| Literature DB >> 25792464 |
Cha Soon Kim1, Ki Moon Seong2, Byung Sub Lee1, In Kyung Lee1, Kwang Hee Yang1, Ji-Young Kim1, Seon Young Nam3.
Abstract
Although radiation effects have been extensively studied, the biological effects of low-dose radiation (LDR) are controversial. This study investigates LDR-induced alterations in locomotive behavior and gene expression profiles of Drosophila melanogaster. We measured locomotive behavior using larval pupation height and the rapid iterative negative geotaxis (RING) assay after exposure to 0.1 Gy γ-radiation (dose rate of 16.7 mGy/h). We also observed chronic LDR effects on development (pupation and eclosion rates) and longevity (life span). To identify chronic LDR effects on gene expression, we performed whole-genome expression analysis using gene-expression microarrays, and confirmed the results using quantitative real-time PCR. The pupation height of the LDR-treated group at the first larval instar was significantly higher (∼2-fold increase in PHI value, P < 0.05). The locomotive behavior of LDR-treated male flies (∼3 - 5 weeks of age) was significantly increased by 7.7%, 29% and 138%, respectively (P < 0.01), but pupation and eclosion rates and life spans were not significantly altered. Genome-wide expression analysis identified 344 genes that were differentially expressed in irradiated larvae compared with in control larvae. We identified several genes belonging to larval behavior functional groups such as locomotion (1.1%), oxidation reduction (8.0%), and genes involved in conventional functional groups modulated by irradiation such as defense response (4.9%), and sensory and perception (2.5%). Four candidate genes were confirmed as differentially expressed genes in irradiated larvae using qRT-PCR (>2-fold change). These data suggest that LDR stimulates locomotion-related genes, and these genes can be used as potential markers for LDR.Entities:
Keywords: Drosophila behavior; gene expression microarray; locomotion; low-dose radiation
Mesh:
Substances:
Year: 2015 PMID: 25792464 PMCID: PMC4426922 DOI: 10.1093/jrr/rru128
Source DB: PubMed Journal: J Radiat Res ISSN: 0449-3060 Impact factor: 2.724
Oligonucleotide primer sequences for quantitative real-time PCR
| Primer name | Sequence (5′ → 3′) | Gene | GenBank acc. no. |
|---|---|---|---|
| gapdh1 forward | GAAGGGAATCCTGGGCTACA | NM_080369 | |
| gapdh1 reverse | CGTCGAACACAGACGAATGG | ||
| norpA forward | CGAAAACGCACCTGTATTCC | NM_001169190 | |
| norpA reverse | GTAATGGGCCAGTGGCTGAT | ||
| Lsp2 forward | CTTTGTCTGCATCCACTTACC | NM_080077 | |
| Lsp2 reverse | ACAAGGTGGACTGACAAGCT | ||
| Est98B forward | ACCGGCGATGAACTATGATA | NM_079811 | |
| Est98B reverse | TCCGTCTTCTTCATGATTCC | ||
| Fbp2 forward | CGCGATGGAGATGATGAAGA | NM_078798 | |
| Fbp2 reverse | ATCGTGGGCGTAACCTCCTT |
Fig. 1.Low-dose γ-radiation effects on pupation-height behavior and larval developmental processes in Drosophila. (A) Pupation sites of all tested larvae were recorded and the average population value was determined. Pupation height was higher in larvae exposed to 0.1 Gy of γ-radiation compared with that of control larvae. (B) The pupation-height index was greater in larvae exposed to 0.1 Gy of γ-radiation compared with that of control larvae. (C, D) To determine whether chronic LDR influenced fly development, we evaluated the pupation rate (C) and the eclosion rate (D) in irradiated and control larvae. Error bars represent SEM. Statistical significance was calculated using Student's t-test (*P < 0.05).
Fig. 2.Low-dose γ-radiation effects on adult climbing activity and longevity after irradiating Drosophila larvae. The rapid iterative negative geotaxis (RING) assay was used to measure fly locomotor activity. Climbing activity of (A) male and (B) female flies irradiated with 0.1 Gy γ-radiation was examined for flies aged 1 − 6 weeks and compared with that of control flies. Error bars represent SEM. Statistical significance was calculated using Student's t-test (*P < 0.05, **P < 0.01). Survival rates of control and irradiated (exposed to 0.1 Gy at the larval stage) flies were recorded. Age was measured in days after emergence. LDR had no effect on (C) male life span (P = 0.1592 with log rank test) or (D) female life span (P = 0.5750 with log rank test). Longevity analysis was performed three times, and data were analyzed with the Wilcoxon test.
