Literature DB >> 25791607

From local to global changes in proteins: a network view.

Laurent Vuillon1, Claire Lesieur2.   

Abstract

To fulfill the biological activities in living organisms, proteins are endowed with dynamics, robustness and adaptability. The three properties co-exist because they allow global changes in structure to arise from local perturbations (dynamics). Robustness refers to the ability of the protein to incur such changes without suffering loss of function; adaptability is the emergence of a new biological activity. Since loss of function may jeopardize the survival of the organism and lead to disease, adaptability may occur through the combination of two local perturbations that together rescue the initial function. The review highlights the relevancy of computational network analysis to understand how a local change produces global changes.
Copyright © 2015 Elsevier Ltd. All rights reserved.

Mesh:

Substances:

Year:  2015        PMID: 25791607     DOI: 10.1016/j.sbi.2015.02.015

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  10 in total

Review 1.  Locating and Navigating Energy Transport Networks in Proteins.

Authors:  Korey M Reid; David M Leitner
Journal:  Methods Mol Biol       Date:  2021

2.  Exploring Allosteric Pathways of a V-Type Enzyme with Dynamical Perturbation Networks.

Authors:  Aria Gheeraert; Lorenza Pacini; Victor S Batista; Laurent Vuillon; Claire Lesieur; Ivan Rivalta
Journal:  J Phys Chem B       Date:  2019-04-15       Impact factor: 2.991

3.  Small Conformational Changes Underlie Evolution of Resistance to NNRTI in HIV Reverse Transcriptase.

Authors:  Ashutosh Srivastava; Varun Birari; Somdatta Sinha
Journal:  Biophys J       Date:  2020-04-16       Impact factor: 4.033

4.  Singular Interface Dynamics of the SARS-CoV-2 Delta Variant Explained with Contact Perturbation Analysis.

Authors:  Aria Gheeraert; Laurent Vuillon; Laurent Chaloin; Olivier Moncorgé; Thibaut Very; Serge Perez; Vincent Leroux; Isaure Chauvot de Beauchêne; Dominique Mias-Lucquin; Marie-Dominique Devignes; Ivan Rivalta; Bernard Maigret
Journal:  J Chem Inf Model       Date:  2022-06-06       Impact factor: 6.162

5.  Deciphering collaborative sidechain motions in proteins during molecular dynamics simulations.

Authors:  Bruck Taddese; Antoine Garnier; Hervé Abdi; Daniel Henrion; Marie Chabbert
Journal:  Sci Rep       Date:  2020-09-28       Impact factor: 4.379

6.  An optimal distance cutoff for contact-based Protein Structure Networks using side-chain centers of mass.

Authors:  Juan Salamanca Viloria; Maria Francesca Allega; Matteo Lambrughi; Elena Papaleo
Journal:  Sci Rep       Date:  2017-06-06       Impact factor: 4.379

7.  Comparative Study of Elastic Network Model and Protein Contact Network for Protein Complexes: The Hemoglobin Case.

Authors:  Guang Hu; Luisa Di Paola; Zhongjie Liang; Alessandro Giuliani
Journal:  Biomed Res Int       Date:  2017-01-22       Impact factor: 3.411

Review 8.  Protein Folding and Mechanisms of Proteostasis.

Authors:  José Fernando Díaz-Villanueva; Raúl Díaz-Molina; Victor García-González
Journal:  Int J Mol Sci       Date:  2015-07-28       Impact factor: 5.923

9.  Bioregulatory systems medicine: an innovative approach to integrating the science of molecular networks, inflammation, and systems biology with the patient's autoregulatory capacity?

Authors:  Alyssa W Goldman; Yvonne Burmeister; Konstantin Cesnulevicius; Martha Herbert; Mary Kane; David Lescheid; Timothy McCaffrey; Myron Schultz; Bernd Seilheimer; Alta Smit; Georges St Laurent; Brian Berman
Journal:  Front Physiol       Date:  2015-08-19       Impact factor: 4.566

10.  Effects of Distal Mutations on the Structure, Dynamics and Catalysis of Human Monoacylglycerol Lipase.

Authors:  Sergiy Tyukhtenko; Girija Rajarshi; Ioannis Karageorgos; Nikolai Zvonok; Elyssia S Gallagher; Hongwei Huang; Kiran Vemuri; Jeffrey W Hudgens; Xiaoyu Ma; Mahmoud L Nasr; Spiro Pavlopoulos; Alexandros Makriyannis
Journal:  Sci Rep       Date:  2018-01-29       Impact factor: 4.379

  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.