites and transcription factors, see the list of abbreviations. For additional information and publications on individual binding sites, refer to . Note that the promoter sequences are not drawn to scale. However, the exact location of each binding site is indicated below the bars; numbers refer to the distance in base pairs from the transcription start site.