Functional classification (biological process, molecular function) of 344 differentially expressed genes respond to LDR in Drosophila larvae (P < 0.05)
| Category | Term | Count | Genes | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Gene name | Fold ratio | GenBank Acc. No | Description | Genomic Coordinates | Cytoband | ||||
| Biological process | GO:0006952 defense response | 8 | 0.00199 | 0.45335618 | NM_142306 | – | chr3R:12422851-12422795 | dm|3R89D5 | |
| 1.8602393 | NM_134945 | Scavenger receptor class C, type IV | chr2L:3522653-3522594 | dm|2L23F6 | |||||
| 1.5728586 | NM_078948 | Defensin | chr2R:5941989-5941930 | dm|2R46D9 | |||||
| 1.5037334 | NM_057464 | prophenol oxidase A1 | chr2R:13774816-13774757 | dm|2R54F6 | |||||
| 1.7244722 | NM_001104007 | chr3L:1893545-1893486 | dm|3L62B9 | ||||||
| 1.7282056 | NM_165238 | chr2L:18086097-18086156 | dm|2L36E3 | ||||||
| 1.6542897 | NM_001169542 | fondue | chr2L:19385792-19385353 | dm|2L37D3 | |||||
| 1.6513002 | 0 | Immune induced molecule 14 | chr2R:16758079-16758138 | dm|2R57B3 | |||||
| GO:0055114 oxidation reduction | 13 | 0.02467 | 1.5207597 | NM_001103698 | chr2L:16853737-16853678 | dm|2L36B2 | |||
| 1.500386 | NM_132722 | chrX:14134103-14134162 | dm|X12E5 | ||||||
| 1.5812901 | NM_001015405 | chr3LHet:1140421-1140362 | |||||||
| 1.5520066 | NM_134830 | chr2L:2370297-2370238 | dm|2L22E1 | ||||||
| 2.14801 | NM_078803 | Cytochrome P450-4e3 | chr2L:9747958-9747899 | dm|2L30C7 | |||||
| 1.540999 | NM_130519 | chrX:840783-840724 | dm|X1D2 | ||||||
| 18.835476 | NM_078798 | Fat body protein 2 | chr2L:9427743-9427802 | dm|2L30B3 | |||||
| 1.987148 | NM_165198 | chr2L:16849144-16849085 | dm|2L36B2 | ||||||
| 1.5894746 | NM_132758 | Ecdysone oxidase | chrX:14810875-14810816 | dm|X13A1 | |||||
| 1.5037334 | NM_057464 | prophenol oxidase A1 | chr2R:13774816-13774757 | dm|2R54F6 | |||||
| 1.957855 | NM_001014580 | Dihydropteridine reductase | chr3L:9128701-9128760 | dm|3L67A1 | |||||
| 0.58311474 | NM_001260339 | chr3R:19646548-19646607 | dm|3R95C1 | ||||||
| 1.9879138 | NM_140299 | chr3L:12180735-12180794 | dm|3L69A1 | ||||||
| Molecular function | GO:0005344 oxygen transporter activity | 5 | 0.00002 | 4.932235 | NM_080077 | Larval serum protein 2 | chr3L:12124737-12124796 | dm|3L68F5 | |
| 1.5037334 | NM_057464 | prophenol oxidase A1 | chr2R:13774816-13774757 | dm|2R54F6 | |||||
| 1.9465075 | NM_078583 | Larval serum protein 1 alpha | chrX:12386831-12386890 | dm|X11A12 | |||||
| CG8100 | 1.8050036 | NM_140436 | chr3L:14078775-14078834 | dm|3L70D2 | |||||
| 2.3051763 | NM_141340 | globin 3 | chr3R:1657155-1657214 | dm|3R83C4 | |||||
| GO:0005044 scavenger receptor activity | 4 | 0.00280 | 0.45335618 | NM_142306 | chr3R:12422851-12422795 | dm|3R89D5 | |||
| 1.8602393 | NM_134945 | Scavenger receptor class C, type IV | chr2L:3522653-3522594 | dm|2L23F6 | |||||
| 1.7244722 | NM_001104007 | – | chr3L:1893545-1893486 | dm|3L62B9 | |||||
| 1.7282056 | NM_165238 | – | chr2L:18086097-18086156 | dm|2L36E3 | |||||
| GO:0005096 GTPase activator activity | 5 | 0.01296 | 1.5596985 | NM_164392 | drongo | chr2L:833791-833732 | dm|2L21E2 | ||
| 2.21713 | NM_144124 | tre oncogene-related protein | chr2R:9874914-9874855 | dm|2R50C23 | |||||
| 1.5090106 | NM_001260313 | locomotion defects | chr3R:18452089-18448623 | dm|3R94B7 | |||||
| 1.636429 | NM_001169190 | no receptor potential A | chrX:4251717-4251776 | dm|X4C1 | |||||
| 1.7273139 | NM_001103471 | Drosophila melanogaster sprint (spri), transcript variant H, mRNA | chrX:10390835-10390776 | dm|X9D2 | |||||
| Molecular Function | GO:0008047 enzyme activator activity | 5 | 0.02687 | 1.5596985 | NM_164392 | drongo | chr2L:833791-833732 | dm|2L21E2 | |
| 2.21713 | NM_144124 | tre oncogene-related protein | chr2R:9874914-9874855 | dm|2R50C23 | |||||
| 1.5090106 | NM_001260313 | locomotion defects | chr3R:18452089-18448623 | dm|3R94B7 | |||||
| 1.636429 | NM_001169190 | no receptor potential A | chrX:4251717-4251776 | dm|X4C1 | |||||
| 1.7273139 | NM_001103471 | chrX:10390835-10390776 | dm|X9D2 | ||||||
| GO:0016298 lipase activity | 5 | 0.02687 | 1.5556251 | NM_132058 | – | chrX:5886453-5886512 | dm|X5D1 | ||
| 1.5764413 | NM_143534 | chr3R:26257032-26257091 | dm|3R99F4 | ||||||
| 1.597753 | NM_001169974 | brummer | chr3L:14770600-14770541 | dm|3L70F5 | |||||
| 1.7423133 | NM_143267 | – | chr3R:22846017-22845960 | dm|3R97D14 | |||||
| 1.636429 | NM_001169190 | no receptor potential A | chrX:4251717-4251776 | dm|X4C1 | |||||
| GO:0015370 solute:sodium symporter activity | 4 | 0.04219 | 1.6694626 | NM_135293 | – | chr2L:7719922-7719863 | dm|2L28C2 | ||
| 1.8739051 | NM_135292 | – | chr2L:7717111-7717052 | dm|2L28C1 | |||||
| 2.0286412 | NM_132904 | – | chrX:16434630-16434571 | dm|X14E1 | |||||
| 1.5052466 | NM_001170179 | – | chr3R:14585019-14584960 | dm|3R91C6 | |||||
Seven differentially expressed genes involved in locomotion that are modulated by LDR
| Agilent probe ID | Normalized | Common | GenBank acc. no. | Description |
|---|---|---|---|---|
| A_09_P199635 | 1.57 | NM_079259 | Division abnormally delayed (source, FlyBase; gene name, Acc:FBgn0011577) (FBtr0076583) | |
| A_09_P145565 | 1.64 | NM_001169190 | No receptor potential A (source, FlyBase; gene name, Acc:FBgn0262738) (FBtr0301475) | |
| A_09_P048936 | 1.73 | NM_001103471 | ||
| A_09_P044761 | 1.70 | NM 057379 | Slit (CG43758; FBgn0264089) | |
| A_09_P043376 | 4.93 | NM_080077 | Larval serum protein 2 (source, FlyBase; gene name, Acc:FBgn0002565) (FBtr0089324) | |
| A_09_P032511 | 2.22 | NM_144124 | Tre oncogene-related protein (source, FlyBase; gene name, Acc:FBgn0020620) (FBtr0087605) | |
| A_09_P011736 | 1.78 | NM_079811 | Ets at 98B (source, FlyBase; gene name, Acc:FBgn0005659)(FBtr0085224) |
Fig. 3.Comparison of transcript levels in microarray and qRT-PCR analyses. Relative changes in transcript levels in microarray analysis (black bars) were compared with those of qRT-PCR analysis (white bars) (mean ± SD). Data from three individual experiments are presented.